mRNA_P-wetherbeei_contig7830.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7830.1.1
Unique NamemRNA_P-wetherbeei_contig7830.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7830.1.1 vs. uniprot
Match: D7FLK5_ECTSI (Alpha-galactosidase N-terminal, family GH36 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLK5_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 1.060e-60
Identity = 93/140 (66.43%), Postives = 113/140 (80.71%), Query Frame = 1
Query:    1 GAAFISLRAAPDKSPTRTWRLGVPRATKLLALHRFKLWWMKPLHARRTSDIPPETQLLLTELPPDDATGRRLFALFVPLIDGPVKCSLKGLGDQHLQLMAETGCAGTAVPSNDLAGLFVAVHDDPFALVEKSFRLVNNRL 420
            GAAFISLRAA D +PTRTW +G P AT ++AL RFKLWWM P H  + ++IPPETQ++LT+LPPD  TGR+L+ LF+PLIDG  KC+LKGL D+ LQL AETGC  T VPS+D+AGL+V V +DPF LVEKSF+LVN RL
Sbjct:  197 GAAFISLRAANDGAPTRTWNVGRPNATSMMALARFKLWWMMPKHTTKANEIPPETQMMLTKLPPDPETGRQLYGLFIPLIDGQAKCNLKGLPDRSLQLFAETGCPNTPVPSSDVAGLYVGVDEDPFKLVEKSFKLVNARL 336          
BLAST of mRNA_P-wetherbeei_contig7830.1.1 vs. uniprot
Match: A0A6H5JFU4_9PHAE (Galactinol--sucrose galactosyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU4_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 1.600e-57
Identity = 92/140 (65.71%), Postives = 113/140 (80.71%), Query Frame = 1
Query:    1 GAAFISLRAAPDKSPTRTWRLGVPRATKLLALHRFKLWWMKPLHARRTSDIPPETQLLLTELPPDDATGRRLFALFVPLIDGPVKCSLKGLGDQHLQLMAETGCAGTAVPSNDLAGLFVAVHDDPFALVEKSFRLVNNRL 420
            GAAFISLRA  D++PTRTW +G P AT ++AL RFKLWWM P H  + ++IPPETQ++LT+LPPD  TGR+L+ LF+PLIDG  KC+LKGL D+ LQL AETGC  T VPS+D+AGL+V V +DPF LVEKSF+LVN RL
Sbjct:  167 GAAFISLRAGNDRAPTRTWNVGRPNATSMMALARFKLWWMMPKHTTKANEIPPETQMMLTKLPPDPETGRQLYGLFIPLIDGQAKCNLKGLPDRSLQLFAETGCPDTPVPSSDVAGLYVGVDEDPFKLVEKSFKLVNTRL 306          
BLAST of mRNA_P-wetherbeei_contig7830.1.1 vs. uniprot
Match: A0A835YGP5_9STRA (Galactinol--sucrose galactosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGP5_9STRA)

HSP 1 Score: 157 bits (397), Expect = 7.760e-42
Identity = 79/163 (48.47%), Postives = 97/163 (59.51%), Query Frame = 1
Query:   64 GVPRATKLLALHRFKLWWMKPLHARRTSDIPPETQLLLTELPPDDATGRRLFALFVPLIDGPVKCS--------------------------------------------LKGLGDQHLQLMAETGCAGTAVPSNDLAGLFVAVHDDPFALVEKSFRLVNNRL 420
            G   A  ++ LH+FKLWWMKP H RR SD+PPETQLLL+E+PPD  TGRRL++LF+PL+DGP KC                                             +KGL DQHLQL+AETGC+ T VPS+D  GLFVAVHDDP+ L+ KSF+LV  R+
Sbjct:  176 GGSNAALVVTLHKFKLWWMKPTHGRRGSDVPPETQLLLSEMPPDPETGRRLYSLFIPLLDGPAKCXXXXXXXXXXXXXRYVGIIAQDNDIEGRCLXXXXXXXXXXXXXXXMKGLPDQHLQLLAETGCSKTPVPSSDFVGLFVAVHDDPYELLAKSFKLVQKRM 338          
BLAST of mRNA_P-wetherbeei_contig7830.1.1 vs. uniprot
Match: A0A835Z7Z4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Z4_9STRA)

