mRNA_P-wetherbeei_contig7858.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7858.1.1
Unique NamemRNA_P-wetherbeei_contig7858.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7858.1.1 vs. uniprot
Match: D8LJW0_ECTSI (ARL3, ARF-like Ras superfamily GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJW0_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 2.890e-54
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRTDHEARILVLGLDNAGKTTILKKLSEEDITHIMPTQGFNIKSLMHEGFKLNVWDIGGQKSIRPYWRNYFDQTDALV 264
            MGLLTLLRKLKR+D EARILVLGLDNAGKTTILKKLSEEDITHIMPTQGFNIKSLMHE FKLNVWDIGGQKSIRPYWRNYFDQTDAL+
Sbjct:    1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITHIMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALI 88
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BLAST of mRNA_P-wetherbeei_contig7858.1.1 vs. uniprot
Match: F0YG55_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YG55_AURAN)

HSP 1 Score: 174 bits (440), Expect = 3.080e-53
Identity = 83/88 (94.32%), Postives = 87/88 (98.86%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRTDHEARILVLGLDNAGKTTILKKLSEEDITHIMPTQGFNIKSLMHEGFKLNVWDIGGQKSIRPYWRNYFDQTDALV 264
            MGLLTLLRKLKRTD+EARILVLGLDN+GKTTILKKLSEEDI+HIMPTQGFNIKSLM +GFKLNVWDIGGQKSIRPYWRNYFDQTDALV
Sbjct:    1 MGLLTLLRKLKRTDNEARILVLGLDNSGKTTILKKLSEEDISHIMPTQGFNIKSLMQDGFKLNVWDIGGQKSIRPYWRNYFDQTDALV 88
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BLAST of mRNA_P-wetherbeei_contig7858.1.1 vs. uniprot
Match: A0A6S8UFF8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8UFF8_9STRA)

HSP 1 Score: 172 bits (436), Expect = 5.100e-53
Identity = 82/88 (93.18%), Postives = 87/88 (98.86%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRTDHEARILVLGLDNAGKTTILKKLSEEDITHIMPTQGFNIKSLMHEGFKLNVWDIGGQKSIRPYWRNYFDQTDALV 264
            MGLLTLLRKLKR+D+EARILVLGLDN+GKTTILKKLSEEDI+HIMPTQGFNIKSLM +GFKLNVWDIGGQKSIRPYWRNYFDQTDALV
Sbjct:    1 MGLLTLLRKLKRSDNEARILVLGLDNSGKTTILKKLSEEDISHIMPTQGFNIKSLMQDGFKLNVWDIGGQKSIRPYWRNYFDQTDALV 88
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BLAST of mRNA_P-wetherbeei_contig7858.1.1 vs. uniprot
Match: A0A835ZEJ4_9STRA (ARL3, ARF-like ras superfamily GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEJ4_9STRA)

HSP 1 Score: 172 bits (436), Expect = 6.740e-53
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRTDHEARILVLGLDNAGKTTILKKLSEEDITHIMPTQGFNIKSLMHEGFKLNVWDIGGQKSIRPYWRNYFDQTDALV 264
            MGLLTLLRKLKRTD EARILVLGLDNAGKTTILKKLSEEDIT IMPTQGFNIKSLMH+ FKLNVWDIGGQKSIRPYWRNYFDQTDAL+
Sbjct:    1 MGLLTLLRKLKRTDQEARILVLGLDNAGKTTILKKLSEEDITSIMPTQGFNIKSLMHDEFKLNVWDIGGQKSIRPYWRNYFDQTDALI 88
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BLAST of mRNA_P-wetherbeei_contig7858.1.1 vs. uniprot
Match: A0A7S0MCU9_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MCU9_9CRYP)

HSP 1 Score: 172 bits (435), Expect = 7.240e-53
Identity = 81/88 (92.05%), Postives = 86/88 (97.73%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRTDHEARILVLGLDNAGKTTILKKLSEEDITHIMPTQGFNIKSLMHEGFKLNVWDIGGQKSIRPYWRNYFDQTDALV 264
            MGLLTLLRKLKRTD EARILVLGLDNAGKTTILKKL++EDITH MPTQGFNIKS++HEGFKLNVWDIGGQK+IRPYWRNYFDQTDALV
Sbjct:    1 MGLLTLLRKLKRTDKEARILVLGLDNAGKTTILKKLADEDITHTMPTQGFNIKSVVHEGFKLNVWDIGGQKTIRPYWRNYFDQTDALV 88
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BLAST of mRNA_P-wetherbeei_contig7858.1.1 vs. uniprot
Match: A0A7S0LYW6_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LYW6_9CRYP)

