mRNA_P-wetherbeei_contig7853.1.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7853.1.3
Unique NamemRNA_P-wetherbeei_contig7853.1.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig7853.1.3 vs. uniprot
Match: G4ZPR3_PHYSP (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4ZPR3_PHYSP)

HSP 1 Score: 102 bits (255), Expect = 4.500e-22
Identity = 49/60 (81.67%), Postives = 58/60 (96.67%), Query Frame = 2 
Query:  527 FGNVISARIMVDKQSGRSRGFGFVSFDYRPSAESAIKGMNGYQIGRKRLKVQHKKEKDRG 706
            FGNVISARIMV+K++GRSRGFGFVS+D  PSAE+AIKGMNG+Q+GRKRLKVQHKKEK++G
Sbjct:  174 FGNVISARIMVEKETGRSRGFGFVSYDNAPSAEAAIKGMNGFQVGRKRLKVQHKKEKNQG 233
[Close]
BLAST of mRNA_P-wetherbeei_contig7853.1.3 vs. uniprot
Match: D0NCQ3_PHYIT (CUG-BP-and ETR-3-like factor, putative n=5 Tax=Phytophthora TaxID=4783 RepID=D0NCQ3_PHYIT)

HSP 1 Score: 102 bits (254), Expect = 5.780e-22
Identity = 49/60 (81.67%), Postives = 57/60 (95.00%), Query Frame = 2 
Query:  527 FGNVISARIMVDKQSGRSRGFGFVSFDYRPSAESAIKGMNGYQIGRKRLKVQHKKEKDRG 706
            FGNVISARIMV+K++GRSRGFGFVS+D  PSAE+AIKGMNG+Q+GRKRLKVQHKKEK +G
Sbjct:  172 FGNVISARIMVEKETGRSRGFGFVSYDNAPSAEAAIKGMNGFQVGRKRLKVQHKKEKSQG 231
[Close]
BLAST of mRNA_P-wetherbeei_contig7853.1.3 vs. uniprot
Match: H3GBP4_PHYRM (Uncharacterized protein n=12 Tax=Phytophthora TaxID=4783 RepID=H3GBP4_PHYRM)

HSP 1 Score: 102 bits (254), Expect = 7.180e-22
Identity = 49/60 (81.67%), Postives = 57/60 (95.00%), Query Frame = 2 
Query:  527 FGNVISARIMVDKQSGRSRGFGFVSFDYRPSAESAIKGMNGYQIGRKRLKVQHKKEKDRG 706
            FGNVISARIMV+K++GRSRGFGFVS+D  PSAE+AIKGMNG+Q+GRKRLKVQHKKEK +G
Sbjct:  181 FGNVISARIMVEKETGRSRGFGFVSYDNAPSAEAAIKGMNGFQVGRKRLKVQHKKEKSQG 240
[Close]
BLAST of mRNA_P-wetherbeei_contig7853.1.3 vs. uniprot
Match: A0A425DDE5_9STRA (RRM domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425DDE5_9STRA)

