mRNA_P-wetherbeei_contig7848.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7848.1.1
Unique NamemRNA_P-wetherbeei_contig7848.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7848.1.1 vs. uniprot
Match: D8LB83_ECTSI (WD-40 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB83_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 1.100e-43
Identity = 104/213 (48.83%), Postives = 128/213 (60.09%), Query Frame = 3 
Query:   18 DKDSEQLQRCLESVFSSDRVPEQLITSVEQILRTNRAVQRRFLGVLRQPAQRRHAHGLRRSGGGFGGNGRGHQPVVLHGPSFETLARLSYTLLCVCVDSEDYDTAHVLLQLTGAFFQVHEGGTSM----PGGSSLVEHSGGGKPCGASGDEMHNXXXKGXXXXXXXXXXGVQQQQSQGPRYFSEFLSARIRRHPIFADMRFWRHILLQQIEAK 644
            D+DSE+L +CLE+V+SSDRV E+++  VE+ LRT   VQ+ FL VLR  +QR +A            + RG  P +LHGPSFETLAR SYTLLCVCVD  DY  AH LLQLTG +FQVHEGG  M    PGG+ +   + GG      G E                         + P YFSEFLSARI RHPIF DMRFW+H+L + ++AK
Sbjct: 1700 DRDSEKLLQCLEAVYSSDRVSEEVVMDVEETLRTKPVVQKMFLQVLRHASQRGYA------------SSRG--PTLLHGPSFETLARFSYTLLCVCVDRVDYSVAHTLLQLTGNYFQVHEGGGDMFRGQPGGAGVP--AAGGXXXXXXGGE------------------------GEQPGYFSEFLSARICRHPIFTDMRFWQHVLSEAVQAK 1872
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BLAST of mRNA_P-wetherbeei_contig7848.1.1 vs. uniprot
Match: A0A6H5KB05_9PHAE (UDENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB05_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 3.140e-42
Identity = 105/217 (48.39%), Postives = 129/217 (59.45%), Query Frame = 3 
Query:   18 DKDSEQLQRCLESVFSSDRVPEQLITSVEQILRTNRAVQRRFLGVLRQPAQRRHAHGLRRSGGGFGGNGRGHQPVVLHGPSFETLARLSYTLLCVCVDSEDYDTAHVLLQLTGAFFQ---VHEGGTSM----PGGSSLVEHSGG-GKPCGASGDEMHNXXXKGXXXXXXXXXXGVQQQQSQGPRYFSEFLSARIRRHPIFADMRFWRHILLQQIEAK 644
            D+DSE+L +CLE+V+SSDRV E+++  VE+ LRT  AVQ+ FL VLR  ++R +A            + RG  P +LHGPSFETLAR SYTLLCVCVD  DY  AH LLQLTG +FQ   VHEGG  M    PGG  +    GG G   G  G++                           P YFSEFLSARI RHPIF DMRFW+H+L + ++AK
Sbjct: 1751 DRDSEKLLQCLEAVYSSDRVSEEVVMDVEETLRTKPAVQKMFLQVLRHASRRGYA------------SSRG--PTLLHGPSFETLARFSYTLLCVCVDRVDYSVAHTLLQLTGNYFQACYVHEGGGDMFRGQPGGPGVPAAGGGVGIDGGGEGEQ---------------------------PGYFSEFLSARICRHPIFTDMRFWQHVLSEAVQAK 1926
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7848.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB83_ECTSI1.100e-4348.83WD-40 repeat protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5KB05_9PHAE3.140e-4248.39UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7848contigP-wetherbeei_contig7848:531..2778 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LB83
Preferred nameSCD1
PFAMsDENN,WD40,dDENN,uDENN
Model size1148
Max annot lvl2759|Eukaryota
KEGG koko:K03361,ko:K20164
KEGG Pathwayko04111,ko04120,map04111,map04120
KEGG ModuleM00407
