mRNA_P-wetherbeei_contig7830.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7830.2.1
Unique NamemRNA_P-wetherbeei_contig7830.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig7830.2.1 vs. uniprot
Match: A0A4C1VV94_EUMVA (Histone deacetylase complex subunit SAP18 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1VV94_EUMVA)

HSP 1 Score: 101 bits (252), Expect = 1.890e-25
Identity = 51/91 (56.04%), Postives = 59/91 (64.84%), Query Frame = 1 
Query:    1 CPLLLRCFCREGGHNSADDYAPGAEQLPKNELDIYTWMDATLRELTTLIQDVNPSARRAGARLSFALVYPTKQVRVPRSAISSVWCIGGRA 273
            CPLLLR FC  G HNS  DYA G   +P+NEL IYTWMDATLRELT+L+++VNP  RR G    FA+VYP  +    R     V C G RA
Sbjct:   25 CPLLLRVFCSTGRHNSPADYARG--NVPQNELQIYTWMDATLRELTSLVKEVNPETRRKGTYFDFAIVYPDMRSPTYRMREIGVTCSGQRA 113
[Close]
BLAST of mRNA_P-wetherbeei_contig7830.2.1 vs. uniprot
Match: A0A210Q1W2_MIZYE (Histone deacetylase complex subunit SAP18 n=2 Tax=Pectinidae TaxID=6566 RepID=A0A210Q1W2_MIZYE)

HSP 1 Score: 100 bits (248), Expect = 7.010e-25
Identity = 49/92 (53.26%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:    1 CPLLLRCFCREGGHNSADDYAPGAEQLPKNELDIYTWMDATLRELTTLIQDVNPSARRAGARLSFALVYPTKQVRVPRSAISSVWCIGGRAQ 276
            CPLLLR FC  G HN+  ++A G  Q P NEL IYTWMDATL+ELT+L+++VNP ARR G    FA+VYP  +  V R       C G R Q
Sbjct:   25 CPLLLRVFCSTGRHNTLSEFARG--QTPSNELQIYTWMDATLKELTSLVKEVNPDARRKGTFFDFAVVYPDPRTPVYRMREIGTTCAGHRGQ 114
[Close]
BLAST of mRNA_P-wetherbeei_contig7830.2.1 vs. uniprot
Match: A0A6J1MID2_BICAN (Histone deacetylase complex subunit SAP18 n=37 Tax=Ditrysia TaxID=37567 RepID=A0A6J1MID2_BICAN)

HSP 1 Score: 99.8 bits (247), Expect = 1.200e-24
Identity = 50/90 (55.56%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:    1 CPLLLRCFCREGGHNSADDYAPGAEQLPKNELDIYTWMDATLRELTTLIQDVNPSARRAGARLSFALVYPTKQVRVPRSAISSVWCIGGR 270
            CPLLLR FC  G HNS  DYA G   +P+NEL IYTWMDATLRELT L+++VNP  RR G    FA+VYP  +    R     V C G R
Sbjct:   27 CPLLLRVFCATGRHNSTGDYARG--NVPQNELQIYTWMDATLRELTGLVKEVNPETRRKGTYFDFAIVYPDMRSPTYRMREIGVTCSGQR 114
[Close]
BLAST of mRNA_P-wetherbeei_contig7830.2.1 vs. uniprot
Match: UPI0005D09822 (histone deacetylase complex subunit SAP18 n=1 Tax=Plutella xylostella TaxID=51655 RepID=UPI0005D09822)

HSP 1 Score: 99.0 bits (245), Expect = 2.460e-24
Identity = 49/90 (54.44%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:    1 CPLLLRCFCREGGHNSADDYAPGAEQLPKNELDIYTWMDATLRELTTLIQDVNPSARRAGARLSFALVYPTKQVRVPRSAISSVWCIGGR 270
            CPLLLR FC  G HNS  DY  G+  +P+NEL IYTWMDATLRELT+L+++VNP  RR G    FA+VYP  +    R     V C G R
Sbjct:   28 CPLLLRVFCSTGRHNSPGDYVRGS--VPQNELQIYTWMDATLRELTSLVKEVNPETRRKGTYFDFAIVYPDTRSPTYRLREIGVTCSGQR 115
[Close]
BLAST of mRNA_P-wetherbeei_contig7830.2.1 vs. uniprot
Match: A0A803KZ12_CHEQI (Uncharacterized protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803KZ12_CHEQI)