HSP 1 Score: 116 bits (290), Expect = 4.390e-30
Identity = 57/104 (54.81%), Postives = 72/104 (69.23%), Query Frame = 1
Query:   85 LLALHRFKLWWMKPLHARRTSDIPPETQLLLTELPPDDATGRRLFALFVPLIDGPVKCSLKGLGDQHLQLMAETGCAGTAVPSNDLAGLFVAVHDDPFALVEKS 396
            ++AL RFKLWWM+P H    S +PPETQLLL E P     G  L+ +F+PL+DG VKCSLKG  DQ L ++AETGC GT VP+  +  L++AV  DPF L+E S
Sbjct:    1 MVALSRFKLWWMRPSHIAHPSAVPPETQLLLGETPEALPDGGTLYTVFIPLLDGVVKCSLKGAADQTLHVVAETGCPGTPVPAY-VHALYIAVGADPFVLLEAS 103          
BLAST of mRNA_P-wetherbeei_contig7830.1.1 vs. uniprot
Match: A0A7I8KFN5_SPIIN (Galactinol--sucrose galactosyltransferase n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8KFN5_SPIIN)

HSP 1 Score: 87.4 bits (215), Expect = 2.390e-17
Identity = 50/145 (34.48%), Postives = 78/145 (53.79%), Query Frame = 1
Query:    4 AAFISLRAAPDKSPTR-TWRLGVPRATKLLALHRFKLWWMKPLHARRTSDIPPETQLLLTELPPDD---------ATGRRLFALFVPLIDGPVKCSLKGLGDQHLQLMAETGCAGTAVPSNDLAGLFVAVHDDPFALVEKSFRLV 408
            AAF+   ++P +S  R  + LG     +LL L RFK+WWM P   R +SDIPPETQ+LL E+  D          ++    + L +P++DG  + SL+G  D  LQ   E+G  G  + S     +F+   D+P+ L+  S +++
Sbjct:   40 AAFVGAASSPGESKARHVFTLGRLLGFRLLCLFRFKIWWMIPRVGRSSSDIPPETQMLLLEVSEDSTLEDEAVDSSSDDTFYILVLPVLDGDFRASLQGNSDNELQFCVESGDPGVQI-SRVSQAVFINFGDNPYELLTDSIKIL 183          
BLAST of mRNA_P-wetherbeei_contig7830.1.1 vs. uniprot
Match: U5D974_AMBTC (Galactinol--sucrose galactosyltransferase (Fragment) n=2 Tax=Amborella trichopoda TaxID=13333 RepID=U5D974_AMBTC)

HSP 1 Score: 85.9 bits (211), Expect = 8.350e-17
Identity = 44/120 (36.67%), Postives = 62/120 (51.67%), Query Frame = 1
Query:   61 LGVPRATKLLALHRFKLWWMKPLHARRTSDIPPETQLLLTELPPDDATGRRLFALFVPLIDGPVKCSLKGLGDQHLQLMAETGCAGTAVPSNDLAGLFVAVHDDPFALVEKSFRLVNNRL 420
            LG  R  + L+  RFKLWWM         D+P ETQ +L E    + +   ++A+F+PL++GP + SL+G     L L  E+G      PS+    LFV    DPFA +  +FR V   L
Sbjct:  103 LGTLREVRFLSCFRFKLWWMAQKMGTCGGDVPQETQFMLVETAQSEDSNEPIYAVFLPLLEGPFRASLQGNERDELALCIESGDPAVKTPSSLTHTLFVTAGSDPFATIADAFRAVKQHL 222          
BLAST of mRNA_P-wetherbeei_contig7830.1.1 vs. uniprot
Match: A0A7C4QFT5_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C4QFT5_9CHLR)

HSP 1 Score: 84.3 bits (207), Expect = 2.820e-16
Identity = 55/131 (41.98%), Postives = 76/131 (58.02%), Query Frame = 1
Query:    7 AFISLRAAPDKSPTRTWRLG-VPRATKLLALHRFKLWWMKPLHARRTSDIPPETQLLLTELPPDDATGRRLFALFVPLIDGPVKCSLKGLGDQHLQLMAETGCAGTAVPSNDLAGLFVAVHDDPFALVEKS 396
            AF+ L AA    P     LG +   T+  A HR++ +WM P    R  ++PPETQ+LL EL    A G    ALFVPLID   +  L+G G+  L ++ E+G A  AV ++ +  LFVAV DDP+ALV ++
Sbjct:   26 AFVRL-AAEKPGPRHVLPLGDLAGITRFTACHRYEPFWMTPRAGTRGGEVPPETQVLLAEL----AGGG--CALFVPLIDAAFRACLQGAGEHGLAVVLESGDA--AVAADAMTALFVAVADDPYALVPRA 147          
BLAST of mRNA_P-wetherbeei_contig7830.1.1 vs. uniprot
Match: UPI0019BD9FA7 (Uncharacterized protein n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=UPI0019BD9FA7)