HSP 1 Score: 101 bits (252), Expect = 7.870e-22
Identity = 49/63 (77.78%), Postives = 57/63 (90.48%), Query Frame = 2 
Query:  527 FGNVISARIMVDKQSGRSRGFGFVSFDYRPSAESAIKGMNGYQIGRKRLKVQHKKEKDRGADV 715
            FGNVISARIMV+K+SGRSRGFGFVS+D  PSA++AIKGMNG+Q+GRKRLKVQHKKEK  G  +
Sbjct:  167 FGNVISARIMVEKESGRSRGFGFVSYDNAPSADAAIKGMNGFQVGRKRLKVQHKKEKGSGGGL 229
[Close]
BLAST of mRNA_P-wetherbeei_contig7853.1.3 vs. uniprot
Match: A0A024URK9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024URK9_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.060e-21
Identity = 49/63 (77.78%), Postives = 57/63 (90.48%), Query Frame = 2 
Query:  527 FGNVISARIMVDKQSGRSRGFGFVSFDYRPSAESAIKGMNGYQIGRKRLKVQHKKEKDRGADV 715
            FGNVISARIMV+K++GRSRGFGFVS+D  PSA++AIKGMNGYQ+GRKRLKVQHKKEK  G  +
Sbjct:  198 FGNVISARIMVEKETGRSRGFGFVSYDNAPSADAAIKGMNGYQVGRKRLKVQHKKEKGSGGGL 260
[Close]
BLAST of mRNA_P-wetherbeei_contig7853.1.3 vs. uniprot
Match: A0A3R7MR42_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7MR42_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.260e-21
Identity = 48/60 (80.00%), Postives = 58/60 (96.67%), Query Frame = 2 
Query:  527 FGNVISARIMVDKQSGRSRGFGFVSFDYRPSAESAIKGMNGYQIGRKRLKVQHKKEKDRG 706
            FGNVISARIMV+K++GRSRGFGFVS+D  PSA++AIKGMNG+Q+GRKRLKVQHKKEK++G
Sbjct:  175 FGNVISARIMVEKETGRSRGFGFVSYDNAPSADAAIKGMNGFQVGRKRLKVQHKKEKNQG 234
[Close]
BLAST of mRNA_P-wetherbeei_contig7853.1.3 vs. uniprot
Match: W4HAQ7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HAQ7_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.360e-21
Identity = 49/63 (77.78%), Postives = 57/63 (90.48%), Query Frame = 2 
Query:  527 FGNVISARIMVDKQSGRSRGFGFVSFDYRPSAESAIKGMNGYQIGRKRLKVQHKKEKDRGADV 715
            FGNVISARIMV+K+SGRSRGFGFVS+D  PSA++AIKGMNG+Q+GRKRLKVQHKKEK  G  +
Sbjct:  194 FGNVISARIMVEKESGRSRGFGFVSYDNAPSADAAIKGMNGFQVGRKRLKVQHKKEKGSGGGL 256
[Close]
BLAST of mRNA_P-wetherbeei_contig7853.1.3 vs. uniprot
Match: A0A3M6VNC0_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VNC0_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.550e-21
Identity = 48/60 (80.00%), Postives = 57/60 (95.00%), Query Frame = 2 
Query:  527 FGNVISARIMVDKQSGRSRGFGFVSFDYRPSAESAIKGMNGYQIGRKRLKVQHKKEKDRG 706
            FGNVISARIMV+K++GRSRGFGFVS+D  PSA++AIKGMNG+Q+GRKRLKVQHKKEK +G
Sbjct:  170 FGNVISARIMVEKETGRSRGFGFVSYDNAPSADAAIKGMNGFQVGRKRLKVQHKKEKSQG 229
[Close]
BLAST of mRNA_P-wetherbeei_contig7853.1.3 vs. uniprot
Match: M4B497_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B497_HYAAE)

