mRNA_P-wetherbeei_contig7821.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7821.2.1
Unique NamemRNA_P-wetherbeei_contig7821.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7821.2.1 vs. uniprot
Match: A0A7N0UD61_KALFE (Protein FAR1-RELATED SEQUENCE n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0UD61_KALFE)

HSP 1 Score: 57.0 bits (136), Expect = 7.850e-5
Identity = 39/141 (27.66%), Postives = 60/141 (42.55%), Query Frame = 1 
Query:   13 PVTIITDNDAAAAAGIRAEFPGTKHFLCVWHFMMNVNEHASAAWGXXXXXXXXXXXXGDGTEESTNKTEFLRLFKKAMYST-SEAAFDSRWATLMGWAPLTSKPKLLAYLKRLHADRHRWAFFPRSRFLTLGMTASQRVES 432
            P+TI+TD  AA AAGI+  FP +KH LC+WH + N  E   +                        K  F+ LF   +    SEA F+  W  ++        P ++ + K     + +W       F + G+ +SQR E+
Sbjct:  383 PITIMTDESAAMAAGIKKVFPTSKHRLCIWHIIKNSKERIISL---------------------RKKDGFIHLFNHLLKGCDSEAEFNFYWQRMITVYNCADNPLIIKFYK----TKEKWCGAFCKDFFSGGILSSQRSET 498
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7821.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7N0UD61_KALFE7.850e-527.66Protein FAR1-RELATED SEQUENCE n=1 Tax=Kalanchoe fe... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7821contigP-wetherbeei_contig7821:26..1853 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4432.XP_010271481.1
PFAMsFAR1,MULE,SWIM
Model size1600
Max annot lvl35493|Streptophyta
KEGG koko:K17604
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.69e-10
EggNOG OGs28P7B@1|root,2QVUC@2759|Eukaryota,37T6G@33090|Viridiplantae,3GXAJ@35493|Streptophyta
DescriptionProtein FAR1-RELATED SEQUENCE 5-like
Cds size1599
COG categoryS
BRITEko00000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187002.9378703-CDS-P-wetherbeei_contig7821:25..3191683187002.9378703-CDS-P-wetherbeei_contig7821:25..319Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7821 26..319 +
1683187002.9475598-CDS-P-wetherbeei_contig7821:547..18521683187002.9475598-CDS-P-wetherbeei_contig7821:547..1852Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7821 548..1852 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7821.2.1prot_P-wetherbeei_contig7821.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7821 26..1852 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7821.2.1

>prot_P-wetherbeei_contig7821.2.1 ID=prot_P-wetherbeei_contig7821.2.1|Name=mRNA_P-wetherbeei_contig7821.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=533bp