HSP 1 Score: 82.4 bits (202), Expect = 1.350e-15
Identity = 51/114 (44.74%), Postives = 66/114 (57.89%), Query Frame = 1
Query:   79 TKLLALHRFKLWWMKPLHARRTSDIPPETQLLLTELPPDDATGRRLFALFVPLIDGPVKCSLKGLGDQHLQLMAETGCAGTAVPSNDLAGLFVAVHDDPFALVEKSFRLVNNRL 420
            T+ +A HR++ +WM      R   +P ETQ LL EL      GR  FALFVPLID  ++CSL+G G   LQL+AETG    A       GLFVAV DDP++L+  +   V+  L
Sbjct:  121 TRFVAQHRYEPFWMTVATGERLGAVPVETQFLLAELD----NGR--FALFVPLIDFLLRCSLQGDGADGLQLVAETG--DPAARQESATGLFVAVGDDPYSLISGAAMAVSKYL 226          
BLAST of mRNA_P-wetherbeei_contig7830.1.1 vs. uniprot
Match: UPI0019CD9B6F (Uncharacterized protein n=1 Tax=Fibrella sp. TaxID=1871320 RepID=UPI0019CD9B6F)

HSP 1 Score: 76.6 bits (187), Expect = 1.380e-13
Identity = 46/118 (38.98%), Postives = 67/118 (56.78%), Query Frame = 1
Query:   67 VPRATKLLALHRFKLWWMKPLHARRTSDIPPETQLLLTELPPDDATGRRLFALFVPLIDGPVKCSLKGLGDQHLQLMAETGCAGTAVPSNDLAGLFVAVHDDPFALVEKSFRLVNNRL 420
            VP   + +A HR++ +WM          IP ETQ LL EL           A+FVPLIDG ++ SL+G G+  LQL+AE+G    A    +L G+FVAV ++P+ L+ ++ R V + L
Sbjct:   43 VPDLVRYVAHHRYEPFWMTAATGTSAGTIPVETQFLLAELTDGQV------AVFVPLIDGTLRASLQGDGENGLQLIAESG--DPAARQAELTGIFVAVGEEPYDLLARAARSVADHL 152          
BLAST of mRNA_P-wetherbeei_contig7830.1.1 vs. uniprot
Match: A0A832HHW3_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A832HHW3_9BACT)

HSP 1 Score: 76.6 bits (187), Expect = 1.390e-13
Identity = 43/112 (38.39%), Postives = 67/112 (59.82%), Query Frame = 1
Query:   61 LGVPRATKLLALHRFKLWWMKPLHARRTSDIPPETQLLLTELPPDDATGRRLFALFVPLIDGPVKCSLKGLGDQHLQLMAETGCAGTAVPSNDLAGLFVAVHDDPFALVEKS 396
            LG P+ T+  A +R + WWMKP   +  +D+P ETQ+L  E+    A G+   ALFVP+IDG ++C+L G     L L+ ++     AV ++ + GLF+A+ DD   LV ++
Sbjct:   54 LGTPQITRWAACYRDEPWWMKPRVGKAVADVPAETQVLYGEV----ADGK--VALFVPIIDGAMRCALIGAAGNKLSLVVDSD--DPAVVADRVIGLFIAIGDDIHTLVREA 157          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7830.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7FLK5_ECTSI1.060e-6066.43Alpha-galactosidase N-terminal, family GH36 n=1 Ta... [more]
A0A6H5JFU4_9PHAE1.600e-5765.71Galactinol--sucrose galactosyltransferase n=1 Tax=... [more]
A0A835YGP5_9STRA7.760e-4248.47Galactinol--sucrose galactosyltransferase n=1 Tax=... [more]
A0A835Z7Z4_9STRA4.390e-3054.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7I8KFN5_SPIIN2.390e-1734.48Galactinol--sucrose galactosyltransferase n=2 Tax=... [more]
U5D974_AMBTC8.350e-1736.67Galactinol--sucrose galactosyltransferase (Fragmen... [more]
A0A7C4QFT5_9CHLR2.820e-1641.98Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
UPI0019BD9FA71.350e-1544.74Uncharacterized protein n=1 Tax=Armatimonadetes ba... [more]
UPI0019CD9B6F1.380e-1338.98Uncharacterized protein n=1 Tax=Fibrella sp. TaxID... [more]
A0A832HHW3_9BACT1.390e-1338.39Uncharacterized protein n=1 Tax=Phycisphaerae bact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7830contigP-wetherbeei_contig7830:254..673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3649.evm.model.supercontig_27.196
PFAMsRaffinose_syn
Model size420
Max annot lvl35493|Streptophyta
KEGG rclassRC00049,RC00059
KEGG koko:K06617
KEGG ReactionR02411
KEGG Pathwayko00052,map00052
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.96e-18
EggNOG OGs2CC3R@1|root,2QQDV@2759|Eukaryota,37T96@33090|Viridiplantae,3GDWP@35493|Streptophyta,3HVS9@3699|Brassicales
EC2.4.1.82
DescriptionRaffinose synthase or seed imbibition protein Sip1
Cds size420
COG categoryS
CAZyGH36
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187003.4197135-CDS-P-wetherbeei_contig7830:253..6731683187003.4197135-CDS-P-wetherbeei_contig7830:253..673Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7830 254..673 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7830.1.1prot_P-wetherbeei_contig7830.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7830 254..673 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7830.1.1

