mRNA_P-wetherbeei_contig1291.2.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1291.2.3
Unique NamemRNA_P-wetherbeei_contig1291.2.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1291.2.3 vs. uniprot
Match: D7FY66_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY66_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 9.150e-64
Identity = 113/199 (56.78%), Postives = 146/199 (73.37%), Query Frame = 1
Query:  370 EPEEMCFSARLDNAKSVTTLLSCLSNGTKKDQHARCEVSMDGLTFVVTSRAMSTQASGELRAAMFQAYDCEPGVHHFGINLITLLECLQVFGPSMLAQTSLSMSYHPLEGIFRLTLEEAGVFTSCEIRTLHEDDEGADYAMLAQAYRQHDEEGAIVMRSEYLKEPFQELADFPGASRVTFAVSQKAPFFQLSVAGSMGT 966
            E +E+ FS RLDNAKS+TT+LSCLS+GT+KDQ A+CEV+ + +T VV+ RA  TQA G L +++FQ YDC  G   FGINL TLLECLQ+FGP  LAQTS+SM+Y      FRLTLEE GVFTSCEIRT+H+D+E  +++ LA+A+ +  E    +++SE LKE FQELAD  GA+ V+    Q+AP  QLS  GS G+
Sbjct:  108 ESDEVIFSCRLDNAKSITTILSCLSHGTRKDQQAQCEVTKESMTLVVSGRAKYTQAQGSLDSSLFQEYDCVEGAK-FGINLTTLLECLQIFGPGSLAQTSVSMAYQEARATFRLTLEEGGVFTSCEIRTIHQDEEAMEFSTLAKAFGRSKEVCRCILKSEILKEAFQELADLNGATSVSVTFGQEAPHLQLSAKGSNGS 305          
BLAST of mRNA_P-wetherbeei_contig1291.2.3 vs. uniprot
Match: A0A835YYW5_9STRA (Repair protein Rad1/Rec1/Rad17-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYW5_9STRA)

HSP 1 Score: 205 bits (521), Expect = 1.910e-58
Identity = 110/205 (53.66%), Postives = 144/205 (70.24%), Query Frame = 1
Query:  355 AAATGEPEEM-CFSARLDNAKSVTTLLSCLSNGTKKDQHARCEVSMDGLTFVVTSRAMSTQASGELRAAMFQAYDCEPGVHHFGINLITLLECLQVFGPSMLAQTSLSMSYHPLEGIFRLTLEEAGVFTSCEIRTLHEDDEGADYAMLAQAYRQHDEEGAIVMRSEYLKEPFQELADFPGASRVTFAVSQKAPFFQLSVAGSMGT 966
            A A  E EE   FS R+DNA++VTT+LSCLS+G++K QHA+CE + +GLTFV+T +A  TQA G L   +FQAY+CE     FGINL  LLECLQ+FG  M A  S +++Y+P    F++TLEE GVFTSCE+RTL E+ +  ++A LA A+R   EE   ++RSE LKE FQELAD PGA+ + F  SQ AP  +LS +GS G+
Sbjct:   24 AEAEREAEEKDLFSCRIDNARAVTTVLSCLSHGSRKAQHAQCEATPEGLTFVITGKAKFTQAQGALSKDLFQAYECEEDGGRFGINLSMLLECLQIFG--MNASASAALAYYPGTATFKVTLEENGVFTSCELRTLVEESDAMEFAALAAAFRSSPEECRCIIRSETLKEAFQELADLPGAASIVFEASQHAPHLKLSTSGSYGS 226          
BLAST of mRNA_P-wetherbeei_contig1291.2.3 vs. uniprot
Match: A0A6H5JRH0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH0_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 3.070e-55
Identity = 104/199 (52.26%), Postives = 137/199 (68.84%), Query Frame = 1
Query:  370 EPEEMCFSARLDNAKSVTTLLSCLSNGTKKDQHARCEVSMDGLTFVVTSRAMSTQASGELRAAMFQAYDCEPGVHHFGINLITLLECLQVFGPSMLAQTSLSMSYHPLEGIFRLTLEEAGVFTSCEIRTLHEDDEGADYAMLAQAYRQHDEEGAIVMRSEYLKEPFQELADFPGASRVTFAVSQKAPFFQLSVAGSMGT 966
