mRNA_P-wetherbeei_contig7854.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig7854.1.1 vs. uniprot
Match: D8LRX1_ECTSI (Vps8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRX1_ECTSI) HSP 1 Score: 97.1 bits (240), Expect = 3.560e-22 Identity = 42/70 (60.00%), Postives = 59/70 (84.29%), Query Frame = 1
Query: 1 MDGVLDTILSTVLDGMAGYVPLPAIVGKILLDHAGNTVGEFRHILLSMLETYAYETSIYSTAASLVFDHM 210
M GVLD +L L MAGYVPLPAIV K++ DHAG+++GEFRH++L+ML+TY+Y+T+I+ TAASL+F+ +
Sbjct: 1 MGGVLDALLQRTLSSMAGYVPLPAIVKKVVSDHAGSSLGEFRHVILAMLDTYSYDTAIHRTAASLLFESL 70
BLAST of mRNA_P-wetherbeei_contig7854.1.1 vs. uniprot
Match: A0A6H5JMF4_9PHAE (Vps8 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF4_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 9.110e-22 Identity = 42/70 (60.00%), Postives = 59/70 (84.29%), Query Frame = 1
Query: 1 MDGVLDTILSTVLDGMAGYVPLPAIVGKILLDHAGNTVGEFRHILLSMLETYAYETSIYSTAASLVFDHM 210
M GVLD +L L MAGYVPLPAIV K++ DHAG+++GEFRH++L+ML+TY+Y+T+I+ TAASL+F+ +
Sbjct: 2239 MGGVLDALLQRTLSSMAGYVPLPAIVKKVVSDHAGSSLGEFRHVILAMLDTYSYDTAIHRTAASLLFESL 2308
BLAST of mRNA_P-wetherbeei_contig7854.1.1 vs. uniprot
Match: A0A7S2GX04_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GX04_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 7.950e-16 Identity = 40/75 (53.33%), Postives = 51/75 (68.00%), Query Frame = 1
Query: 1 MDGVLDTILSTVLDGMAGYVPLPAIVGKILLDHAGNTVGEFRHILLSMLETYAYETSIYSTAASLVFDHMTRLSK 225
++ VL ++ LD M+ +VPLP IV KI DH+G +GE R ILLSML+TY YET+IY TA SLV + RL K
Sbjct: 423 LEAVLTEMIQRTLDKMSAFVPLPRIVRKITDDHSGMELGELRDILLSMLDTYTYETNIYRTAVSLVATDLRRLCK 497
BLAST of mRNA_P-wetherbeei_contig7854.1.1 vs. uniprot
Match: A0A836CF74_9STRA (Golgi CORVET complex core vacuolar protein 8-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF74_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 1.970e-12 Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 1
Query: 16 DTILSTVLDGMAGYVPLPAIVGKILLDHAGNTVGEFRHILLSMLETYAYETSIYSTAASLVF 201
D +L +L+GM GYVPLPAIVGK+L DHA +GEF+ ++ SML + ET +Y AA L+F
Sbjct: 1073 DILLQRLLEGMTGYVPLPAIVGKVLSDHAQAPLGEFKGLIQSMLVACSRETDVYRAAAVLLF 1134
BLAST of mRNA_P-wetherbeei_contig7854.1.1 vs. uniprot
Match: A0A1D1XH83_9ARAE (Vacuolar protein sorting-associated protein 8 (Fragment) n=2 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XH83_9ARAE) HSP 1 Score: 68.9 bits (167), Expect = 6.920e-12 Identity = 31/65 (47.69%), Postives = 41/65 (63.08%), Query Frame = 1
Query: 10 VLDTILSTVLDGMAGYVPLPAIVGKILLDHAGNTVGEFRHILLSMLETYAYETSIYSTAASLVFD 204
+ + V++GM GYVPLPAI+GK+L D+ G G F+ LL +L TY YE I TA SL+ D
Sbjct: 1671 IFSQFIKEVVEGMVGYVPLPAIMGKLLADNGGQEFGNFKFTLLGLLGTYGYERRILGTAKSLIED 1735
BLAST of mRNA_P-wetherbeei_contig7854.1.1 vs. uniprot
Match: A0A843VW62_COLES (RING-type domain-containing protein (Fragment) n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843VW62_COLES) HSP 1 Score: 66.2 bits (160), Expect = 6.080e-11 Identity = 29/65 (44.62%), Postives = 42/65 (64.62%), Query Frame = 1
Query: 10 VLDTILSTVLDGMAGYVPLPAIVGKILLDHAGNTVGEFRHILLSMLETYAYETSIYSTAASLVFD 204
+L + +++GM GYVPLPAI+GK+L ++ G G+F+ LL +L TY YE I TA L+ D