>prot_P-wetherbeei_contig7830.1.1 ID=prot_P-wetherbeei_contig7830.1.1|Name=mRNA_P-wetherbeei_contig7830.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=140bp
GAAFISLRAAPDKSPTRTWRLGVPRATKLLALHRFKLWWMKPLHARRTSD
IPPETQLLLTELPPDDATGRRLFALFVPLIDGPVKCSLKGLGDQHLQLMA
ETGCAGTAVPSNDLAGLFVAVHDDPFALVEKSFRLVNNRL
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mRNA from alignment at P-wetherbeei_contig7830:254..673-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7830.1.1 ID=mRNA_P-wetherbeei_contig7830.1.1|Name=mRNA_P-wetherbeei_contig7830.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig7830:254..673- (Phaeothamnion wetherbeei SAG_119_79)
GGCGCGGCCTTCATCTCGCTGCGGGCAGCCCCTGACAAGTCCCCCACCCG GACGTGGCGCCTGGGTGTGCCGCGTGCCACCAAGCTGCTGGCGCTCCACC GCTTCAAGCTCTGGTGGATGAAGCCGCTGCACGCTCGCCGCACGTCGGAC ATCCCGCCCGAGACCCAGCTGCTGCTTACGGAGCTGCCGCCTGACGATGC GACGGGCCGCCGCCTCTTCGCCCTCTTCGTGCCGCTCATCGACGGCCCCG TCAAGTGTTCCCTCAAAGGTCTCGGCGATCAGCACCTGCAACTCATGGCG GAGACGGGCTGCGCCGGCACGGCCGTCCCCTCCAACGATCTCGCCGGACT CTTTGTCGCCGTGCACGACGACCCCTTCGCTCTGGTCGAGAAGTCGTTTC GGCTGGTCAACAACCGGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7830:254..673-

>mRNA_P-wetherbeei_contig7830.1.1 ID=mRNA_P-wetherbeei_contig7830.1.1|Name=mRNA_P-wetherbeei_contig7830.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig7830:254..673- (Phaeothamnion wetherbeei SAG_119_79)
GGCGCGGCCTTCATCTCGCTGCGGGCAGCCCCTGACAAGTCCCCCACCCG
GACGTGGCGCCTGGGTGTGCCGCGTGCCACCAAGCTGCTGGCGCTCCACC
GCTTCAAGCTCTGGTGGATGAAGCCGCTGCACGCTCGCCGCACGTCGGAC
ATCCCGCCCGAGACCCAGCTGCTGCTTACGGAGCTGCCGCCTGACGATGC
GACGGGCCGCCGCCTCTTCGCCCTCTTCGTGCCGCTCATCGACGGCCCCG
TCAAGTGTTCCCTCAAAGGTCTCGGCGATCAGCACCTGCAACTCATGGCG
GAGACGGGCTGCGCCGGCACGGCCGTCCCCTCCAACGATCTCGCCGGACT
CTTTGTCGCCGTGCACGACGACCCCTTCGCTCTGGTCGAGAAGTCGTTTC
GGCTGGTCAACAACCGGCTG
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