            E +E+ FS RLDNA+S+TT+LSCLS+GT+KDQ A+CEV+ + +T VV+ RA  TQA G L +++FQ YDC  G   FGINL TLLECLQ+FG   LAQTS+SM+Y      FRLTLE  GVFTSCEIRT+H+D+E   ++ LA+A+ +  E    +++ E     FQELAD  GA+ V+    Q+A   QL   GS G+
Sbjct:   29 ESDEVIFSCRLDNAESITTILSCLSHGTRKDQQAQCEVTKESMTLVVSGRAKYTQAQGSLDSSLFQEYDCVEGAK-FGINLTTLLECLQIFGRGSLAQTSVSMAYQEARATFRLTLEGGGVFTSCEIRTIHQDEEAMKFSTLAKAFGRSKEVCRCILKGE----AFQELADLNGATSVSVTFGQEATHLQLYAKGSNGS 222          
BLAST of mRNA_P-wetherbeei_contig1291.2.3 vs. uniprot
Match: A0A6H5JQZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQZ4_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 6.540e-47
Identity = 103/220 (46.82%), Postives = 139/220 (63.18%), Query Frame = 1
Query:  370 EPEEMCFSARLDNAKSVTTLLSCLSNGTKKDQHARCEVSMDGLTFVVTSRAMSTQASGELRAAMFQAYDCEPGVHHFGINLITLLECLQVFGPSMLAQTSLSMSY-------HPLEGIFRLTLEEAGVFTSCEIRTLHEDDEGADYAMLAQAYRQHDEEGAIVMRSEYLKEPFQELADFPGASRVTFAVSQKAPFFQLSVAGSMGTRCAIRANPGRSSSP 1008
            E +E+ FS RLDNA+S+TT+LSCLS+GT+KDQ A+CEV+ + +T VV+ RA  TQA G L +++FQ YDC  G   FGINL TLLECLQ+FGP  LAQTS+SM+Y       HP  G         GV    E++  +   E  +++ LA+A+ +  E    +++SE LKE FQELAD  GA+ V+    Q+A   QLS  GS G+R A+ A P    +P
Sbjct:   29 ESDEVIFSCRLDNAESITTILSCLSHGTRKDQQAQCEVTKESMTLVVSGRAKYTQAQGSLDSSLFQEYDCVEGAK-FGINLTTLLECLQIFGPGSLAQTSVSMAYQESDVPPHPGRG--------RGVH---ELQDKNHPPEAMEFSTLAKAFGRSKEVCRCILKSEILKEAFQELADLNGATSVSVTFGQEATHLQLSAKGSNGSRYAM-APPSSHGAP 235          
BLAST of mRNA_P-wetherbeei_contig1291.2.3 vs. uniprot
Match: A0A4D9CMN7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CMN7_9STRA)

HSP 1 Score: 170 bits (431), Expect = 1.030e-45
Identity = 90/196 (45.92%), Postives = 123/196 (62.76%), Query Frame = 1
Query:  376 EEMCFSARLDNAKSVTTLLSCLSNGTKKDQHARCEVSMDGLTFVVTSRAMSTQASGELRAAMFQAYDCEPGVHHFGINLITLLECLQVFGPSMLAQTSLSMSYHPLEGIFRLTLEEAGVFTSCEIRTLHEDDEGADYAMLAQAYRQHDEEGAIVMRSEYLKEPFQELADFPGASRVTFAVSQKAPFFQLSVAGSMG 963
            EE  FS R+D+ K +T  L+CLS+G++KDQ A+ EV+ +G+ F+VT RA  TQ+ G    A+FQA+ C+P    F I+L  LLECLQVFG + L  T L+MSY P +   RLTLEE GV T+CE+R L   ++  D A LA A+R   E    +++S+ LKE   EL+D PGA  V  +V+   P F L+  G  G
Sbjct:   14 EEPLFSCRIDSTKIITATLACLSDGSRKDQLAQVEVNNEGIVFIVTGRAKFTQSQGTFNRALFQAFQCQPEGGSFTIDLHLLLECLQVFGAASLTNTMLTMSYEPRKAALRLTLEEQGVLTTCEVRALEAGEDAFDLAALASAFRSRPEVLRAILKSDVLKEAISELSDLPGAGSVRVSVAPHEPNFHLATNGICG 209          
BLAST of mRNA_P-wetherbeei_contig1291.2.3 vs. uniprot
Match: A0A7S2WVI5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVI5_9STRA)

HSP 1 Score: 141 bits (356), Expect = 7.810e-35
Identity = 78/196 (39.80%), Postives = 126/196 (64.29%), Query Frame = 1