Sbjct: 423 ILSQFIKEIVEGMVGYVPLPAIMGKLLAENGGQEFGDFKLTLLGLLGTYGYERRILGTAKLLIED 487
BLAST of mRNA_P-wetherbeei_contig7854.1.1 vs. uniprot
Match: A0A6I9QH23_ELAGV (vacuolar protein sorting-associated protein 8 homolog isoform X1 n=8 Tax=Arecaceae TaxID=4710 RepID=A0A6I9QH23_ELAGV) HSP 1 Score: 65.9 bits (159), Expect = 8.410e-11 Identity = 29/65 (44.62%), Postives = 41/65 (63.08%), Query Frame = 1
Query: 10 VLDTILSTVLDGMAGYVPLPAIVGKILLDHAGNTVGEFRHILLSMLETYAYETSIYSTAASLVFD 204
V + +++GMAG+VPLP I+GK+L D+ G+F+ +L ML TY YE I TA SL+ D
Sbjct: 1661 VFSQFVGEIIEGMAGFVPLPVIMGKLLSDNGNQEFGDFKFTILKMLGTYGYERRILDTAKSLIED 1725
BLAST of mRNA_P-wetherbeei_contig7854.1.1 vs. uniprot
Match: A0A7S0G8R6_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G8R6_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 4.070e-10 Identity = 28/63 (44.44%), Postives = 44/63 (69.84%), Query Frame = 1
Query: 10 VLDTILSTVLDGMAGYVPLPAIVGKILLDHAGNTVGEFRHILLSMLETYAYETSIYSTAASLV 198
V+ +L ++ M VPLP I+ KI +DHAG+ +GEFR +++SML+TY +E I+S AA ++
Sbjct: 87 VISDLLQLIMQRMVSNVPLPDILHKITVDHAGSKLGEFRDMIMSMLKTYNFELQIFSKAAEVL 149
BLAST of mRNA_P-wetherbeei_contig7854.1.1 vs. uniprot
Match: A0A833REY6_9POAL (Vacuolar protein sorting-associated protein 8 isoform X4 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833REY6_9POAL) HSP 1 Score: 62.8 bits (151), Expect = 1.020e-9 Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 1
Query: 10 VLDTILSTVLDGMAGYVPLPAIVGKILLDHAGNTVGEFRHILLSMLETYAYETSIYSTAASLVFD 204
V + +++GMAG +PLPAI+ K+L D G+F+ I+L ML TY YE I TA S++ D
Sbjct: 1606 VFSQFVGEIIEGMAGCIPLPAIMAKLLSDSGNQEFGDFKLIILKMLSTYGYEKRILDTAKSVIED 1670
BLAST of mRNA_P-wetherbeei_contig7854.1.1 vs. uniprot
Match: A0A2I0AWR9_9ASPA (RING-type domain-containing protein n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AWR9_9ASPA) HSP 1 Score: 62.8 bits (151), Expect = 1.020e-9 Identity = 26/61 (42.62%), Postives = 40/61 (65.57%), Query Frame = 1
Query: 22 ILSTVLDGMAGYVPLPAIVGKILLDHAGNTVGEFRHILLSMLETYAYETSIYSTAASLVFD 204
++ +++GM GY+PLPA++ K+L D+ G+F+ +L ML TY YE I TA SL+ D
Sbjct: 1704 LIGEIIEGMTGYLPLPAVMAKLLSDNGNQEFGDFKFTILKMLGTYNYERRILDTAKSLIED 1764 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7854.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig7854.1.1 >prot_P-wetherbeei_contig7854.1.1 ID=prot_P-wetherbeei_contig7854.1.1|Name=mRNA_P-wetherbeei_contig7854.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=76bp MDGVLDTILSTVLDGMAGYVPLPAIVGKILLDHAGNTVGEFRHILLSMLEback to top mRNA from alignment at P-wetherbeei_contig7854:168..661- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig7854.1.1 ID=mRNA_P-wetherbeei_contig7854.1.1|Name=mRNA_P-wetherbeei_contig7854.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=494bp|location=Sequence derived from alignment at P-wetherbeei_contig7854:168..661- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig7854:168..661- >mRNA_P-wetherbeei_contig7854.1.1 ID=mRNA_P-wetherbeei_contig7854.1.1|Name=mRNA_P-wetherbeei_contig7854.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=228bp|location=Sequence derived from alignment at P-wetherbeei_contig7854:168..661- (Phaeothamnion wetherbeei SAG_119_79)back to top |