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000278,GO:0000281,GO:0000819,GO:0000910,GO:0000911,GO:0001568,GO:0001570,GO:0001932,GO:0001934,GO:0001944,GO:0002682,GO:0002683,GO:0002761,GO:0002762,GO:0003674,GO:0003700,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005783,GO:0005794,GO:0005886,GO:0006275,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007154,GO:0007165,GO:0007166,GO:0007176,GO:0007219,GO:0007275,GO:0008150,GO:0008152,GO:0008156,GO:0009056,GO:0009057,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009653,GO:0009791,GO:0009825,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010235,GO:0010374,GO:0010440,GO:0010468,GO:0010469,GO:0010498,GO:0010506,GO:0010556,GO:0010558,GO:0010562,GO:0010564,GO:0010594,GO:0010604,GO:0010605,GO:0010632,GO:0010638,GO:0010646,GO:0010647,GO:0010721,GO:0010821,GO:0010822,GO:0010941,GO:0010942,GO:0010948,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016567,GO:0016740,GO:0019005,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0022402,GO:0022603,GO:0023051,GO:0023052,GO:0023056,GO:0030135,GO:0030136,GO:0030154,GO:0030162,GO:0030163,GO:0030234,GO:0030323,GO:0030324,GO:0030332,GO:0030334,GO:0030674,GO:0031146,GO:0031224,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031347,GO:0031348,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031410,GO:0031461,GO:0031625,GO:0031647,GO:0031648,GO:0031974,GO:0031981,GO:0031982,GO:0032268,GO:0032270,GO:0032386,GO:0032388,GO:0032446,GO:0032501,GO:0032502,GO:0032506,GO:0032875,GO:0032876,GO:0032879,GO:0032880,GO:0032991,GO:0033043,GO:0033157,GO:0033554,GO:0033674,GO:0034644,GO:0035239,GO:0035295,GO:0036211,GO:0040007,GO:0040012,GO:0042058,GO:0042176,GO:0042325,GO:0042327,GO:0042802,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043392,GO:0043408,GO:0043410,GO:0043412,GO:0043523,GO:0043525,GO:0043535,GO:0043549,GO:0043632,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045309,GO:0045595,GO:0045596,GO:0045637,GO:0045638,GO:0045670,GO:0045671,GO:0045732,GO:0045741,GO:0045742,GO:0045765,GO:0045786,GO:0045824,GO:0045859,GO:0045860,GO:0045862,GO:0045934,GO:0045937,GO:0048471,GO:0048513,GO:0048514,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048731,GO:0048856,GO:0048869,GO:0050730,GO:0050731,GO:0050776,GO:0050777,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050816,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051052,GO:0051053,GO:0051093,GO:0051098,GO:0051100,GO:0051101,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051219,GO:0051222,GO:0051223,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051252,GO:0051270,GO:0051276,GO:0051301,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051603,GO:0051716,GO:0051726,GO:0055106,GO:0060090,GO:0060255,GO:0060284,GO:0060341,GO:0060541,GO:0061097,GO:0061098,GO:0061136,GO:0061640,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0070372,GO:0070374,GO:0070647,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071944,GO:0072358,GO:0072359,GO:0080008,GO:0080090,GO:0080134,GO:0080135,GO:0090049,GO:0090087,GO:0090316,GO:0090329,GO:0090558,GO:0097027,GO:0097708,GO:0098772,GO:0098813,GO:0104004,GO:0140096,GO:0140110,GO:1900407,GO:1900409,GO:1901184,GO:1901186,GO:1901214,GO:1901216,GO:1901342,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1902105,GO:1902106,GO:1902175,GO:1902177,GO:1902410,GO:1902494,GO:1902531,GO:1902533,GO:1902882,GO:1902884