KAIEPVTIITDNDAAAAAGIRAEFPGTKHFLCVWHFMMNVNEHASAAWGG
GGGRKGKKKDDGDGTEESTNKTEFLRLFKKAMYSTSEAAFDSRWATLMGW
APLTSKPKLLAYLKRLHADRHRWAFFPRSRFLTLGMTASQRVESYFNRLK
IYLRNSGRKKGLLHIAQHIHDVCIDEQLVAAGEGDTATGIRSRVQLDSLC
VDFFDKDVLTPIRKRFPTYLCDKVRLEIVKCGFFAVQLHDARQGGGWLGP
GETAGAVAAAAQPVEDDDALAADPDSAELGDDRPRLDPAAMAQAFADKAG
YDVVCRVTPHRQAGSSPKSLDIVCCNTRTGTHVCSCTMILRYGYPCRHFW
ACYLNRQSTGVTFSVDRSILPRWRAVLSEEQHEAAAGGGAASGAEPEDQP
TPAAAAAAAAAAPAAAAPHDNGFAAAESDPFDCSFAGPLFDGFAAYDGLT
AGAAVVAEPGFDAVGPAAAAAAVEVDAPVGGRGVAAAAIMGVVFAEGGVP
PPPAQHRLEPVAMQPVLQSQAAARQAFIRQQDR
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mRNA from alignment at P-wetherbeei_contig7821:26..1853+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7821.2.1 ID=mRNA_P-wetherbeei_contig7821.2.1|Name=mRNA_P-wetherbeei_contig7821.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1828bp|location=Sequence derived from alignment at P-wetherbeei_contig7821:26..1853+ (Phaeothamnion wetherbeei SAG_119_79)
AAGGCCATCGAGCCGGTCACAATCATCACCGACAATGACGCGGCCGCCGC
CGCAGGTATACGAGCGGAGTTTCCCGGCACCAAGCACTTCTTGTGCGTAT
GGCATTTCATGATGAATGTCAACGAGCACGCCAGCGCGGCGTGGGGAGGC
GGCGGCGGGAGGAAGGGCAAGAAGAAGGACGACGGCGACGGCACGGAGGA
GAGCACCAACAAGACGGAGTTCCTCCGGCTGTTCAAGAAGGCCATGTACT
CCACCAGCGAAGCAGCATTCGACAGCCGTTGGGCAACGCTCATGGTGAGT
GTTTCTCGTGCTGGGGGCGGTGGCGGTCATGTGTGGCAGCTTTGGGGAGA
AGGGCGGCAGCCCAGTGCTGGTCACTTTTTTTCTTGCATATGGCATTCAG
ATGCCGGGATGTGTGCGATGCGCATCTGTTGCCTTTGCCGCTATGCGCGC
GTGCTTTTCTGGGAAATCGCAAGGGCTAATCGTCCAAACTTTTGCTTCTG
CTGTCCCCGCCGTTGTTCACAGGGATGGGCGCCGCTGACATCCAAGCCGA
AGCTCCTCGCGTACCTCAAGCGCTTGCACGCCGACAGACATCGGTGGGCG
TTCTTTCCCCGGTCGCGCTTCTTGACGCTGGGCATGACGGCGTCTCAAAG
GGTCGAGTCGTACTTCAACCGCCTGAAGATCTACTTGCGGAACTCAGGCA
GGAAGAAGGGACTCCTCCACATCGCGCAGCACATCCACGACGTCTGCATC
GATGAGCAGCTGGTGGCGGCGGGGGAGGGCGACACAGCCACCGGCATCCG
CTCGCGAGTCCAGCTCGATTCGCTTTGCGTGGACTTCTTCGACAAGGACG
TGCTGACCCCTATTAGGAAGCGGTTTCCAACGTACCTCTGCGACAAGGTG
CGGCTGGAAATAGTGAAGTGCGGGTTCTTCGCTGTGCAGCTGCACGATGC
ACGGCAAGGGGGCGGGTGGTTGGGACCGGGGGAGACGGCGGGGGCTGTCG
CCGCCGCTGCGCAGCCCGTCGAAGACGACGATGCGTTGGCGGCGGATCCC
GACTCGGCGGAGCTTGGCGACGACAGGCCGCGCCTGGACCCGGCAGCCAT
GGCGCAGGCATTTGCGGACAAGGCGGGATACGACGTCGTGTGCCGTGTCA
CGCCGCATCGCCAGGCGGGTTCTTCGCCCAAGTCTCTCGACATCGTCTGC
TGCAACACGAGAACCGGCACCCACGTCTGCTCCTGCACGATGATCTTGCG
GTACGGCTACCCGTGCAGGCATTTTTGGGCTTGCTATCTCAACCGACAAT
CGACGGGGGTCACATTTTCTGTTGACCGCTCGATTCTGCCGCGTTGGCGT
GCCGTCTTGAGCGAGGAGCAGCATGAGGCTGCTGCCGGCGGCGGGGCGGC
AAGCGGCGCGGAGCCAGAGGACCAGCCGACACCAGCCGCGGCGGCCGCAG