HSP 1 Score: 101 bits (251), Expect = 1.820e-21
Identity = 48/60 (80.00%), Postives = 57/60 (95.00%), Query Frame = 2 
Query:  527 FGNVISARIMVDKQSGRSRGFGFVSFDYRPSAESAIKGMNGYQIGRKRLKVQHKKEKDRG 706
            FGNVISARIMV+K++GRSRGFGFVS+D  PSA++AIKGMNG+Q+GRKRLKVQHKKEK +G
Sbjct:  178 FGNVISARIMVEKETGRSRGFGFVSYDNAPSADAAIKGMNGFQVGRKRLKVQHKKEKSQG 237
[Close]
BLAST of mRNA_P-wetherbeei_contig7853.1.3 vs. uniprot
Match: A0A397DRE1_9STRA (RRM domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DRE1_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.830e-21
Identity = 49/63 (77.78%), Postives = 57/63 (90.48%), Query Frame = 2 
Query:  527 FGNVISARIMVDKQSGRSRGFGFVSFDYRPSAESAIKGMNGYQIGRKRLKVQHKKEKDRGADV 715
            FGNVISARIMV+K+SGRSRGFGFVS+D  PSA++AIKGMNG+Q+GRKRLKVQHKKEK  G  +
Sbjct:  210 FGNVISARIMVEKESGRSRGFGFVSYDNAPSADAAIKGMNGFQVGRKRLKVQHKKEKGSGGGL 272
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7853.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
G4ZPR3_PHYSP4.500e-2281.67Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
D0NCQ3_PHYIT5.780e-2281.67CUG-BP-and ETR-3-like factor, putative n=5 Tax=Phy... [more]
H3GBP4_PHYRM7.180e-2281.67Uncharacterized protein n=12 Tax=Phytophthora TaxI... [more]
A0A425DDE5_9STRA7.870e-2277.78RRM domain-containing protein n=2 Tax=Aphanomyces ... [more]
A0A024URK9_9STRA1.060e-2177.78Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A3R7MR42_9STRA1.260e-2180.00Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
W4HAQ7_9STRA1.360e-2177.78Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A3M6VNC0_9STRA1.550e-2180.00Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
M4B497_HYAAE1.820e-2180.00Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A397DRE1_9STRA1.830e-2177.78RRM domain-containing protein n=2 Tax=Aphanomyces ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7853contigP-wetherbeei_contig7853:788..2361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog67593.Physo130259
PFAMsRRM_1,WW
Model size930
Max annot lvl4776|Peronosporales
KEGG koko:K13207
Hectar predicted targeting categorysignal peptide
Exons3
Evalue7.41e-24
EggNOG OGsKOG0144@1|root,KOG0144@2759|Eukaryota,3QEHC@4776|Peronosporales
DescriptionDomain with 2 conserved Trp (W) residues
Cds size639
COG categoryA
BRITEko00000,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187004.7467945-CDS-P-wetherbeei_contig7853:787..8261683187004.7467945-CDS-P-wetherbeei_contig7853:787..826Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7853 788..826 -
1683187004.7569458-CDS-P-wetherbeei_contig7853:1139..13731683187004.7569458-CDS-P-wetherbeei_contig7853:1139..1373Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7853 1140..1373 -
1683187004.7655866-CDS-P-wetherbeei_contig7853:1706..20721683187004.7655866-CDS-P-wetherbeei_contig7853:1706..2072Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7853 1707..2072 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187004.7737446-UTR-P-wetherbeei_contig7853:2072..23611683187004.7737446-UTR-P-wetherbeei_contig7853:2072..2361Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7853 2073..2361 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7853.1.3prot_P-wetherbeei_contig7853.1.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7853 788..2072 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7853.1.3

>prot_P-wetherbeei_contig7853.1.3 ID=prot_P-wetherbeei_contig7853.1.3|Name=mRNA_P-wetherbeei_contig7853.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=213bp
MESWWPACASALLRLFARGKPPVSAHLRPVPLRPPYALFTEFIAHIHFVV
LSLRSPSFHSSFVSDLFFRSQSFALGINQFGNVISARIMVDKQSGRSRGF
GFVSFDYRPSAESAIKGMNGYQIGRKRLKVQHKKEKDRGADVARRVTTRT
HGSLPQFRQDDGLHDGGIDGLTDEERQEYEAAAAAAAHHQAHLAGGGGDE
RVHGADVDGVGAP
back to top