Query:  388 FSARLDNAKSVTTLLSCLSNGTKKDQH-ARCEVSMDGLTFVVTSRAMSTQASGELRAAMFQAYDC-EPGVHHFGINLITLLECLQVFGPSMLAQTSLSMSYHPLEGIFRLTLEEAGVFTSCEIRTLHEDDEGAD-YAMLAQAYRQHDEEGAIVMRSEYLKEPFQELADFPGASRVTFAVSQKAPFFQLSVAGSMGT 966
            FS RL++AK +  L+SCL++  K+ +H A C+V+  GL F +  RA + Q SG L   +F +++C E G   F +NL  +L+CL +FGP+ ++ T+++M+Y   + +F+LT+EE GVFT C+I+TL    +  D ++ L  ++R+  E   ++++SE+LKE   EL D  GAS V   +S  AP FQL+  G++GT
Sbjct:   20 FSCRLESAKELHALVSCLAHEKKRKEHIALCQVNDQGLNFSMNQRAKTIQVSGTLPRRVFSSFECHEHGA--FCLNLGMVLDCLSLFGPAAISSTAIAMTYSKEDAVFQLTMEEHGVFTRCDIQTLDGSAQDEDEFSQLTSSFRRDPEACKLILKSEFLKEALYELQDLSGASFVDVFISPTAPHFQLAATGNLGT 213          
BLAST of mRNA_P-wetherbeei_contig1291.2.3 vs. uniprot
Match: A0A7S2G8B6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G8B6_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.250e-29
Identity = 69/187 (36.90%), Postives = 109/187 (58.29%), Query Frame = 1
Query:  418 VTTLLSCLSNGTKKDQHARCEVSMDGLTFVVTSRAMSTQASGELRAAMFQAYDCEPGVHHFGINLITLLECLQVFGPSMLAQTS--LSMSYHPLEGIFRLTLEEAGVFTSCEIRTLHEDDE---GADYAMLAQAYRQHDEEGAIVMRSEYLKEPFQELADFPGASRVTFAVSQKAPFFQLSVAGSMG 963
            + ++L C+ NGT+KDQHA+C+V   G++F + SR+ +TQ +G +    F  ++C      F IN+ TLL+CL +FGP      S  ++MS+        L L+E GVFT C+I+ +  D +   GA +A  +  +RQ       +++SE LKE   EL D   A+R++  +S +AP FQ+S  GS+G
Sbjct:    1 IQSMLQCIVNGTRKDQHAQCQVHAGGISFSLQSRSRTTQVTGTMDKNCFTEFECYDDGGTFCINICTLLDCLSIFGPQQAGTNSTVVTMSFDKNLCQLILNLDEDGVFTRCDIQAIENDGDEEVGARFAQFSDEFRQKPSPCKCIVKSEQLKEALNELRDLNNATRLSVLLSPQAPHFQISAQGSLG 187          
BLAST of mRNA_P-wetherbeei_contig1291.2.3 vs. uniprot
Match: F0XY36_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XY36_AURAN)

HSP 1 Score: 92.4 bits (228), Expect = 3.930e-16
Identity = 67/205 (32.68%), Postives = 106/205 (51.71%), Query Frame = 1
Query:  385 CFSARLDNAKSVTTLLSCLSNGTKKDQHARCEVSMDGLTFVVTSRAMSTQASGELRAAMFQAYDC--EPGVHH----------FGINLITLLECLQVFGPSMLAQTSLSMSYHPLEGIFRLTLEEAGVFTSCEIRTLHEDDEGADYAMLAQAYRQHDEEGAIVMRSEYLKEPFQELADFPGASRVTFAVSQKAPFFQLSVAGSMG 963
            CFSARLD+A  VT+L+ CL    + +  A   +   GL   V  R+ ST A+  L  + F A+DC  E G             F +++  L+ECL++FG +  A   +S+SY P   +F+LTLEE G FTSC++  L + ++      +A A+R        +  S  L++    +ADF   S V  +  + +  F+L+ +GS+G
Sbjct:    3 CFSARLDSAALVTSLIECLIEEKRSEVVAHIAIDAAGLELHVVGRSKSTHATLTLPVSCFAAFDCVDETGAPFVRGGDQEPIAFSVDVRALVECLKLFGAAG-ADLEVSLSYAPATEVFKLTLEEPGAFTSCDVHVLEDSNDLEGATDMAGAFRDAPTAAKTLATSATLRDV---VADFD-ESAVGSSTIKVSVHFRLAASGSVG 202          
BLAST of mRNA_P-wetherbeei_contig1291.2.3 vs. uniprot
Match: A0A2I4BAI1_9TELE (cell cycle checkpoint protein RAD1 n=14 Tax=Aplocheiloidei TaxID=45443 RepID=A0A2I4BAI1_9TELE)

HSP 1 Score: 83.6 bits (205), Expect = 2.670e-14
