mRNA_P-wetherbeei_contig783.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig783.4.1
Unique NamemRNA_P-wetherbeei_contig783.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig783.4.1 vs. uniprot
Match: D7FKC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKC6_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 2.190e-25
Identity = 67/131 (51.15%), Postives = 87/131 (66.41%), Query Frame = 2
Query:   23 GVPTAGQLKARFLGAVQPECRRAALVPESAP-GLFGQLFGSVLAAMTVPPKGMVEGDTADDILARAADLVERDDFRSAVTELEKLKGLAAVTAKDWMEDARNRMRADMVAKSLAAHTALLNAALLDVQ*GR 412
            G+PT  QLK RF G V+ ECRRAALVPE A  G+ G L  S LA +T  PKGMVEGD A+ +LARA  L+E  + +SAV EL+KL GL A  A DW++DA+ R+ AD   + +  H ++LNA  L+   G+
Sbjct:  481 GIPTVSQLKQRF-GIVKAECRRAALVPEQAGNGMMGHLVASALAKITFAPKGMVEGDEAEGVLARADYLLEAGELQSAVGELDKLHGLPADVAMDWLKDAKTRLTADEALRVIRCHASILNAEHLEALDGK 610          
BLAST of mRNA_P-wetherbeei_contig783.4.1 vs. uniprot
Match: A0A6H5L3V0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3V0_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.820e-24
Identity = 69/131 (52.67%), Postives = 86/131 (65.65%), Query Frame = 2
Query:    5 AAAREGGVPTAGQLKAR---FLGAVQPECRRAALVPESAP-GLFGQLFGSVLAAMTVPPKGMVEGDTADDILARAADLVERDDFRSAVTELEKLKGLAAVTAKDWMEDARNRMRADMVAKSLAAHTALLNA 385
            AAAR  G+PT  QLK R     G V+ ECRRAALVP+ A  G+ G L  S LA +T  PKGMVEGD A+ +LARA  L+E  + +SAV ELEKL GL A  A DW++DA+ R+ AD   + +  H A+LNA
Sbjct:  712 AAAR--GIPTVSQLKQRHAILFGIVKAECRRAALVPQQAGNGMMGHLVASALAKITFAPKGMVEGDEAEAVLARADHLLEAGELQSAVGELEKLHGLPADVAMDWLKDAKTRLTADEALRVIRCHAAILNA 840          
BLAST of mRNA_P-wetherbeei_contig783.4.1 vs. uniprot
Match: W7TLX9_9STRA (Mitochondrial inner membrane protein Mitofilin n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TLX9_9STRA)

HSP 1 Score: 111 bits (278), Expect = 6.350e-24
Identity = 61/124 (49.19%), Postives = 83/124 (66.94%), Query Frame = 2
Query:   23 GVPTAGQLKARFLGAVQPECRRAALVPESAPGLFGQLFGSVLAAMTVPPKGMVEGDTADDILARAADLVERDDFRSAVTELEKLKGLAAVTAKDWMEDARNRMRADMVAKSLAAHTALLNAALL 394
            GVPT  +L+ RF   VQ   R AA VPES+PG+ G +F  +LAA+T+ P+G+VEG  AD+ LARAA  VER     AV ELE L GLA  T +DW++DAR R+     A+++ A +ALLN +++
Sbjct:  361 GVPTPSELQVRFP-MVQKAAREAAFVPESSPGMVGHMFAGLLAAVTIQPRGLVEGSGADETLARAAYHVERGHLAEAVQELEGLGGLAGRTVEDWLQDARGRLELTQAARAMNARSALLNVSMV 483          
BLAST of mRNA_P-wetherbeei_contig783.4.1 vs. uniprot
Match: K8ZAZ5_NANGC (Mitochondrion protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8ZAZ5_NANGC)

HSP 1 Score: 107 bits (268), Expect = 2.760e-22
Identity = 60/124 (48.39%), Postives = 82/124 (66.13%), Query Frame = 2
Query:   23 GVPTAGQLKARFLGAVQPECRRAALVPESAPGLFGQLFGSVLAAMTVPPKGMVEGDTADDILARAADLVERDDFRSAVTELEKLKGLAAVTAKDWMEDARNRMRADMVAKSLAAHTALLNAALL 394
            GV T  +L+ RF   VQ   R AA VPES+PG+ G +F  +LAA+T+ P+G+VEG  AD+ LARAA  VER     AV ELE L GLA  T +DW++DAR R+     A+++ A +ALLN +++
Sbjct:  564 GVLTPSELQVRFP-MVQKAAREAAFVPESSPGMVGHMFAGLLAAVTIQPRGLVEGSGADETLARAAYHVERGHLAEAVQELEGLGGLAGRTVEDWLQDARGRLELTQAARAMNARSALLNVSMV 686          
BLAST of mRNA_P-wetherbeei_contig783.4.1 vs. uniprot
Match: A0A835YW45_9STRA (Mitochondrial inner membrane protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW45_9STRA)