HSP 1 Score: 97.4 bits (241), Expect = 7.020e-24
Identity = 48/90 (53.33%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:    1 CPLLLRCFCREGGHNSADDYAPGAEQLPKNELDIYTWMDATLRELTTLIQDVNPSARRAGARLSFALVYPTKQVRVPRSAISSVWCIGGR 270
            CP LLR F + G H+S +D+A G  QLPKNE  IYTW DATL+ELT L+++V P+ARR  ARLSFA V+P KQ  V    +   +  G R
Sbjct:   35 CPFLLRVFTKVGSHHSREDFA-GRGQLPKNEFQIYTWKDATLQELTDLVKEVTPAARRKDARLSFAFVFPGKQGHVVVRPVGKTFSYGNR 123
[Close]
BLAST of mRNA_P-wetherbeei_contig7830.2.1 vs. uniprot
Match: Q7PR28_ANOGA (Histone deacetylase complex subunit SAP18 n=20 Tax=Anopheles TaxID=7164 RepID=Q7PR28_ANOGA)

HSP 1 Score: 96.7 bits (239), Expect = 1.490e-23
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:    1 CPLLLRCFCREGGHNSADDYAPGAEQLPKNELDIYTWMDATLRELTTLIQDVNPSARRAGARLSFALVYPTK 216
            CPLLLR FC  G H+S ++Y+ G   +P NEL IYTWMDATLRELTTL++DVNP  RR G    FA+VYP +
Sbjct:   25 CPLLLRVFCSTGRHHSTNEYSYG--NVPSNELQIYTWMDATLRELTTLVRDVNPETRRKGTYFDFAIVYPER 94
[Close]
BLAST of mRNA_P-wetherbeei_contig7830.2.1 vs. uniprot
Match: Q16GI2_AEDAE (Histone deacetylase complex subunit SAP18 n=1 Tax=Aedes aegypti TaxID=7159 RepID=Q16GI2_AEDAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.570e-23
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:    1 CPLLLRCFCREGGHNSADDYAPGAEQLPKNELDIYTWMDATLRELTTLIQDVNPSARRAGARLSFALVYPTK 216
            CPLLLR FC  G H+S+++Y  G   +P NEL IYTWMDATLRELTTL++DVNP  RR G    FA+VYP +
Sbjct:   13 CPLLLRVFCSTGRHHSSNEYNHG--NVPSNELQIYTWMDATLRELTTLVRDVNPETRRKGTYFDFAIVYPDR 82
[Close]
BLAST of mRNA_P-wetherbeei_contig7830.2.1 vs. uniprot
Match: A0A067H4R8_CITSI (Uncharacterized protein n=5 Tax=Citrus TaxID=2706 RepID=A0A067H4R8_CITSI)

HSP 1 Score: 96.3 bits (238), Expect = 2.530e-23
Identity = 48/93 (51.61%), Postives = 63/93 (67.74%), Query Frame = 1 
Query:    1 CPLLLRCFCREGGHNSADDYAPGAEQLPKNELDIYTWMDATLRELTTLIQDVNPSARRAGARLSFALVYPTKQVRVPRSAISSVWCIGGRAQM 279
            CPLLLR F + GGH+S +D+A   ++ PK+E+ IYTW DATLRELT L+++V P+ARR  ARLSFA VYP K  R     +   +   GR Q+
Sbjct:   43 CPLLLRVFTKIGGHHSREDFAVRGKE-PKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQL 134
[Close]
BLAST of mRNA_P-wetherbeei_contig7830.2.1 vs. uniprot
Match: A0A1B0C9K6_LUTLO (Histone deacetylase complex subunit SAP18 n=2 Tax=Phlebotominae TaxID=7198 RepID=A0A1B0C9K6_LUTLO)