mRNA from alignment at P-wetherbeei_contig7853:788..2361-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7853.1.3 ID=mRNA_P-wetherbeei_contig7853.1.3|Name=mRNA_P-wetherbeei_contig7853.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1574bp|location=Sequence derived from alignment at P-wetherbeei_contig7853:788..2361- (Phaeothamnion wetherbeei SAG_119_79)
GGTCCGGATGGGTGCAACCTCTTTGTATTTCATATTCCCAACGACATGAC
AAACATGGACCTCTACAGCTTGTTCGCCCAGGTGGTGCCGAATGCATTTC
CGCCTCTAGACTTGTTTCGGTTTGTTGGTATCTTTTGGCGGCGTTCTGTT
TTGCCACAATTTATCTTCGACCCTTGCCATACCGGTTCGCGCCTGCTGTA
TACGGACGTTAATTCGGATCTTTTTGAGTCGTGGAGGCTTTGTATCGCAT
CGCTGGCACTGAATCGTCCCCTCGTGTCACTTGTCAAGCATGGAGAGCTG
GTGGCCAGCCTGTGCTTCCGCCTTGCTGCGTCTTTTTGCCCGAGGCAAGC
CTCCAGTGTCCGCCCATCTGCGGCCGGTGCCGTTACGGCCACCGTACGCG
CTTTTCACGGAATTCATTGCTCACATTCATTTTGTTGTACTCTCGCTTCG
CTCTCCTTCCTTCCATTCTTCCTTCGTTTCCGACCTTTTTTTCCGCTCTC
AATCATTTGCTCTTGGAATAAATCAGTTCGGCAACGTGATCAGCGCGCGC
ATCATGGTAGACAAGCAGTCGGGGCGCAGCCGCGGCTTCGGCTTTGTGAG
CTTCGACTACCGACCGTCCGCTGAGAGTGCCATCAAGGGCATGAACGGCT
ACCAGGCAAGCATAGAGCAACCGCTAGAATTACTCCGGCTCCTAGGCAGT
CTCTTGGCAGCTAGCGATTTATTGAGGTAGCAACGGAGGCAGTCGATAAG
GTAGGCCTGCCAGCTGGCCAGCTAGTTTTGTAGCCAGCCAACGACAAATC
TAGTGCTCGATGCGAAGCTTATAGATTGAGAGCAGCGGAGTCAACAGGGC
TATTGCGTCGCTATTGCGGAATTGATGGTTTGGCTGCCAAGATACAGTTA
GGCCATGGCCACCCCATTAACCTACAACTGCGTTTTACCTGACAGCCGCA
TCACCGCCGCCTAACCACCGCCTCAACCGCCGCCGCAGATCGGGCGCAAG
CGGCTTAAGGTGCAGCACAAGAAGGAGAAGGACCGCGGCGCCGATGTCGC
CCGACGGGTGACGACGCGGACGCACGGGTCGCTCCCGCAGTTCCGGCAAG
ATGACGGTCTCCACGACGGCGGCATCGACGGGCTGACGGACGAGGAGCGA
CAGGAGTACGAAGCCGCGGCGGCGGCGGCGGCGCACCACCAGGCGCACCT
TGCCGGCGGTGGCGGCGATGAGGTGAGCAGGGCGATGGTCTCTCTTGAAG
CATGCATGACTGGTGTATAGCGGTGCAGTGAAAGAACTCGCGATTTCCGT
CGCAGGTCTAAAATTAGAAGCTTCAAGCTGCTGTGTTGCAATCTCGTTTC
TTCGGATGTTAAATCCTGTCTATATATTCCGTCCTTTCGTTAAACCTACT
GCTACGTTCTTGATTTTATGCCATCGCAGCACAAAGTGTAACATGCGCTG
GCAGTGTCAAGTCATCGTCCTCATCCAACTTTCCGCGTTTCTCTTTTGCG
CAACTGTCCACACTTTTCCCGACCAAAAATTGCAGCGTGTGCACGGTGCA
GACGTCGATGGCGTGGGGGCACCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig7853:788..2361-

>mRNA_P-wetherbeei_contig7853.1.3 ID=mRNA_P-wetherbeei_contig7853.1.3|Name=mRNA_P-wetherbeei_contig7853.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=639bp|location=Sequence derived from alignment at P-wetherbeei_contig7853:788..2361- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGAGCTGGTGGCCAGCCTGTGCTTCCGCCTTGCTGCGTCTTTTTGC
CCGAGGCAAGCCTCCAGTGTCCGCCCATCTGCGGCCGGTGCCGTTACGGC
CACCGTACGCGCTTTTCACGGAATTCATTGCTCACATTCATTTTGTTGTA
CTCTCGCTTCGCTCTCCTTCCTTCCATTCTTCCTTCGTTTCCGACCTTTT
TTTCCGCTCTCAATCATTTGCTCTTGGAATAAATCAGTTCGGCAACGTGA
TCAGCGCGCGCATCATGGTAGACAAGCAGTCGGGGCGCAGCCGCGGCTTC
GGCTTTGTGAGCTTCGACTACCGACCGTCCGCTGAGAGTGCCATCAAGGG
CATGAACGGCTACCAGATCGGGCGCAAGCGGCTTAAGGTGCAGCACAAGA
AGGAGAAGGACCGCGGCGCCGATGTCGCCCGACGGGTGACGACGCGGACG
CACGGGTCGCTCCCGCAGTTCCGGCAAGATGACGGTCTCCACGACGGCGG
CATCGACGGGCTGACGGACGAGGAGCGACAGGAGTACGAAGCCGCGGCGG
CGGCGGCGGCGCACCACCAGGCGCACCTTGCCGGCGGTGGCGGCGATGAG
CGTGTGCACGGTGCAGACGTCGATGGCGTGGGGGCACCG
back to top