mRNA_P-wetherbeei_contig7869.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7869.1.1
Unique NamemRNA_P-wetherbeei_contig7869.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7869.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7869contigP-wetherbeei_contig7869:2..1216 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1216
Hectar predicted targeting categoryother localisation
Exons1
Cds size1215
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187005.697456-CDS-P-wetherbeei_contig7869:1..12161683187005.697456-CDS-P-wetherbeei_contig7869:1..1216Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7869 2..1216 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7869.1.1prot_P-wetherbeei_contig7869.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7869 2..1216 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7869.1.1

>prot_P-wetherbeei_contig7869.1.1 ID=prot_P-wetherbeei_contig7869.1.1|Name=mRNA_P-wetherbeei_contig7869.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=405bp
AAEKVWESEEIEAAERRAAVAAARPFFWAWQRVAAAALRKTERRRWLDAG
HLFSMRRHGLRRWRGRVELAARESQSLALAACHDGSRLRVSGVSRWRAHA
KAVQLAASANAVEERCRRTSLRTALAAFHAALAARTGAADDLFRRGLLSK
CVTGWARAASESAAAAAAMHRQQLTRLALVAVLRRWRHHVAVAAAVRAAP
EGRTRRVARRCLCAWRAEAEKAAVSVVNRAAAAAAALRRRRLRNALELWS
HRSQGGRLSGPGGSRHGGPGLQQWRHRWLLRTCLAQWGPAAETSAIARVA
AVHAAAWRLAMARRAALKRWATRAAELWGQRLSGAGGVMLRRRLLLLRGW
RVWVERAAAGRWARDSDVVAVAAVRRRMAGHAFSILAARAASTVAVTMAV
RAATT
back to top

mRNA from alignment at P-wetherbeei_contig7869:2..1216-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7869.1.1 ID=mRNA_P-wetherbeei_contig7869.1.1|Name=mRNA_P-wetherbeei_contig7869.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1215bp|location=Sequence derived from alignment at P-wetherbeei_contig7869:2..1216- (Phaeothamnion wetherbeei SAG_119_79)
GCTGCGGAAAAGGTATGGGAGTCGGAGGAAATTGAGGCAGCGGAGAGAAG
GGCCGCTGTCGCGGCCGCTAGGCCCTTCTTCTGGGCGTGGCAGCGCGTGG
CCGCGGCAGCTCTACGAAAGACAGAACGGCGGCGCTGGCTGGACGCGGGG
CACCTTTTCTCAATGCGACGCCACGGGCTACGTCGTTGGCGGGGTCGAGT
CGAGCTCGCCGCCCGGGAAAGCCAGTCGCTCGCATTGGCCGCCTGTCATG
ACGGGTCTCGACTCCGCGTTTCCGGAGTTTCTCGTTGGCGTGCGCACGCG
AAAGCAGTTCAATTGGCAGCATCGGCAAACGCCGTAGAAGAGCGATGCCG
TCGAACGTCGCTTCGGACTGCACTGGCGGCCTTTCATGCCGCACTCGCTG
CGCGCACTGGGGCGGCAGATGACCTTTTCCGGCGTGGGCTGCTCAGCAAA
TGCGTGACAGGGTGGGCTCGTGCCGCGTCCGAGTCGGCCGCAGCCGCTGC
CGCAATGCACCGCCAGCAGCTGACGCGCCTGGCGCTCGTGGCAGTGCTTC
GGCGCTGGCGCCATCATGTGGCGGTCGCTGCGGCCGTTCGTGCGGCGCCG
GAAGGTCGGACTCGACGCGTGGCTCGCCGATGCCTCTGTGCCTGGCGGGC
TGAGGCGGAAAAGGCAGCCGTGTCAGTAGTCAACCGCGCCGCCGCGGCCG
CCGCCGCACTACGGCGCCGCCGCCTCCGAAACGCCCTAGAGCTCTGGTCC
CACCGATCCCAGGGCGGACGGCTGTCCGGCCCGGGCGGCAGCCGCCACGG
CGGCCCCGGGCTCCAGCAGTGGCGCCACCGCTGGCTGCTGCGGACGTGCC
TGGCGCAGTGGGGGCCGGCGGCAGAGACGTCCGCCATTGCCCGAGTCGCC
GCCGTCCACGCCGCCGCCTGGCGCCTCGCCATGGCCCGCCGCGCGGCGCT
CAAACGGTGGGCGACCCGCGCAGCCGAGCTTTGGGGCCAGCGGCTCTCCG
GCGCCGGCGGGGTTATGCTGCGCCGCCGTCTCCTGCTGCTCCGCGGCTGG
CGGGTCTGGGTGGAACGGGCGGCCGCCGGCCGGTGGGCGCGCGACAGCGA
CGTCGTAGCCGTCGCCGCCGTGCGGCGCCGGATGGCGGGGCACGCCTTCT
CGATCCTGGCTGCTAGGGCTGCATCGACCGTGGCGGTGACAATGGCGGTG
AGGGCAGCGACTACA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig7869:2..1216-