HSP 1 Score: 95.5 bits (236), Expect = 3.410e-23
Identity = 45/70 (64.29%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:    1 CPLLLRCFCREGGHNSADDYAPGAEQLPKNELDIYTWMDATLRELTTLIQDVNPSARRAGARLSFALVYP 210
            CPLLLR FC  G H+S  +YA G   +P NEL IYTW DATLRELTTL++DVNP  RR G    FALVYP
Sbjct:   25 CPLLLRVFCSTGRHHSTAEYAHG--NVPSNELQIYTWQDATLRELTTLVRDVNPETRRKGTYFDFALVYP 92
[Close]
BLAST of mRNA_P-wetherbeei_contig7830.2.1 vs. uniprot
Match: A0A0K8TSH3_TABBR (Histone deacetylase complex subunit SAP18 n=1 Tax=Tabanus bromius TaxID=304241 RepID=A0A0K8TSH3_TABBR)

HSP 1 Score: 95.5 bits (236), Expect = 4.450e-23
Identity = 47/88 (53.41%), Postives = 56/88 (63.64%), Query Frame = 1 
Query:    1 CPLLLRCFCREGGHNSADDYAPGAEQLPKNELDIYTWMDATLRELTTLIQDVNPSARRAGARLSFALVYPTKQVRVPRSAISSVWCIG 264
            CPLLLR FC  G H+S  +YA G   +P NEL IYTW DATLRELT+L++DVNP  R+ G    FALV+P  +  V R     V C G
Sbjct:   25 CPLLLRVFCSTGRHHSLSEYAHG--NVPTNELQIYTWQDATLRELTSLVRDVNPETRKKGTYFDFALVFPEPRTPVYRMREIGVTCSG 110
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7830.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4C1VV94_EUMVA1.890e-2556.04Histone deacetylase complex subunit SAP18 n=1 Tax=... [more]
A0A210Q1W2_MIZYE7.010e-2553.26Histone deacetylase complex subunit SAP18 n=2 Tax=... [more]
A0A6J1MID2_BICAN1.200e-2455.56Histone deacetylase complex subunit SAP18 n=37 Tax... [more]
UPI0005D098222.460e-2454.44histone deacetylase complex subunit SAP18 n=1 Tax=... [more]
A0A803KZ12_CHEQI7.020e-2453.33Uncharacterized protein n=1 Tax=Chenopodium quinoa... [more]
Q7PR28_ANOGA1.490e-2361.11Histone deacetylase complex subunit SAP18 n=20 Tax... [more]
Q16GI2_AEDAE1.570e-2361.11Histone deacetylase complex subunit SAP18 n=1 Tax=... [more]
A0A067H4R8_CITSI2.530e-2351.61Uncharacterized protein n=5 Tax=Citrus TaxID=2706 ... [more]
A0A1B0C9K6_LUTLO3.410e-2364.29Histone deacetylase complex subunit SAP18 n=2 Tax=... [more]
A0A0K8TSH3_TABBR4.450e-2353.41Histone deacetylase complex subunit SAP18 n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7830contigP-wetherbeei_contig7830:1426..2004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog13037.EHJ77871
Preferred nameSAP18
PFAMsSAP18
Model size285
Max annot lvl33208|Metazoa
KEGG koko:K14324
KEGG Pathwayko03013,ko03015,map03013,map03015
KEGG ModuleM00430
Hectar predicted targeting categoryother localisation
GOsGO:0000118,GO:0000228,GO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0000785,GO:0000790,GO:0003674,GO:0003712,GO:0003714,GO:0003824,GO:0004407,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006464,GO:0006476,GO:0006725,GO:0006807,GO:0006996,GO:0008134,GO:0008150,GO:0008152,GO:0008380,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010941,GO:0010942,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016569,GO:0016570,GO:0016575,GO:0016580,GO:0016604,GO:0016607,GO:0016787,GO:0016810,GO:0016811,GO:0019213,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032991,GO:0033119,GO:0033558,GO:0034641,GO:0035601,GO:0036211,GO:0040029,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043484,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048024,GO:0048025,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050684,GO:0050686,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0061574,GO:0065007,GO:0070013,GO:0070822,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0098732,GO:0140096,GO:0140110,GO:1901360,GO:1901564,GO:1902494,GO:1902679,GO:1903311,GO:1903312,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Exons2
Evalue2.63e-25
EggNOG OGsKOG3391@1|root,KOG3391@2759|Eukaryota,38EFX@33154|Opisthokonta,3BDYF@33208|Metazoa,3D1AX@33213|Bilateria,41ZAD@6656|Arthropoda,3SMSC@50557|Insecta,445KX@7088|Lepidoptera
Ec32 ortholog descriptionSin3 associated polypeptide p18
Ec32 orthologEc-05_005520.1
DescriptionSin3 associated polypeptide p18 (SAP18)
Cds size285
COG categoryK
BRITEko00000,ko00001,ko00002,ko03019,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187003.4499757-CDS-P-wetherbeei_contig7830:1425..15751683187003.4499757-CDS-P-wetherbeei_contig7830:1425..1575Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7830 1426..1575 +
1683187003.4625516-CDS-P-wetherbeei_contig7830:1869..20041683187003.4625516-CDS-P-wetherbeei_contig7830:1869..2004Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7830 1870..2004 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7830.2.1prot_P-wetherbeei_contig7830.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7830 1426..2004 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7830.2.1