Identity = 67/202 (33.17%), Postives = 105/202 (51.98%), Query Frame = 1
Query:  367 GEPEEMCFSARLDNAKSVTTLLSCLSNGTKKDQHARCEVSMDGLTFVVTSRAMSTQASGELRAAMFQAYDCEPGVHHFGINLITLLECLQVFGPSMLA--QTSLSMSYHPLEGIFRLTLEEAGVFTSCEIRTLHEDDEGADYAMLAQAYRQHDEEGAIVMRSEYLKEPFQELADFPGASRVTFAVSQKAPFFQLSVAGSMGT 966
            GE E+    A LDNA++++ LL  +S    KD HA   V+ +GL   V       QA+  ++A +FQ +  +  +  F +NL  LL+CL +FG S++A   T+L M Y        L LEE GV T C+I T  E +E  D+   +           ++++SE LKE F +L       ++T + +Q  P+F+LS  G+ G+
Sbjct:    9 GEDEQYVLVATLDNARNLSNLLKAISF---KD-HAIFTVTPNGLKVTVED-CKCVQANAFIQADIFQEFTIKEDLIAFQVNLTVLLDCLNIFGGSIVAGISTALRMCYRGYGYPLTLFLEEGGVVTVCKINT-EEPEEPIDFDFCSSNVT-----NKVILQSESLKEAFSDLDMTSEVLQITMSPNQ--PYFRLSTFGNSGS 197          
BLAST of mRNA_P-wetherbeei_contig1291.2.3 vs. uniprot
Match: A0A1Y1ZDX0_9FUNG (Cell cycle checkpoint protein RAD1 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1ZDX0_9FUNG)

HSP 1 Score: 80.5 bits (197), Expect = 4.330e-13
Identity = 62/221 (28.05%), Postives = 108/221 (48.87%), Query Frame = 1
Query:  388 FSARLDNAKSVTTLLSCLSNGTKKDQHARCEVSMDGLTFVVTSRAMSTQASGELRAAMFQAYDCEPGVHH--------FGINLITLLECLQVFG--------------------PSMLAQTSLSMSYHPLEGIFRLTLEEAGVFTSCEIRTLHEDDEGADYAMLAQAYRQHDEEGAIVMRSEYLKEPFQELADFPGASRVTFAVSQKAPFFQLSVAGSMGT 966
            F +RL N +S+  LL  +    +  + A C ++ +GL F V   +   QA   L++++FQ Y  +  +          FG+ L TL+ECL +FG                    P   +QT+L MSY        LTLE+ GV T C++ T   ++      +L+  ++++     I+M+SE+L++   EL D   + ++TF +S + P+F++S  G  G+
Sbjct:   16 FRSRLQNVRSLVVLLRAI----QFKERAVCTITPNGLKFSV-EESRCVQAHAYLQSSLFQEYQFDAPISSINSQENIVFGVQLNTLIECLNIFGTANLNQLGNTVTTNGTASTMPVFKSQTALVMSYEGYGANLVLTLEDNGVITVCKLSTFEPEN------LLSFNFQEYSITQKIIMKSEWLRDALSEL-DI-SSEKITFLISPQPPYFRMSTIGISGS 223          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1291.2.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7FY66_ECTSI9.150e-6456.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YYW5_9STRA1.910e-5853.66Repair protein Rad1/Rec1/Rad17-domain-containing p... [more]
A0A6H5JRH0_9PHAE3.070e-5552.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQZ4_9PHAE6.540e-4746.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9CMN7_9STRA1.030e-4545.92Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2WVI5_9STRA7.810e-3539.80Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2G8B6_9STRA1.250e-2936.90Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
F0XY36_AURAN3.930e-1632.68Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A2I4BAI1_9TELE2.670e-1433.17cell cycle checkpoint protein RAD1 n=14 Tax=Aploch... [more]