HSP 1 Score: 169 bits (428), Expect = 1.010e-51
Identity = 79/88 (89.77%), Postives = 85/88 (96.59%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRTDHEARILVLGLDNAGKTTILKKLSEEDITHIMPTQGFNIKSLMHEGFKLNVWDIGGQKSIRPYWRNYFDQTDALV 264
            MGLLTLLRKLKRTD EARILVLGLDNAGKTT LK+L++EDITH MPTQGFNIKS++HEGFKLNVWDIGGQKSIRPYWRNYFDQTDA+V
Sbjct:    7 MGLLTLLRKLKRTDKEARILVLGLDNAGKTTALKRLADEDITHTMPTQGFNIKSVVHEGFKLNVWDIGGQKSIRPYWRNYFDQTDAMV 94
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BLAST of mRNA_P-wetherbeei_contig7858.1.1 vs. uniprot
Match: A0A7S3HPP9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HPP9_9STRA)

HSP 1 Score: 167 bits (423), Expect = 5.140e-51
Identity = 77/88 (87.50%), Postives = 86/88 (97.73%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRTDHEARILVLGLDNAGKTTILKKLSEEDITHIMPTQGFNIKSLMHEGFKLNVWDIGGQKSIRPYWRNYFDQTDALV 264
            MGLLTLLRKLK++D EAR+LVLGLDN+GKTTILKKLS+EDI+ IMPTQGFNIKSLMH+GFKLNVWDIGGQKSIRPYWRNY+DQTDAL+
Sbjct:    1 MGLLTLLRKLKKSDQEARLLVLGLDNSGKTTILKKLSDEDISQIMPTQGFNIKSLMHDGFKLNVWDIGGQKSIRPYWRNYYDQTDALI 88
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BLAST of mRNA_P-wetherbeei_contig7858.1.1 vs. uniprot
Match: A0A7S1G4R5_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G4R5_9STRA)

HSP 1 Score: 167 bits (424), Expect = 5.920e-51
Identity = 78/88 (88.64%), Postives = 85/88 (96.59%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRTDHEARILVLGLDNAGKTTILKKLSEEDITHIMPTQGFNIKSLMHEGFKLNVWDIGGQKSIRPYWRNYFDQTDALV 264
            MGLL+LLRKL RTD EARILVLGLDNAGKTTILKKLS+EDITHIMPTQGFNIKSLMH+GFKLNVWDIGGQK+IRPYWRNY++ TDAL+
Sbjct:   10 MGLLSLLRKLHRTDKEARILVLGLDNAGKTTILKKLSDEDITHIMPTQGFNIKSLMHDGFKLNVWDIGGQKTIRPYWRNYYESTDALI 97
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BLAST of mRNA_P-wetherbeei_contig7858.1.1 vs. uniprot
Match: A0A7R9YCL1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCL1_9STRA)

HSP 1 Score: 167 bits (423), Expect = 7.440e-51
Identity = 80/88 (90.91%), Postives = 82/88 (93.18%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRTDHEARILVLGLDNAGKTTILKKLSEEDITHIMPTQGFNIKSLMHEGFKLNVWDIGGQKSIRPYWRNYFDQTDALV 264
            MGLL LLRKLK TD EARILVLGLDNAGKTTILKKLS+ED+ HIMPTQGFNIKSLMH  FKLNVWDIGGQKSIRPYWRNYFDQTDALV
Sbjct:    1 MGLLNLLRKLKSTDREARILVLGLDNAGKTTILKKLSDEDVNHIMPTQGFNIKSLMHAEFKLNVWDIGGQKSIRPYWRNYFDQTDALV 88
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BLAST of mRNA_P-wetherbeei_contig7858.1.1 vs. uniprot
Match: A0A7S0YMS3_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YMS3_9CRYP)