HSP 1 Score: 106 bits (265), Expect = 6.740e-22
Identity = 61/113 (53.98%), Postives = 80/113 (70.80%), Query Frame = 2
Query:   23 GVPTAGQLKARFLGAVQPECRRAALVPES-APGLFGQLFGSVLAAMTVPPKGMVEGDTADDILARAADLVERDDFRSAVTELEKLKGLAAVTAKDWMEDARNRMRADMVAKSL 358
            GVPTA QL+ RF   V+ E  RAALVP     G+ GQ  G++L+  T+P  GMVEG +ADD+LARA  L++  D RSAV EL +L+GLAAVTA+DW++DA  R+RAD   ++L
Sbjct:  544 GVPTAEQLRRRFA-RVRGEAARAALVPGGDGAGVMGQAVGALLSVFTLPRHGMVEGSSADDVLARAECLLDGGDLRSAVKELSRLEGLAAVTARDWVQDAEARLRADDAMRAL 655          
BLAST of mRNA_P-wetherbeei_contig783.4.1 vs. uniprot
Match: A0A5D6XY43_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XY43_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.740e-16
Identity = 52/123 (42.28%), Postives = 74/123 (60.16%), Query Frame = 2
Query:   17 EGGVPTAGQLKARFLGAVQPECRRAALVPESAPGLFGQLFGSVLAAMTVPPKGMVEGDTADDILARAADLVERDDFRSAVTELEKLKGLAAVTAKDWMEDARNRMRADMVAKSLAAHTALLNA 385
            + G P+  QL+ RF+  V+    RAAL P  A GL GQLFGS L+ + +PP G +EGD  D + +RA   ++  D  SA+ EL+ L G+ A  A+DW+  A +R+  +  AK + AH ALL A
Sbjct:  576 DAGAPSVSQLQERFV-VVKKVAHRAALAPADA-GLVGQLFGSALSLLMIPPGGPIEGDDTDAVFSRADYALKAGDIESALGELKALSGVPAQVAQDWVAAAESRLAVEQTAKVVKAHVALLAA 696          
BLAST of mRNA_P-wetherbeei_contig783.4.1 vs. uniprot
Match: A0A7S2H172_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H172_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.810e-12
Identity = 54/136 (39.71%), Postives = 71/136 (52.21%), Query Frame = 2
Query:   23 GVPTAGQLKARFLGAVQPECRRAALVPESAPGLFGQLFGSVLAAMT--------VPPKGMVEG--------DTADDILARAADLVERDDFRSAVTELEKLKGLAAVTAKDWMEDARNRMRADMVAKSLAAHTALLN 382
            GVPT  +L+A+F   V   CR AALVP+   GL GQL G + A +T        +PP              D AD ILA+A   V+  D   A+ EL+KLKG AA T KDW +DA +R+  +   K +    AL+N
Sbjct:  333 GVPTLSELQAKF-DKVHSVCREAALVPKGRIGLEGQLLGILFAKLTFPASPDAPIPPSTDTTAVDASPSTKDNADYILAKAQKHVQLGDLECALDELDKLKGQAAFTVKDWKKDALDRISVEKALKVIKMECALMN 467          
BLAST of mRNA_P-wetherbeei_contig783.4.1 vs. uniprot
Match: A0A286GTQ0_9PROT (Uroporphyrinogen-III synthase n=1 Tax=Caenispirillum bisanense TaxID=414052 RepID=A0A286GTQ0_9PROT)

HSP 1 Score: 66.2 bits (160), Expect = 2.390e-8
Identity = 54/140 (38.57%), Postives = 73/140 (52.14%), Query Frame = 2
Query:   17 EGGVPTAGQLKARFLGAVQPECRRAALVPESAPGLFGQLFGSVLAAMTVP-PKGMVEGDTADDILARAADLVERDDFRSAVTELEKLKGLAAVTAKDWMEDARNRMRADMVAKSLAAHTALLNAALLDVQ*GRHCGEAAG 433
            + G+PT   L+ RF G +  E  RAA  P+ AP         ++  +TV    G   GD A  ++ARAA  +E  D  +AV EL+KL+G AAV A DW+  A  R+ AD   K+LA  T+   A     Q G   G+AAG
Sbjct:  583 DAGIPTRDMLQERF-GRLGTEIIRAAAAPDDAPEWVQSTVKRLMGLVTVRRTDGEAVGDGASAVVARAASALEAGDLATAVAELKKLQGDAAVVADDWLAGAEARLAAD---KALADLTSESLARFAAAQRG---GDAAG 715          
BLAST of mRNA_P-wetherbeei_contig783.4.1 vs. uniprot
Match: A0A0M0K327_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K327_9EUKA)