,GO:1903010,GO:1903011,GO:1903025,GO:1903026,GO:1903047,GO:1903050,GO:1903052,GO:1903146,GO:1903201,GO:1903203,GO:1903209,GO:1903214,GO:1903223,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903376,GO:1903378,GO:1903506,GO:1903533,GO:1903670,GO:1903706,GO:1903707,GO:1903747,GO:1903749,GO:1903827,GO:1903829,GO:1903955,GO:1904951,GO:1990234,GO:1990452,GO:2000026,GO:2000058,GO:2000060,GO:2000104,GO:2000112,GO:2000113,GO:2000145,GO:2000273,GO:2000677,GO:2000678,GO:2001141,GO:2001204,GO:2001205,GO:2001233,GO:2001235,GO:2001242,GO:2001244
Exons5
Evalue2.42e-08
EggNOG OGsKOG0274@1|root,KOG2127@1|root,KOG0274@2759|Eukaryota,KOG2127@2759|Eukaryota
DescriptionRab guanyl-nucleotide exchange factor activity
Cds size378
COG categoryL
BRITEko00000,ko00001,ko00002,ko04121,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7848.1.1prot_P-wetherbeei_contig7848.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7848 912..1823 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187004.3429525-UTR-P-wetherbeei_contig7848:530..9111683187004.3429525-UTR-P-wetherbeei_contig7848:530..911Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7848 531..911 -
1683187004.3769372-UTR-P-wetherbeei_contig7848:1823..18441683187004.3769372-UTR-P-wetherbeei_contig7848:1823..1844Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7848 1824..1844 -
1683187004.3847315-UTR-P-wetherbeei_contig7848:2175..24701683187004.3847315-UTR-P-wetherbeei_contig7848:2175..2470Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7848 2176..2470 -
1683187004.3927438-UTR-P-wetherbeei_contig7848:2705..27781683187004.3927438-UTR-P-wetherbeei_contig7848:2705..2778Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7848 2706..2778 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187004.3532321-CDS-P-wetherbeei_contig7848:911..10341683187004.3532321-CDS-P-wetherbeei_contig7848:911..1034Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7848 912..1034 -
1683187004.3613057-CDS-P-wetherbeei_contig7848:1374..15681683187004.3613057-CDS-P-wetherbeei_contig7848:1374..1568Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7848 1375..1568 -
1683187004.3691607-CDS-P-wetherbeei_contig7848:1762..18231683187004.3691607-CDS-P-wetherbeei_contig7848:1762..1823Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7848 1763..1823 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7848.1.1

>prot_P-wetherbeei_contig7848.1.1 ID=prot_P-wetherbeei_contig7848.1.1|Name=mRNA_P-wetherbeei_contig7848.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=126bp
MPGGSSLVEHSGGGKPCGASGDEMHNGGAKGGGGGGGGGDKGVQQQQSQG
PRYFSEFLSARIRRHPIFADMRFWRHILLQQIEAKLATREKKAVGGGDHH
SARKRARGVVPAGAGDPHQHGVSLR*
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mRNA from alignment at P-wetherbeei_contig7848:531..2778-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7848.1.1 ID=mRNA_P-wetherbeei_contig7848.1.1|Name=mRNA_P-wetherbeei_contig7848.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2248bp|location=Sequence derived from alignment at P-wetherbeei_contig7848:531..2778- (Phaeothamnion wetherbeei SAG_119_79)