>mRNA_P-wetherbeei_contig7869.1.1 ID=mRNA_P-wetherbeei_contig7869.1.1|Name=mRNA_P-wetherbeei_contig7869.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1215bp|location=Sequence derived from alignment at P-wetherbeei_contig7869:2..1216- (Phaeothamnion wetherbeei SAG_119_79)
GCTGCGGAAAAGGTATGGGAGTCGGAGGAAATTGAGGCAGCGGAGAGAAG
GGCCGCTGTCGCGGCCGCTAGGCCCTTCTTCTGGGCGTGGCAGCGCGTGG
CCGCGGCAGCTCTACGAAAGACAGAACGGCGGCGCTGGCTGGACGCGGGG
CACCTTTTCTCAATGCGACGCCACGGGCTACGTCGTTGGCGGGGTCGAGT
CGAGCTCGCCGCCCGGGAAAGCCAGTCGCTCGCATTGGCCGCCTGTCATG
ACGGGTCTCGACTCCGCGTTTCCGGAGTTTCTCGTTGGCGTGCGCACGCG
AAAGCAGTTCAATTGGCAGCATCGGCAAACGCCGTAGAAGAGCGATGCCG
TCGAACGTCGCTTCGGACTGCACTGGCGGCCTTTCATGCCGCACTCGCTG
CGCGCACTGGGGCGGCAGATGACCTTTTCCGGCGTGGGCTGCTCAGCAAA
TGCGTGACAGGGTGGGCTCGTGCCGCGTCCGAGTCGGCCGCAGCCGCTGC
CGCAATGCACCGCCAGCAGCTGACGCGCCTGGCGCTCGTGGCAGTGCTTC
GGCGCTGGCGCCATCATGTGGCGGTCGCTGCGGCCGTTCGTGCGGCGCCG
GAAGGTCGGACTCGACGCGTGGCTCGCCGATGCCTCTGTGCCTGGCGGGC
TGAGGCGGAAAAGGCAGCCGTGTCAGTAGTCAACCGCGCCGCCGCGGCCG
CCGCCGCACTACGGCGCCGCCGCCTCCGAAACGCCCTAGAGCTCTGGTCC
CACCGATCCCAGGGCGGACGGCTGTCCGGCCCGGGCGGCAGCCGCCACGG
CGGCCCCGGGCTCCAGCAGTGGCGCCACCGCTGGCTGCTGCGGACGTGCC
TGGCGCAGTGGGGGCCGGCGGCAGAGACGTCCGCCATTGCCCGAGTCGCC
GCCGTCCACGCCGCCGCCTGGCGCCTCGCCATGGCCCGCCGCGCGGCGCT
CAAACGGTGGGCGACCCGCGCAGCCGAGCTTTGGGGCCAGCGGCTCTCCG
GCGCCGGCGGGGTTATGCTGCGCCGCCGTCTCCTGCTGCTCCGCGGCTGG
CGGGTCTGGGTGGAACGGGCGGCCGCCGGCCGGTGGGCGCGCGACAGCGA
CGTCGTAGCCGTCGCCGCCGTGCGGCGCCGGATGGCGGGGCACGCCTTCT
CGATCCTGGCTGCTAGGGCTGCATCGACCGTGGCGGTGACAATGGCGGTG
AGGGCAGCGACTACA
back to top