mRNA_P-wetherbeei_contig1291.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1291.1.1
Unique NamemRNA_P-wetherbeei_contig1291.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig1291.1.1 vs. uniprot
Match: A0A7S2XWF6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWF6_9STRA)

HSP 1 Score: 117 bits (294), Expect = 5.490e-25
Identity = 86/246 (34.96%), Postives = 120/246 (48.78%), Query Frame = 1 
Query:  220 NSPASKLLRDLGLSPQDARQLDILDLLLSLPRKERTKYGKRKNLTAEERVEQTKRRNREHARSTRKRKKLIMDALQAQVDMLHGRAGMAASRAXXXXXXXXXXXXXXXAVEERPHGELDAARLACLRAFFSYCCSSAGNGGGRSDGPADMAAAVSSSDVRASSGNGCSCGGVSGEAPHSLEEWADILTEDFMLSLPALPLPQPAANGAGASGALLLSQEPRVGVGIDSLLRERAALPRTILDLVFA 957
            ++PA+K LR+L LS +DAR+LDIL LL +LPRKERTKYGKRK LT EER E TK+RNREHARSTRKRKK+IM+ALQ+QV+ L  +                        V E     + + R+A L+ FFSY                                        +    H+ ++W +++ E+   + P LP     A G  A     +       +GID+L+R+    P ++ D + A
Sbjct:   21 HNPAAKFLRELNLSIEDARRLDILALLTNLPRKERTKYGKRKALTPEERNELTKQRNREHARSTRKRKKIIMEALQSQVNELQRKL----------------EPMLECKVLETNTEHVQSVRIANLKKFFSY---------------------------------------RNTNLSHTYDDWVEVVCENIRFTSPVLPFGHKEARGPSA-----VRLNTHTYIGIDALIRDIVRFPSSMADYLDA 206
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1291.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2XWF6_9STRA5.490e-2534.96Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1291contigP-wetherbeei_contig1291:1075..3655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2276
Hectar predicted targeting categoryother localisation
Exons2
Cds size1668
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185966.0901372-UTR-P-wetherbeei_contig1291:1074..12241683185966.0901372-UTR-P-wetherbeei_contig1291:1074..1224Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1291 1075..1224 +
1683185966.1245484-UTR-P-wetherbeei_contig1291:3197..36551683185966.1245484-UTR-P-wetherbeei_contig1291:3197..3655Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1291 3198..3655 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185966.099072-CDS-P-wetherbeei_contig1291:1224..13921683185966.099072-CDS-P-wetherbeei_contig1291:1224..1392Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1291 1225..1392 +
1683185966.1079454-CDS-P-wetherbeei_contig1291:1697..31971683185966.1079454-CDS-P-wetherbeei_contig1291:1697..3197Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1291 1698..3197 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1291.1.1prot_P-wetherbeei_contig1291.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1291 1225..3197 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1291.1.1

>prot_P-wetherbeei_contig1291.1.1 ID=prot_P-wetherbeei_contig1291.1.1|Name=mRNA_P-wetherbeei_contig1291.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=556bp
MATSRQVPREIGAPDGLTAFDDENSPASKLLRDLGLSPQDARQLDILDLL