>prot_P-wetherbeei_contig7830.2.1 ID=prot_P-wetherbeei_contig7830.2.1|Name=mRNA_P-wetherbeei_contig7830.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=95bp
CPLLLRCFCREGGHNSADDYAPGAEQLPKNELDIYTWMDATLRELTTLIQ
DVNPSARRAGARLSFALVYPTKQVRVPRSAISSVWCIGGRAQMF*
back to top

mRNA from alignment at P-wetherbeei_contig7830:1426..2004+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7830.2.1 ID=mRNA_P-wetherbeei_contig7830.2.1|Name=mRNA_P-wetherbeei_contig7830.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=579bp|location=Sequence derived from alignment at P-wetherbeei_contig7830:1426..2004+ (Phaeothamnion wetherbeei SAG_119_79)
TGTCCGCTGCTGCTGAGATGCTTCTGCCGAGAAGGAGGCCACAACTCCGC
CGATGATTATGCACCCGGCGCCGAGCAACTGCCGAAAAACGAGCTTGATA
TCTACACCTGGATGGACGCGACGCTCCGCGAGCTCACCACGCTCATTCAG
GTGCGCCAAGGCTGCTGACGTCATTGTTAGAGATGTTGTTGTTCTCATGT
TTTTTGTCGAATCACTATTTAATCGTTTCCGGAAAGTTTGGGGCAGGGTA
TATCCACCCCTCATCGTCTGGCATATGCGTTCTCCTTGGGCATGGCTTCG
AGAATGCTTTCGTTCTGAGATATGTGTGCTTCATTCGGAAGAGGGATATA
AAACAGGCGGCATTGGGTTCTTCCCCTCTCCACATTGAGCATGATTTCAT
TTCCTACCTGTGCCAAAATCACTGAACCTCTCGCTCCTCGCCAGGATGTG
AACCCCTCGGCGCGACGAGCAGGCGCGCGGCTCAGTTTTGCGCTGGTCTA
CCCAACAAAGCAGGTGCGAGTGCCGCGTAGCGCGATTTCATCTGTCTGGT
GCATTGGTGGGAGAGCGCAAATGTTCTAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig7830:1426..2004+

>mRNA_P-wetherbeei_contig7830.2.1 ID=mRNA_P-wetherbeei_contig7830.2.1|Name=mRNA_P-wetherbeei_contig7830.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig7830:1426..2004+ (Phaeothamnion wetherbeei SAG_119_79)
TGTCCGCTGCTGCTGAGATGCTTCTGCCGAGAAGGAGGCCACAACTCCGC
CGATGATTATGCACCCGGCGCCGAGCAACTGCCGAAAAACGAGCTTGATA
TCTACACCTGGATGGACGCGACGCTCCGCGAGCTCACCACGCTCATTCAG
GATGTGAACCCCTCGGCGCGACGAGCAGGCGCGCGGCTCAGTTTTGCGCT
GGTCTACCCAACAAAGCAGGTGCGAGTGCCGCGTAGCGCGATTTCATCTG
TCTGGTGCATTGGTGGGAGAGCGCAAATGTTCTAA
back to top