CGGCAGCGGCCGCTCCGGCTGCTGCGGCGCCCCACGACAACGGTTTTGCC
GCCGCTGAGTCCGATCCCTTTGACTGCAGCTTTGCAGGGCCGCTGTTCGA
TGGTTTTGCGGCCTACGACGGTCTGACCGCTGGAGCAGCAGTCGTGGCGG
AGCCCGGCTTTGATGCAGTGGGGCCGGCGGCGGCAGCAGCCGCCGTGGAG
GTGGATGCTCCCGTAGGAGGGAGAGGGGTGGCGGCGGCGGCAATCATGGG
CGTGGTCTTCGCCGAAGGCGGCGTCCCGCCGCCCCCGGCGCAGCACCGGC
TGGAGCCTGTGGCAATGCAGCCGGTGCTGCAGTCGCAGGCGGCGGCGCGG
CAGGCCTTTATAAGGCAGCAGGACCGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7821:26..1853+

>mRNA_P-wetherbeei_contig7821.2.1 ID=mRNA_P-wetherbeei_contig7821.2.1|Name=mRNA_P-wetherbeei_contig7821.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1599bp|location=Sequence derived from alignment at P-wetherbeei_contig7821:26..1853+ (Phaeothamnion wetherbeei SAG_119_79)
AAGGCCATCGAGCCGGTCACAATCATCACCGACAATGACGCGGCCGCCGC
CGCAGGTATACGAGCGGAGTTTCCCGGCACCAAGCACTTCTTGTGCGTAT
GGCATTTCATGATGAATGTCAACGAGCACGCCAGCGCGGCGTGGGGAGGC
GGCGGCGGGAGGAAGGGCAAGAAGAAGGACGACGGCGACGGCACGGAGGA
GAGCACCAACAAGACGGAGTTCCTCCGGCTGTTCAAGAAGGCCATGTACT
CCACCAGCGAAGCAGCATTCGACAGCCGTTGGGCAACGCTCATGGGATGG
GCGCCGCTGACATCCAAGCCGAAGCTCCTCGCGTACCTCAAGCGCTTGCA
CGCCGACAGACATCGGTGGGCGTTCTTTCCCCGGTCGCGCTTCTTGACGC
TGGGCATGACGGCGTCTCAAAGGGTCGAGTCGTACTTCAACCGCCTGAAG
ATCTACTTGCGGAACTCAGGCAGGAAGAAGGGACTCCTCCACATCGCGCA
GCACATCCACGACGTCTGCATCGATGAGCAGCTGGTGGCGGCGGGGGAGG
GCGACACAGCCACCGGCATCCGCTCGCGAGTCCAGCTCGATTCGCTTTGC
GTGGACTTCTTCGACAAGGACGTGCTGACCCCTATTAGGAAGCGGTTTCC
AACGTACCTCTGCGACAAGGTGCGGCTGGAAATAGTGAAGTGCGGGTTCT
TCGCTGTGCAGCTGCACGATGCACGGCAAGGGGGCGGGTGGTTGGGACCG
GGGGAGACGGCGGGGGCTGTCGCCGCCGCTGCGCAGCCCGTCGAAGACGA
CGATGCGTTGGCGGCGGATCCCGACTCGGCGGAGCTTGGCGACGACAGGC
CGCGCCTGGACCCGGCAGCCATGGCGCAGGCATTTGCGGACAAGGCGGGA
TACGACGTCGTGTGCCGTGTCACGCCGCATCGCCAGGCGGGTTCTTCGCC
CAAGTCTCTCGACATCGTCTGCTGCAACACGAGAACCGGCACCCACGTCT
GCTCCTGCACGATGATCTTGCGGTACGGCTACCCGTGCAGGCATTTTTGG
GCTTGCTATCTCAACCGACAATCGACGGGGGTCACATTTTCTGTTGACCG
CTCGATTCTGCCGCGTTGGCGTGCCGTCTTGAGCGAGGAGCAGCATGAGG
CTGCTGCCGGCGGCGGGGCGGCAAGCGGCGCGGAGCCAGAGGACCAGCCG
ACACCAGCCGCGGCGGCCGCAGCGGCAGCGGCCGCTCCGGCTGCTGCGGC
GCCCCACGACAACGGTTTTGCCGCCGCTGAGTCCGATCCCTTTGACTGCA
GCTTTGCAGGGCCGCTGTTCGATGGTTTTGCGGCCTACGACGGTCTGACC
GCTGGAGCAGCAGTCGTGGCGGAGCCCGGCTTTGATGCAGTGGGGCCGGC
GGCGGCAGCAGCCGCCGTGGAGGTGGATGCTCCCGTAGGAGGGAGAGGGG
TGGCGGCGGCGGCAATCATGGGCGTGGTCTTCGCCGAAGGCGGCGTCCCG
CCGCCCCCGGCGCAGCACCGGCTGGAGCCTGTGGCAATGCAGCCGGTGCT
GCAGTCGCAGGCGGCGGCGCGGCAGGCCTTTATAAGGCAGCAGGACCGC
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