HSP 1 Score: 164 bits (414), Expect = 1.130e-49
Identity = 77/88 (87.50%), Postives = 84/88 (95.45%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRTDHEARILVLGLDNAGKTTILKKLSEEDITHIMPTQGFNIKSLMHEGFKLNVWDIGGQKSIRPYWRNYFDQTDALV 264
            MGLLTLLRKLK+TD EARILVLGLDNAGKTT LKKL++EDIT  MPTQGFNIKS++H+GFKLNVWDIGGQK+IRPYWRNYFDQTDALV
Sbjct:    1 MGLLTLLRKLKKTDKEARILVLGLDNAGKTTALKKLADEDITTTMPTQGFNIKSVIHDGFKLNVWDIGGQKTIRPYWRNYFDQTDALV 88
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7858.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJW0_ECTSI2.890e-5495.45ARL3, ARF-like Ras superfamily GTPase n=2 Tax=Ecto... [more]
F0YG55_AURAN3.080e-5394.32Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A6S8UFF8_9STRA5.100e-5393.18Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A835ZEJ4_9STRA6.740e-5394.32ARL3, ARF-like ras superfamily GTPase n=1 Tax=Trib... [more]
A0A7S0MCU9_9CRYP7.240e-5392.05Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7S0LYW6_9CRYP1.010e-5189.77Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7S3HPP9_9STRA5.140e-5187.50Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S1G4R5_9STRA5.920e-5188.64Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7R9YCL1_9STRA7.440e-5190.91Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S0YMS3_9CRYP1.130e-4987.50Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7858contigP-wetherbeei_contig7858:331..624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LJW0
Preferred nameARL3
PFAMsArf
Model size294
Max annot lvl2759|Eukaryota
KEGG koko:K07944,ko:K07977,ko:K11278
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000166,GO:0000278,GO:0000281,GO:0000910,GO:0001655,GO:0001763,GO:0001822,GO:0001882,GO:0001883,GO:0002009,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0005874,GO:0005876,GO:0005881,GO:0005929,GO:0005930,GO:0006810,GO:0006892,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007049,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007264,GO:0007275,GO:0007399,GO:0007424,GO:0008017,GO:0008092,GO:0008150,GO:0009653,GO:0009888,GO:0009987,GO:0010970,GO:0012505,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0022008,GO:0022402,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030496,GO:0030705,GO:0031090,GO:0031503,GO:0031984,GO:0032391,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032838,GO:0035146,GO:0035147,GO:0035239,GO:0035295,GO:0035556,GO:0035639,GO:0035869,GO:0036064,GO:0036094,GO:0042073,GO:0042461,GO:0042995,GO:0043005,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044431,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0046530,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048754,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051301,GO:0051641,GO:0051649,GO:0051716,GO:0060271,GO:0060429,GO:0060446,GO:0060541,GO:0060562,GO:0061138,GO:0061640,GO:0065007,GO:0070925,GO:0071840,GO:0072001,GO:0097014,GO:0097159,GO:0097367,GO:0097458,GO:0097730,GO:0097731,GO:0097733,GO:0098588,GO:0098791,GO:0099080,GO:0099081,GO:0099111,GO:0099512,GO:0099513,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1901265,GO:1901363,GO:1903047
Exons1
Evalue4.74e-55
EggNOG OGsCOG1100@1|root,KOG0074@2759|Eukaryota
DescriptionGTP binding
Cds size294
COG categoryKLT
BRITEko00000,ko03036,ko04031
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187005.072604-CDS-P-wetherbeei_contig7858:330..6241683187005.072604-CDS-P-wetherbeei_contig7858:330..624Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7858 331..624 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7858.1.1prot_P-wetherbeei_contig7858.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7858 331..624 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7858.1.1

>prot_P-wetherbeei_contig7858.1.1 ID=prot_P-wetherbeei_contig7858.1.1|Name=mRNA_P-wetherbeei_contig7858.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=98bp
MGLLTLLRKLKRTDHEARILVLGLDNAGKTTILKKLSEEDITHIMPTQGF
NIKSLMHEGFKLNVWDIGGQKSIRPYWRNYFDQTDALVRDASSGWRV*
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mRNA from alignment at P-wetherbeei_contig7858:331..624-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7858.1.1 ID=mRNA_P-wetherbeei_contig7858.1.1|Name=mRNA_P-wetherbeei_contig7858.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=294bp|location=Sequence derived from alignment at P-wetherbeei_contig7858:331..624- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCCTGCTGACGCTGCTCCGAAAGCTCAAGCGGACGGACCACGAGGC
GCGCATCCTCGTGTTGGGGCTCGACAACGCGGGCAAGACGACCATCCTGA
AGAAGCTGTCGGAGGAGGACATCACGCACATCATGCCAACGCAGGGCTTC
AACATTAAGTCGCTCATGCATGAGGGATTCAAGCTCAACGTGTGGGACAT
CGGCGGGCAAAAGTCCATCCGCCCCTACTGGCGCAACTACTTCGACCAGA
CCGACGCGCTGGTGAGAGACGCTTCTTCGGGCTGGCGAGTGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7858:331..624-

>mRNA_P-wetherbeei_contig7858.1.1 ID=mRNA_P-wetherbeei_contig7858.1.1|Name=mRNA_P-wetherbeei_contig7858.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=294bp|location=Sequence derived from alignment at P-wetherbeei_contig7858:331..624- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCCTGCTGACGCTGCTCCGAAAGCTCAAGCGGACGGACCACGAGGC
GCGCATCCTCGTGTTGGGGCTCGACAACGCGGGCAAGACGACCATCCTGA
AGAAGCTGTCGGAGGAGGACATCACGCACATCATGCCAACGCAGGGCTTC
AACATTAAGTCGCTCATGCATGAGGGATTCAAGCTCAACGTGTGGGACAT
CGGCGGGCAAAAGTCCATCCGCCCCTACTGGCGCAACTACTTCGACCAGA
CCGACGCGCTGGTGAGAGACGCTTCTTCGGGCTGGCGAGTGTGA
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