LSLPRKERTKYGKRKNLTAEERVEQTKRRNREHARSTRKRKKLIMDALQA
QVDMLHGRAGMAASRAAAAAAPARQQQQEQQAVEERPHGELDAARLACLR
AFFSYCCSSAGNGGGRSDGPADMAAAVSSSDVRASSGNGCSCGGVSGEAP
HSLEEWADILTEDFMLSLPALPLPQPAANGAGASGALLLSQEPRVGVGID
SLLRERAALPRTILDLVFAGEIDDASAAIGVGDKDMPGGGSSSNGSEASE
SDEDGSSIDGEAAAKGATARAQATAATAAPAEAAMAPAVQAAAVAAAANG
IGAALLPAALPLPRPAVFAVESCAVRFELHADGVMCVGEKAMCTWTVHVT
LASGGSCSGMDIRNVSIEGMAKCRFVPGSHRLAAADLRFDALGLCRGLEA
ATGRKIVRRALGPPGPLFAPLTPMAPPPPGVWTWAGPPPGAGAGHLAAGG
GGALPASAPPPYHPHYGYPAPPPLHHPLYSAPRGPPHGTAMLAPPRPAVG
WHTVP*
back to top

mRNA from alignment at P-wetherbeei_contig1291:1075..3655+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1291.1.1 ID=mRNA_P-wetherbeei_contig1291.1.1|Name=mRNA_P-wetherbeei_contig1291.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2581bp|location=Sequence derived from alignment at P-wetherbeei_contig1291:1075..3655+ (Phaeothamnion wetherbeei SAG_119_79)
CGTGGAAAAAAGAGGAAAGCGTGATGAGATCCATTTTTTTGCACGGAACA
CGAGTTGTCACGAACCGTCGTTCATCACTGGCCGATTGCACAGCTGTCTC
CAGACCTCTTTCGTCGTTTGGGGCCGTCTGTCGTTCCCCACTATAGCGTG
ATGGCAACATCTCGCCAGGTTCCGCGCGAAATCGGCGCTCCAGATGGACT
AACAGCGTTCGATGACGAGAACTCTCCTGCGTCAAAGCTGCTGCGAGACC
TCGGGCTGTCTCCACAGGACGCTCGACAGCTCGACATCCTCGACCTTCTG
CTCTCGCTTCCTCGAAAGGTGAATATCAGCGACCGGTGCGATCACGCATT
ATTTTCCCGCCTATTTGAGGCCTTGCAATCACAGAGCCGCGAGGTGCTGC
GCCGGCGGAGATTTTCCGTTGCGAAACCGTGCTCCTGTCATGACTGAGAG
TGGACGGTTTTACACCCCTTCTCCTGAGTCAAGTGCCGGTTTACAGGCTC
TTGGCAGGTGCCGAAACAGATGTGAGGTGCAGCAATGCCTTGTCCGCCAT
TTCCCGAGCCACTTCCGAAGCTAAAATCGCGAAGGAATTGGATCGATTTC
TCCGTACCAACCTTTTCCCCCAGGAACGCACCAAGTACGGGAAGCGAAAG
AACCTTACCGCGGAAGAGCGCGTGGAGCAGACGAAGCGCCGCAACCGCGA
GCACGCTCGCAGCACGCGCAAGCGCAAGAAGCTCATAATGGATGCGCTCC
AGGCGCAAGTGGACATGCTGCATGGCCGGGCAGGCATGGCGGCTTCTCGG
GCGGCGGCGGCCGCGGCGCCGGCGCGGCAGCAGCAGCAAGAACAGCAGGC
CGTAGAGGAGCGTCCGCACGGCGAGCTCGATGCGGCACGGCTGGCCTGCC
TGCGCGCATTTTTTTCCTACTGCTGTTCCAGTGCCGGCAACGGCGGCGGA
AGGAGCGACGGACCGGCGGACATGGCCGCCGCCGTCTCTTCTTCTGACGT
CCGCGCCTCCAGTGGAAACGGCTGCAGTTGTGGCGGCGTTAGCGGCGAGG
CGCCGCATTCGCTCGAGGAGTGGGCGGACATCCTGACGGAAGACTTTATG
CTCAGCTTGCCGGCCCTGCCTCTTCCGCAGCCCGCCGCAAACGGCGCTGG
CGCCAGCGGCGCGCTGCTGCTGAGCCAGGAGCCGCGCGTCGGTGTCGGGA
TCGATTCGCTGCTGCGCGAGAGGGCCGCTCTGCCCCGGACGATTCTGGAC
TTAGTCTTTGCCGGGGAGATTGACGACGCATCAGCGGCCATCGGCGTCGG
CGACAAGGATATGCCGGGCGGCGGCAGCAGCAGCAACGGCAGCGAGGCCA
GTGAGAGCGACGAAGACGGCAGCAGCATCGACGGCGAGGCTGCAGCAAAG
GGGGCCACGGCAAGAGCGCAAGCAACAGCAGCCACGGCAGCGCCCGCAGA
GGCGGCGATGGCGCCTGCTGTCCAGGCGGCGGCCGTCGCGGCGGCGGCGA
ACGGGATCGGAGCCGCGTTGTTGCCAGCGGCGCTGCCGCTGCCGCGGCCG
GCCGTCTTTGCGGTGGAGTCGTGCGCTGTCCGGTTTGAGCTGCACGCGGA
CGGCGTCATGTGCGTCGGCGAGAAGGCCATGTGCACCTGGACGGTGCACG
TGACGCTGGCGTCCGGCGGCAGCTGTAGCGGGATGGACATCCGGAATGTG
TCCATCGAGGGAATGGCCAAGTGCCGGTTCGTGCCCGGCAGCCACCGGCT
GGCGGCCGCCGACCTGCGCTTCGACGCCCTGGGCCTATGCCGGGGGCTCG
AGGCCGCCACGGGCCGCAAGATCGTCCGGCGGGCGCTCGGGCCACCCGGG