AGGAGTGGGGCCCGCCGGACAAGGACAGCGAGCAGCTGCAGCGGTGTCTA
GAGAGCGTCTTTTCGTCTGACAGGTGCGTCGTCCTTTGCTGGGCTTGAGG
TAGGGGCATAGGTTTTGGGTCTTTTGCTTGCTGCGCGTGTTGCCCATTGA
ACATTTGTGGAGGTTTCGCACTGGCCAGTGCTCGTGCCCGAAACGTCTGC
GCATACCTTGCCTCGCTTTAAAGCGCTAAGCAGAGGGCGAACGCGCTATC
GCCGGACACAACACAATTCCCTGCCGCGGCTGTGTGTCCTTCATTCAATT
TCGTGCAGGGTGCCTGAACAGCTCATCACGAGCGTGGAGCAGATCCTCCG
AACCAACCGCGCCGTCCAGCGCCGCTTTCTCGGCGTCCTCCGCCAGCCGG
CGCAGCGCCGCCACGCCCACGGGCTCCGGCGCTCCGGCGGCGGCTTTGGC
GGGAACGGGCGAGGCCACCAGCCGGTGGTGCTGCACGGCCCCAGCTTCGA
AACGCTGGCGCGGCTGAGCTACACGCTGCTGTGCGTGTGCGTGGACAGCG
AGGACTATGATACGGCGCACGTGCTGCTGCAGCTCACAGGCGCCTTCTTC
CAGGTGGGTGCGGCTGAGGAAGAGGAAAAGACGCGCAATTTTTTCTGGCT
TTACGTCTTTTTTGCGTTTTCTGTGGCGCAATTTCAGGTGAGAAAGGCAG
GAGGTCTCTTCTTACCAGTCCCTTTTTCGTTATTGTATGTTGCAGCGTTG
CCAGTTCTGTTTCGTGCTTGTGCTTGGTTTTGTTATCTTCGCCTGGCGCG
TGCTCTTAGCGCGTTCGAAAGCGGCTTTTATGTTATGCCTCTTCTTATGG
ATGAGTCAGGCACGCCATCTTCCTTTATCTCTGTGGCATCTGTTATGCTT
TCTATTTCGCCTTAAACGCTGGCGCTGACGGCAGGTTCACGAAGGCGGGA
CTTCGATGCCAGGCGGCTCCTCGCTCGTGGAGCACAGCGGCGGTGGCAAG
CCGTGCGGTGCGTCAGGTGCGACTGGGTTTGAGAGGCAGCCGCCATTTGC
GGGCATGCGATTCGGAGCGAAAAAGAACGCCCCGTCCGTCGCTCTTAGAG
TCATTCTGACAAGCTCTCGCTTCCTGCCCAACCACTGCGGCGCTCTCCTT
TTGCTTAACAACCAACCAACGCACGCCCCCGCTCCCTTTCAAACCGCGAA
TCCGGCGCAGGCGACGAGATGCACAACGGCGGCGCCAAAGGCGGCGGTGG
CGGCGGCGGCGGCGGCGACAAAGGCGTGCAGCAGCAGCAGTCGCAGGGCC
CCCGGTACTTCAGCGAGTTTTTGAGCGCGCGCATCCGGCGGCACCCCATC
TTCGCGGACATGCGCTTCTGGCGGCACATTTTGCTGCAGCAAATCGAGGC
CAAGGTGGGTTTGTGGCCGGCTTTGCTCTGAGGCTTCTCTCCTTTTTCCA
GTTTTCGTTTTCTGTCTTTTGGCTTCTGTTAGTTCTTCTTTGGGAGTGCG
ACTTTTGGGAACGTGTGGTTTCTTTAAGAGTGTGAAGAGCCGTGCTGTTG
GCCGTTTGAGCGCCTACTTTTAGTCTGAGCGGATCGCCGGACGCTGCTCC
TTCCCTCCTCCCCGCCGCGGCCATTATGTACGTACACATTCGTAGCTGTG
GTGGATCTGCAGAAGTAACGCGCTTTGGCGGCTCCTTGTCTCTCGGTTTT
CAAATGGGTTCCGTCGCCCATTTTGCCTGTTCGTTTGGACGCAGCTGGCC
ACACGGGAGAAGAAGGCGGTGGGCGGTGGGGACCACCATAGCGCACGAAA
GCGGGCGCGGGGCGTGGTGCCGGCGGGAGCCGGCGACCCGCACCAGCACG
GCGTCAGCCTCAGGTAAGCATGCTTCCCTAGGAGATGGTCTTTAGTGTGA
AGAGCTTTGAATTGGCAACCTTTCACTCAAGGGACTGAAGAATTGGCTTA
CGCTTGGGCAAGAATTCGGTGCATTTTGTCTCGCCTTTCTTTTGGGATCT
GTCTTTTTTAAGAAGCCAGGCCACATTGGCTTGTGAAAGCTCACACCTTT
GCGCATCGGTGTGCTTATATTTCCCGACCGTCGCGAGTCTCCGCGTTCGA
GCCTGTCTTTCCTTTCGTTGCTGGTTTCCTATTCCCCTGCACTGTGCGAC
GGCCGACGCGCAGCCCTGGCGGCGGCAAGGGCTCGCGCAGGCCTGGCGGC
AAGCGGCGCGTGGGCAGCGGCCTGAGCAGCGGCGGCGAGGACGGTGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7848:531..2778-

>mRNA_P-wetherbeei_contig7848.1.1 ID=mRNA_P-wetherbeei_contig7848.1.1|Name=mRNA_P-wetherbeei_contig7848.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig7848:531..2778- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCAGGCGGCTCCTCGCTCGTGGAGCACAGCGGCGGTGGCAAGCCGTG
CGGTGCGTCAGGCGACGAGATGCACAACGGCGGCGCCAAAGGCGGCGGTG
GCGGCGGCGGCGGCGGCGACAAAGGCGTGCAGCAGCAGCAGTCGCAGGGC
CCCCGGTACTTCAGCGAGTTTTTGAGCGCGCGCATCCGGCGGCACCCCAT
CTTCGCGGACATGCGCTTCTGGCGGCACATTTTGCTGCAGCAAATCGAGG
CCAAGCTGGCCACACGGGAGAAGAAGGCGGTGGGCGGTGGGGACCACCAT
AGCGCACGAAAGCGGGCGCGGGGCGTGGTGCCGGCGGGAGCCGGCGACCC
GCACCAGCACGGCGTCAGCCTCAGGTAA
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