A0A1Y1ZDX0_9FUNG4.330e-1328.05Cell cycle checkpoint protein RAD1 n=1 Tax=Basidio... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1291contigP-wetherbeei_contig1291:5327..7129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FY66
Preferred nameRAD1
PFAMsRad1
Model size1391
Max annot lvl2759|Eukaryota
KEGG koko:K02830,ko:K05665
KEGG TC3.A.1.208.8
KEGG Pathwayko01523,ko02010,ko04071,ko04111,ko04113,ko04218,ko04977,ko05206,map01523,map02010,map04071,map04111,map04113,map04218,map04977,map05206
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000076,GO:0000077,GO:0000228,GO:0000278,GO:0000280,GO:0000723,GO:0000785,GO:0000792,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0004518,GO:0004527,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006278,GO:0006281,GO:0006289,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006996,GO:0007004,GO:0007049,GO:0007093,GO:0007095,GO:0007127,GO:0007131,GO:0007154,GO:0007165,GO:0007346,GO:0008150,GO:0008152,GO:0008219,GO:0008408,GO:0008630,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0010212,GO:0010389,GO:0010564,GO:0010639,GO:0010833,GO:0010948,GO:0010972,GO:0012501,GO:0016043,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0022402,GO:0022414,GO:0023052,GO:0030896,GO:0031570,GO:0031572,GO:0031573,GO:0031974,GO:0031981,GO:0032200,GO:0032991,GO:0033043,GO:0033313,GO:0033314,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0035825,GO:0035861,GO:0040020,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044773,GO:0044774,GO:0044818,GO:0045786,GO:0045835,GO:0045930,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051598,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0060249,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0071214,GO:0071478,GO:0071479,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0090734,GO:0097159,GO:0097190,GO:0097193,GO:0104004,GO:0140013,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903046,GO:1903047,GO:1990421,GO:2000241,GO:2000242
Exons3
Evalue7.7e-66
EggNOG OGsKOG3194@1|root,KOG3194@2759|Eukaryota
Ec32 ortholog descriptionRad1/Rec1/Rad17
Ec32 orthologEc-24_003630.1
EC3.1.11.2
Descriptionexodeoxyribonuclease III activity
Cds size1080
COG categoryV
BRITEko00000,ko00001,ko01000,ko02000,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185966.1612926-UTR-P-wetherbeei_contig1291:5326..53581683185966.1612926-UTR-P-wetherbeei_contig1291:5326..5358Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1291 5327..5358 -