HSP 1 Score: 60.5 bits (145), Expect = 1.380e-6
Identity = 44/123 (35.77%), Postives = 62/123 (50.41%), Query Frame = 2
Query:   26 VPTAGQLKARFLGAVQPECRRAALVPESAPGLFGQLFGSVLAAMTVPPKGMVEGDT-ADDILARAADLVERDDFRSAVTELEKLKGLAAVTAKDWMEDARNRMRADMVAKSLAAHTALLNAAL 391
            VPT  QL ARF+  V    R AALVPE+APGL+G    S+ + +T+  +    G T A  +L  A   + R D R AV  +  L G +   A  W+E A  R+  + +     A + +  AAL
Sbjct:  307 VPTVPQLTARFVD-VAAAGRTAALVPETAPGLWGHALASITSFITL--RAAETGHTHASTVLTTAETALARGDLRRAVEAVRALHGPSRAAASGWLEAAEERLLLEQILTVATAESTIATAAL 426          
BLAST of mRNA_P-wetherbeei_contig783.4.1 vs. uniprot
Match: A0A545TRI0_9PROT (Uncharacterized protein n=1 Tax=Denitrobaculum tricleocarpae TaxID=2591009 RepID=A0A545TRI0_9PROT)

HSP 1 Score: 58.2 bits (139), Expect = 9.980e-6
Identity = 46/133 (34.59%), Postives = 60/133 (45.11%), Query Frame = 2
Query:   50 ARFLGAVQPECRRAALVPESAPGL---FGQLFGSVLAA--------------------MTVPPKGMVEGDTADDILARAADLVERDDFRSAVTELEKLKGLAAVTAKDWMEDARNRMRADMVAKSLAAHTALL 379
            A    A+ P   RAA    + PGL   F Q+ GSV+AA                    +T+ P G+VEGD A  +LARA   +E  D   AV EL+ L G AA  A  W ++A  R+ A      LA   A +
Sbjct:  536 AELKAALAPLSERAASGVAALPGLRVSFDQMAGSVVAAARGGEEDDWIAKTVRKVSEAVTIRPVGLVEGDDAGAVLARAEVKLEAGDLAGAVAELDALSGSAAEGAAAWRQEAEARLEAQKALSLLATRAATM 668          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig783.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FKC6_ECTSI2.190e-2551.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3V0_9PHAE1.820e-2452.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TLX9_9STRA6.350e-2449.19Mitochondrial inner membrane protein Mitofilin n=1... [more]
K8ZAZ5_NANGC2.760e-2248.39Mitochondrion protein n=2 Tax=Monodopsidaceae TaxI... [more]
A0A835YW45_9STRA6.740e-2253.98Mitochondrial inner membrane protein-domain-contai... [more]
A0A5D6XY43_9STRA2.740e-1642.28Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S2H172_9STRA2.810e-1239.71Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A286GTQ0_9PROT2.390e-838.57Uroporphyrinogen-III synthase n=1 Tax=Caenispirill... [more]
A0A0M0K327_9EUKA1.380e-635.77Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
A0A545TRI0_9PROT9.980e-634.59Uncharacterized protein n=1 Tax=Denitrobaculum tri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig783contigP-wetherbeei_contig783:5912..7154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size961
Hectar predicted targeting categoryother localisation
Exons2
Cds size579
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187003.311453-CDS-P-wetherbeei_contig783:5911..61491683187003.311453-CDS-P-wetherbeei_contig783:5911..6149Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig783 5912..6149 +
1683187003.3220677-CDS-P-wetherbeei_contig783:6432..67731683187003.3220677-CDS-P-wetherbeei_contig783:6432..6773Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig783 6433..6773 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187003.3324594-UTR-P-wetherbeei_contig783:6773..71541683187003.3324594-UTR-P-wetherbeei_contig783:6773..7154Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig783 6774..7154 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig783.4.1prot_P-wetherbeei_contig783.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig783 5912..6773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig783.4.1