CCGTTGTTTGCGCCCTTGACGCCTATGGCGCCGCCGCCGCCCGGAGTGTG
GACCTGGGCGGGGCCGCCGCCCGGCGCGGGAGCCGGCCATCTCGCCGCGG
GTGGCGGCGGCGCGTTGCCGGCGTCCGCGCCGCCGCCGTACCACCCGCAT
TATGGCTACCCAGCGCCGCCGCCCCTCCACCACCCACTCTACAGCGCGCC
TCGCGGGCCACCGCACGGCACGGCGATGCTCGCTCCGCCGCGTCCGGCGG
TAGGGTGGCACACCGTGCCGTAAAGGGGAGATAGATTGGCTCTTGGGCCA
GAGATAGCGATTAGACATCCTTTAATTCTTAGCAAGTTCTCTTGACGCTG
GGCACTGGTTGGCAAGGCGCGCTCTAAAAAGCGCTGCCCTAGGAGGCCAA
AAGTCTTCGTTTTGAAGGTTAGCAGGGCGGCGCAGCACCCTGCAACCACT
TTTTTGGCGTCGTCGTTTCGATTGGAATACGATAGAGGAGCATGTAACGC
AGCGTCGTGCACCGCTCGGTTCTGCCAGGCAGTGGCAGCGAGCGGGAAGG
GGCGGCGGCGGACGGAATGGAAGAGGGCGCAGCGCTGGCAGAAGCTGCTC
ACGAATTATAAATCTTAGGACCCGGCGAAGCGGTGCATGCTGATGAAAAT
AGACAAGCGATCCAGCCTCGAAGGGGAGTATTTGGGTCGTATTCCAGTGC
CTCTATACTAATTAGAATCCTTATTGCCGCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1291:1075..3655+

>mRNA_P-wetherbeei_contig1291.1.1 ID=mRNA_P-wetherbeei_contig1291.1.1|Name=mRNA_P-wetherbeei_contig1291.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1668bp|location=Sequence derived from alignment at P-wetherbeei_contig1291:1075..3655+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAACATCTCGCCAGGTTCCGCGCGAAATCGGCGCTCCAGATGGACT
AACAGCGTTCGATGACGAGAACTCTCCTGCGTCAAAGCTGCTGCGAGACC
TCGGGCTGTCTCCACAGGACGCTCGACAGCTCGACATCCTCGACCTTCTG
CTCTCGCTTCCTCGAAAGGAACGCACCAAGTACGGGAAGCGAAAGAACCT
TACCGCGGAAGAGCGCGTGGAGCAGACGAAGCGCCGCAACCGCGAGCACG
CTCGCAGCACGCGCAAGCGCAAGAAGCTCATAATGGATGCGCTCCAGGCG
CAAGTGGACATGCTGCATGGCCGGGCAGGCATGGCGGCTTCTCGGGCGGC
GGCGGCCGCGGCGCCGGCGCGGCAGCAGCAGCAAGAACAGCAGGCCGTAG
AGGAGCGTCCGCACGGCGAGCTCGATGCGGCACGGCTGGCCTGCCTGCGC
GCATTTTTTTCCTACTGCTGTTCCAGTGCCGGCAACGGCGGCGGAAGGAG
CGACGGACCGGCGGACATGGCCGCCGCCGTCTCTTCTTCTGACGTCCGCG
CCTCCAGTGGAAACGGCTGCAGTTGTGGCGGCGTTAGCGGCGAGGCGCCG
CATTCGCTCGAGGAGTGGGCGGACATCCTGACGGAAGACTTTATGCTCAG
CTTGCCGGCCCTGCCTCTTCCGCAGCCCGCCGCAAACGGCGCTGGCGCCA
GCGGCGCGCTGCTGCTGAGCCAGGAGCCGCGCGTCGGTGTCGGGATCGAT
TCGCTGCTGCGCGAGAGGGCCGCTCTGCCCCGGACGATTCTGGACTTAGT
CTTTGCCGGGGAGATTGACGACGCATCAGCGGCCATCGGCGTCGGCGACA
AGGATATGCCGGGCGGCGGCAGCAGCAGCAACGGCAGCGAGGCCAGTGAG
AGCGACGAAGACGGCAGCAGCATCGACGGCGAGGCTGCAGCAAAGGGGGC
CACGGCAAGAGCGCAAGCAACAGCAGCCACGGCAGCGCCCGCAGAGGCGG
CGATGGCGCCTGCTGTCCAGGCGGCGGCCGTCGCGGCGGCGGCGAACGGG
ATCGGAGCCGCGTTGTTGCCAGCGGCGCTGCCGCTGCCGCGGCCGGCCGT
CTTTGCGGTGGAGTCGTGCGCTGTCCGGTTTGAGCTGCACGCGGACGGCG
TCATGTGCGTCGGCGAGAAGGCCATGTGCACCTGGACGGTGCACGTGACG
CTGGCGTCCGGCGGCAGCTGTAGCGGGATGGACATCCGGAATGTGTCCAT
CGAGGGAATGGCCAAGTGCCGGTTCGTGCCCGGCAGCCACCGGCTGGCGG
CCGCCGACCTGCGCTTCGACGCCCTGGGCCTATGCCGGGGGCTCGAGGCC
GCCACGGGCCGCAAGATCGTCCGGCGGGCGCTCGGGCCACCCGGGCCGTT
GTTTGCGCCCTTGACGCCTATGGCGCCGCCGCCGCCCGGAGTGTGGACCT
GGGCGGGGCCGCCGCCCGGCGCGGGAGCCGGCCATCTCGCCGCGGGTGGC
GGCGGCGCGTTGCCGGCGTCCGCGCCGCCGCCGTACCACCCGCATTATGG
CTACCCAGCGCCGCCGCCCCTCCACCACCCACTCTACAGCGCGCCTCGCG
GGCCACCGCACGGCACGGCGATGCTCGCTCCGCCGCGTCCGGCGGTAGGG
TGGCACACCGTGCCGTAA
back to top