1683185966.2038538-UTR-P-wetherbeei_contig1291:6850..71291683185966.2038538-UTR-P-wetherbeei_contig1291:6850..7129Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1291 6851..7129 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185966.1778417-CDS-P-wetherbeei_contig1291:5358..59521683185966.1778417-CDS-P-wetherbeei_contig1291:5358..5952Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1291 5359..5952 -
1683185966.1866078-CDS-P-wetherbeei_contig1291:6193..63221683185966.1866078-CDS-P-wetherbeei_contig1291:6193..6322Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1291 6194..6322 -
1683185966.1951153-CDS-P-wetherbeei_contig1291:6493..68501683185966.1951153-CDS-P-wetherbeei_contig1291:6493..6850Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1291 6494..6850 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1291.2.3prot_P-wetherbeei_contig1291.2.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1291 5359..6850 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1291.2.3

>prot_P-wetherbeei_contig1291.2.3 ID=prot_P-wetherbeei_contig1291.2.3|Name=mRNA_P-wetherbeei_contig1291.2.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=360bp
MEDDGVDQQARKEEADDGGEGNGGEAAATGEPEEMCFSARLDNAKSVTTL
LSCLSNGTKKDQHARCEVSMDGLTFVVTSRAMSTQASGELRAAMFQAYDC
EPGVHHFGINLITLLECLQVFGPSMLAQTSLSMSYHPLEGIFRLTLEEAG
VFTSCEIRTLHEDDEGADYAMLAQAYRQHDEEGAIVMRSEYLKEPFQELA
DFPGASRVTFAVSQKAPFFQLSVAGSMGTRCAIRANPGRSSSPLVGWLVD
LWSTPELHPRVSCYHFLFSRLQWSFFLFGELQEEREVCTISRRTFCDPVG
ELREAPTNWEIIFRNDAFSTPTRSVLLPLCSIFLPCTVHFLNTPIQPAQR
QKRLVACRQ*
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mRNA from alignment at P-wetherbeei_contig1291:5327..7129-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1291.2.3 ID=mRNA_P-wetherbeei_contig1291.2.3|Name=mRNA_P-wetherbeei_contig1291.2.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1803bp|location=Sequence derived from alignment at P-wetherbeei_contig1291:5327..7129- (Phaeothamnion wetherbeei SAG_119_79)
TCGACCGCTCCGAGCCGATCTTTACACCCTGTGGCACCCCCTGGATAACC GCTTCCCCTTTCTTCAGAAGGTCGTGCGCTACCTGATTGGGAAAGTGTTC GAAAAGGAACTCTTTCGCCTACTAGGCTTCCTGCGACATAGAGAAAAAAG CCGACGCCCCTGTCTCCACGTGACGAGCCCAGCTCTGCTCTTGGAGGAAG CGGGAAACCTCGCAGTTCGAAGAGGATCGTCGTCTCATCTTCACAGATTT GGACGCAGCAGCGCGCTCCCACAACGACAATGGAGGATGACGGCGTGGAT CAGCAGGCTAGGAAGGAAGAAGCCGACGATGGCGGCGAAGGCAACGGCGG AGAGGCTGCAGCGACAGGAGAGCCGGAAGAAATGTGTTTCTCAGCGCGCC TCGACAACGCCAAGAGCGTCACGACGCTGCTGTCGTGCTTGAGCAACGGC ACCAAGAAGGACCAGCACGCCCGCTGCGAAGTCTCGATGGACGGCCTCAC CTTTGTGGTGACCAGCCGCGCCATGTCGACGCAGGCCTCTGGCGAGCTCC GTGCGGCGATGTTTCAGGCGTACGACTGCGAGCCCGGCGTCCACCACTTC GGCATCAACCTTATAACGCTCCTCGAGTGCCTCCAAGTGCGATGTTTCTC CCACGACAAAGCCCCACTCGCGTTTTTCCGTTGATGTGGTAAAAGGCTGT TTGGAAAACTTGGAAAACAAAGACTAGGCGTTCATCGCAAAGCCGGACAC