>prot_P-wetherbeei_contig783.4.1 ID=prot_P-wetherbeei_contig783.4.1|Name=mRNA_P-wetherbeei_contig783.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=193bp
GGSGARGWRADGRPTQGAVPGRGAARVPAGGAGARVRAGAVWAAVWERAG
GDDGATQGHGGGRHGRRHPRASSRPCRARRLPLRRDGAGEAQGAGGGDGE
RLDGGRPEPHAGRHGCQVARRTHCAPQRRPARRPMRPALWRSGGAGAASV
ANMAAAVTVATAVAWPASVPVVTVAAAAVAAVTAVADAVFGP*
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mRNA from alignment at P-wetherbeei_contig783:5912..7154+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig783.4.1 ID=mRNA_P-wetherbeei_contig783.4.1|Name=mRNA_P-wetherbeei_contig783.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1243bp|location=Sequence derived from alignment at P-wetherbeei_contig783:5912..7154+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCAGCGGCGCGCGAGGGTGGCGTGCCGACGGCCGGCCAACTCAAGG CGCGGTTCCTGGGCGCGGTGCAGCCCGAGTGCCGGCGGGCGGCGCTGGTG CCCGAGTCCGCGCCGGGGCTGTTTGGGCAGCTGTTTGGGAGCGTGCTGGC GGCGATGACGGTGCCACCCAAGGGCATGGTGGAGGGCGACACGGCCGACG ACATCCTCGCGCGAGCAGCCGACCTTGTCGAGCGAGACGTACGTTACGCA TGTCTCTTTGCCGTTAGTCGCAGGAAGGCTTAGTTTTTTCTCATTTTCAC AGGAACTGAAGTTCCTTCCTCTTGTAGTGCCGATGATTAAATCTTCTTGT GCATTACTTTCTTTCCGAGTGTCTTCTGAACGTCTGTCCAGATGACCTCT TTTGGTCACGCAGTGTACAGTATTGCTGACCCCTCTGCCGTCTGCTCTTT TTTGGGCGACGCCTTCGCTTGCCGCCGCCGCCCCCCGCCATCCAAAACCC TTTTTCCCATCTCATCCACAGGACTTCCGCTCCGCCGTGACGGAGCTGGA GAAGCTCAAGGGGCTGGCGGCGGTGACGGCGAAAGATTGGATGGAGGACG CCCGGAACCGCATGCGGGCCGACATGGTTGCCAAGTCGCTCGCCGCACAC ACTGCGCTCCTCAACGCCGCCCTGCTCGACGTCCAATGAGGCCGGCATTG TGGAGAAGCGGCGGGGCAGGAGCGGCGTCGGTGGCCAATATGGCGGCAGC CGTGACAGTGGCAACTGCAGTTGCATGGCCGGCGTCTGTGCCGGTGGTGA CGGTGGCGGCAGCGGCGGTGGCAGCCGTGACCGCGGTGGCAGATGCCGTT TTCGGTCCGTGAAGGAAGGGCGCTCGCTGATTGATGCGGCGGGCGGCTGT GGCGCCCGCTGCGACACGCTGAGGCTGAGATAAATGGGATTCGTGCAACA GGGGAGACTGACTGCCGGGAGGGTTGTTGGAAAGTTGAGGCGCGACAGGT TGTGGTGGGTAGCGGCTGACGGCCGCGCTTACCACGCGTAGCGCGTCATG CCAGGTTTTGAACGAAAGGGCGAAGGCTCACCATAGGGTAAAGGCGTTGC CGGCTTCTGATGGCAAATCTTGTCGCTTCCATGCAGAATCCCTTTCGTGT GGCATGGAAGGAGTTCCAGCTTCTAGACCTTTTTAATGGGGCATTTTTGC ATGTGTTTTCTTAGATCGGTTTCAGACGACTCCTGATCAGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig783:5912..7154+

>mRNA_P-wetherbeei_contig783.4.1 ID=mRNA_P-wetherbeei_contig783.4.1|Name=mRNA_P-wetherbeei_contig783.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=579bp|location=Sequence derived from alignment at P-wetherbeei_contig783:5912..7154+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCAGCGGCGCGCGAGGGTGGCGTGCCGACGGCCGGCCAACTCAAGG
CGCGGTTCCTGGGCGCGGTGCAGCCCGAGTGCCGGCGGGCGGCGCTGGTG
CCCGAGTCCGCGCCGGGGCTGTTTGGGCAGCTGTTTGGGAGCGTGCTGGC
GGCGATGACGGTGCCACCCAAGGGCATGGTGGAGGGCGACACGGCCGACG
ACATCCTCGCGCGAGCAGCCGACCTTGTCGAGCGAGACGACTTCCGCTCC
GCCGTGACGGAGCTGGAGAAGCTCAAGGGGCTGGCGGCGGTGACGGCGAA
AGATTGGATGGAGGACGCCCGGAACCGCATGCGGGCCGACATGGTTGCCA
AGTCGCTCGCCGCACACACTGCGCTCCTCAACGCCGCCCTGCTCGACGTC
CAATGAGGCCGGCATTGTGGAGAAGCGGCGGGGCAGGAGCGGCGTCGGTG
GCCAATATGGCGGCAGCCGTGACAGTGGCAACTGCAGTTGCATGGCCGGC
GTCTGTGCCGGTGGTGACGGTGGCGGCAGCGGCGGTGGCAGCCGTGACCG
CGGTGGCAGATGCCGTTTTCGGTCCGTGA
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