mRNA_P-wetherbeei_contig783.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig783.1.1
Unique NamemRNA_P-wetherbeei_contig783.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig783.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig783contigP-wetherbeei_contig783:1454..2362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog90675.XP_010431467.1
PFAMsDBD_Tnp_Mut,MULE,SWIM
Model size632
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000387
EggNOG OGs29CIJ@1|root,2RJNC@2759|Eukaryota,37THD@33090|Viridiplantae,3GEBB@35493|Streptophyta,3HYCN@3699|Brassicales
DescriptionMULE transposase domain
Cds size276
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187003.3674066-CDS-P-wetherbeei_contig783:1453..16691683187003.3674066-CDS-P-wetherbeei_contig783:1453..1669Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig783 1454..1669 -
1683187003.3789954-CDS-P-wetherbeei_contig783:1947..20071683187003.3789954-CDS-P-wetherbeei_contig783:1947..2007Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig783 1948..2007 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187003.3917358-UTR-P-wetherbeei_contig783:2007..23621683187003.3917358-UTR-P-wetherbeei_contig783:2007..2362Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig783 2008..2362 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig783.1.1prot_P-wetherbeei_contig783.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig783 1454..2007 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig783.1.1

>prot_P-wetherbeei_contig783.1.1 ID=prot_P-wetherbeei_contig783.1.1|Name=mRNA_P-wetherbeei_contig783.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=92bp
MALGEDDSYQLMEPFLKAFEEKHPGSVTSLEKDEEGRFKRCCIVPHACAV
AACRTPKQLLMMDGFFQKGSWNGTGLVFTVGSANGELSVVCL
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mRNA from alignment at P-wetherbeei_contig783:1454..2362-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig783.1.1 ID=mRNA_P-wetherbeei_contig783.1.1|Name=mRNA_P-wetherbeei_contig783.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=909bp|location=Sequence derived from alignment at P-wetherbeei_contig783:1454..2362- (Phaeothamnion wetherbeei SAG_119_79)
ATTTGCTCGCTGGAAGGCGTGGGCTGACCTCAATCTCTTCGGCTGGGCGG
CAGAAGAAGTACGGGTGTACAGGGTACAACACCAAGGACAGAACTGGCTG
CTCTTTTCGTGCATATGCAACGAAGCAGGCCAATGGGGAGTGGAAAATAT
CCGCCCAAAGTAGTAGACGAGCACGAGAACTGCGCCGCTGTCCCGAAGGC
GAGTTCAGCGGCGATCGCGGTGATGCTGGAGTCGCAGGTGCGCGCCAACA
AGAGCATGAAGTCCACGCAGCTCCAGGCATCGCTCAAGGCAGCCGGGTTT
GAGGCCAAGCGGCGCCAGCCGCGTCAACAACGCGAAACTGCGCGTGAAGA
AGGAGATGGCCCTGGGCGAGGATGACTCATACCAGCTCATGGAGCCGTTC
TTGAAGGCATTCGAGGTTAGTTGACATTCATTTTATCTCTTTGCACTGGA
GAAAGACGCCTCCTATGCTCTTTCTGTTTTCACGAGTGGAGTATTTCAAG
CACTGCTGCGACTCCGCATCGTTATTACTGTCGAGGTAGTGTCTTATCGT
ATTTACCCTTCCCTGCTATTGCTAACTCGTTTCAGTTTTTCGAAGTTTTG
AATATTTGAATTTGTGCGTCCGATTCTCATATTAACTGGGCTTTCTTTTG
CGGACTTTGCCGCCGCTAATGCCATTCCCTCCGCATTCATCAGGAGAAGC
ACCCGGGAAGCGTTACCTCGCTGGAGAAGGACGAGGAGGGACGCTTCAAG
CGGTGCTGCATCGTGCCGCATGCCTGTGCTGTCGCCGCCTGCAGGACGCC
AAAGCAGCTCCTGATGATGGACGGTTTCTTCCAAAAGGGGTCGTGGAACG
GGACGGGACTCGTGTTCACCGTCGGCTCGGCAAACGGCGAGCTTTCCGTG
GTCTGCCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig783:1454..2362-

>mRNA_P-wetherbeei_contig783.1.1 ID=mRNA_P-wetherbeei_contig783.1.1|Name=mRNA_P-wetherbeei_contig783.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig783:1454..2362- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCCTGGGCGAGGATGACTCATACCAGCTCATGGAGCCGTTCTTGAA
GGCATTCGAGGAGAAGCACCCGGGAAGCGTTACCTCGCTGGAGAAGGACG
AGGAGGGACGCTTCAAGCGGTGCTGCATCGTGCCGCATGCCTGTGCTGTC
GCCGCCTGCAGGACGCCAAAGCAGCTCCTGATGATGGACGGTTTCTTCCA
AAAGGGGTCGTGGAACGGGACGGGACTCGTGTTCACCGTCGGCTCGGCAA
ACGGCGAGCTTTCCGTGGTCTGCCTG
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