CTAATGGAGCGGGAGAGCTCGTGCTATCGTGCCCCGCTACCGCGCTATCA TTCCCAGGTGTTCGGTCCGAGCATGCTGGCACAAACGAGCCTTAGTATGT CGTACCACCCGTTGGAGGGCATCTTCCGCCTGACGCTCGAGGAGGCCGGC GTCTTTACGAGCTGCGAGATCCGCACGCTGCATGAGGTCCGTGCGTTCAC CAGAATTCCGCTTTTTTAGCAACGGAGCTAGCCATCAACGGTTTCCCGCT AGGAGACGAATTTGGGAAGAAATATACCTCTTCCCCTCCAGTGGTTCGTT TACTTCAAACTACGACTGTTTGCCGGTGTCGGCGACGGCATCGGCGTCTG TTGCGGCGGCTGCGGCGATGCCCATCTTTCACCGCTTTTGGGGGGACAAC CTGGATCGCGTTTTAAACATAACACAGGACGATGAAGGGGCGGACTACGC CATGCTGGCGCAGGCCTACCGGCAGCATGACGAGGAGGGCGCAATCGTCA TGCGCTCCGAGTACCTCAAGGAGCCATTCCAGGAGCTGGCCGACTTTCCG GGAGCCTCTAGGGTCACCTTTGCTGTCAGCCAGAAGGCACCCTTTTTCCA GCTCTCCGTCGCCGGTTCCATGGGCACCAGGTGCGCGATCCGCGCCAATC CGGGCAGGTCGTCCAGCCCGCTGGTTGGTTGGTTGGTCGATCTTTGGTCA ACACCTGAGTTACATCCGCGCGTCTCTTGCTACCATTTCCTTTTCTCTCG CCTTCAGTGGTCGTTCTTTTTATTTGGAGAGTTGCAGGAGGAAAGGGAGG TGTGTACAATAAGCAGAAGAACGTTTTGTGATCCTGTCGGTGAACTGAGA GAAGCACCGACAAATTGGGAAATCATCTTTCGCAATGACGCCTTCTCCAC GCCCACCCGGTCTGTGTTGCTTCCACTCTGTTCTATCTTCCTTCCTTGCA CCGTCCATTTCCTAAACACACCCATCCAACCTGCCCAAAGGCAGAAACGC CTCGTCGCCTGCCGCCAATGAAATCCCGCAACAGTAAAGTGGACTTCCCG AAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1291:5327..7129-

>mRNA_P-wetherbeei_contig1291.2.3 ID=mRNA_P-wetherbeei_contig1291.2.3|Name=mRNA_P-wetherbeei_contig1291.2.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1080bp|location=Sequence derived from alignment at P-wetherbeei_contig1291:5327..7129- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGATGACGGCGTGGATCAGCAGGCTAGGAAGGAAGAAGCCGACGA
TGGCGGCGAAGGCAACGGCGGAGAGGCTGCAGCGACAGGAGAGCCGGAAG
AAATGTGTTTCTCAGCGCGCCTCGACAACGCCAAGAGCGTCACGACGCTG
CTGTCGTGCTTGAGCAACGGCACCAAGAAGGACCAGCACGCCCGCTGCGA
AGTCTCGATGGACGGCCTCACCTTTGTGGTGACCAGCCGCGCCATGTCGA
CGCAGGCCTCTGGCGAGCTCCGTGCGGCGATGTTTCAGGCGTACGACTGC
GAGCCCGGCGTCCACCACTTCGGCATCAACCTTATAACGCTCCTCGAGTG
CCTCCAAGTGTTCGGTCCGAGCATGCTGGCACAAACGAGCCTTAGTATGT
CGTACCACCCGTTGGAGGGCATCTTCCGCCTGACGCTCGAGGAGGCCGGC
GTCTTTACGAGCTGCGAGATCCGCACGCTGCATGAGGACGATGAAGGGGC
GGACTACGCCATGCTGGCGCAGGCCTACCGGCAGCATGACGAGGAGGGCG
CAATCGTCATGCGCTCCGAGTACCTCAAGGAGCCATTCCAGGAGCTGGCC
GACTTTCCGGGAGCCTCTAGGGTCACCTTTGCTGTCAGCCAGAAGGCACC
CTTTTTCCAGCTCTCCGTCGCCGGTTCCATGGGCACCAGGTGCGCGATCC
GCGCCAATCCGGGCAGGTCGTCCAGCCCGCTGGTTGGTTGGTTGGTCGAT
CTTTGGTCAACACCTGAGTTACATCCGCGCGTCTCTTGCTACCATTTCCT
TTTCTCTCGCCTTCAGTGGTCGTTCTTTTTATTTGGAGAGTTGCAGGAGG
AAAGGGAGGTGTGTACAATAAGCAGAAGAACGTTTTGTGATCCTGTCGGT
GAACTGAGAGAAGCACCGACAAATTGGGAAATCATCTTTCGCAATGACGC
CTTCTCCACGCCCACCCGGTCTGTGTTGCTTCCACTCTGTTCTATCTTCC
TTCCTTGCACCGTCCATTTCCTAAACACACCCATCCAACCTGCCCAAAGG
CAGAAACGCCTCGTCGCCTGCCGCCAATGA
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