mRNA_P-wetherbeei_contig7824.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7824.2.1
Unique NamemRNA_P-wetherbeei_contig7824.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7824.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7824contigP-wetherbeei_contig7824:1197..1855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size659
Hectar predicted targeting categoryother localisation
Exons1
Cds size393
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187002.9765186-CDS-P-wetherbeei_contig7824:1196..15891683187002.9765186-CDS-P-wetherbeei_contig7824:1196..1589Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7824 1197..1589 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187002.987456-UTR-P-wetherbeei_contig7824:1589..18551683187002.987456-UTR-P-wetherbeei_contig7824:1589..1855Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7824 1590..1855 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7824.2.1prot_P-wetherbeei_contig7824.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7824 1197..1589 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7824.2.1

>prot_P-wetherbeei_contig7824.2.1 ID=prot_P-wetherbeei_contig7824.2.1|Name=mRNA_P-wetherbeei_contig7824.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=131bp
MECIGNDGIESAAPRNVGSPVSWRCLRKACPRQSQSILFANVKKDAARRG
LPGATVSHQRRRGAKERQRRWVLVHEKKRVDTGATLGRNGENMRLLDWCE
CRRTDIQAEVAGARAVHSLPWDGGKKNHKSC
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mRNA from alignment at P-wetherbeei_contig7824:1197..1855-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7824.2.1 ID=mRNA_P-wetherbeei_contig7824.2.1|Name=mRNA_P-wetherbeei_contig7824.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=659bp|location=Sequence derived from alignment at P-wetherbeei_contig7824:1197..1855- (Phaeothamnion wetherbeei SAG_119_79)
TCCGTATGACGGTGCTAGCGGCGGCGTCGCCCACGGCGCTTTGTGACATT
CAATGGTGGCATCGGCGTCGTGGCGATGCGGCAATGGTAGCGACTTCGGC
AGCAGCAGCGGCGATTGGGGTGGGGGCGGCAGTTGCGCCGACACATTTGA
CGACAATATCGACGGCGGTTGTGCCGCGTTGACTCCAGAGCAGGTGCCGA
GTATCTGATATACCGTTCCAAAGACTGGTCAGTGGCATCGGCGATTGCAA
CCACGTACGCGTGGTGATGGAATGCATCGGCAATGACGGCATCGAATCGG
CGGCGCCGCGAAACGTGGGCAGCCCCGTCAGTTGGAGGTGCCTTCGAAAG
GCGTGTCCGCGGCAGAGCCAGTCGATTTTGTTCGCCAATGTTAAGAAAGA
TGCGGCTAGGCGGGGCCTGCCAGGGGCCACCGTCAGCCACCAGCGTCGGA
GAGGGGCGAAGGAGCGCCAACGTAGGTGGGTTTTGGTCCACGAGAAGAAA
CGAGTCGATACAGGAGCAACTTTGGGGCGAAATGGAGAAAATATGAGACT
GTTGGACTGGTGTGAGTGCCGGCGCACAGACATACAGGCAGAGGTAGCGG
GCGCACGCGCGGTGCACTCCCTTCCGTGGGATGGTGGCAAGAAAAATCAT
AAGTCATGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7824:1197..1855-

>mRNA_P-wetherbeei_contig7824.2.1 ID=mRNA_P-wetherbeei_contig7824.2.1|Name=mRNA_P-wetherbeei_contig7824.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=393bp|location=Sequence derived from alignment at P-wetherbeei_contig7824:1197..1855- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAATGCATCGGCAATGACGGCATCGAATCGGCGGCGCCGCGAAACGT
GGGCAGCCCCGTCAGTTGGAGGTGCCTTCGAAAGGCGTGTCCGCGGCAGA
GCCAGTCGATTTTGTTCGCCAATGTTAAGAAAGATGCGGCTAGGCGGGGC
CTGCCAGGGGCCACCGTCAGCCACCAGCGTCGGAGAGGGGCGAAGGAGCG
CCAACGTAGGTGGGTTTTGGTCCACGAGAAGAAACGAGTCGATACAGGAG
CAACTTTGGGGCGAAATGGAGAAAATATGAGACTGTTGGACTGGTGTGAG
TGCCGGCGCACAGACATACAGGCAGAGGTAGCGGGCGCACGCGCGGTGCA
CTCCCTTCCGTGGGATGGTGGCAAGAAAAATCATAAGTCATGT
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