mRNA_P-wetherbeei_contig7820.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig7820.1.1 vs. uniprot
Match: A0A7S4ECG4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4ECG4_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 1.070e-17 Identity = 49/108 (45.37%), Postives = 63/108 (58.33%), Query Frame = 2
Query: 401 RDYASLAREYLSTQVYRDLQLSAPAVDCVVCRRRPAGLVLFPCSHRSVCGACWQDQPAGEK-------MCAVCGTAVKRAIPYADGREAQRYWAWVEEVKPPLPPGFA 703
+DY +LA Y + YRDL S P CV+C R P VLFPC H+ VC +C Q GE +C +C +KR +P +DGRE ++YW WV EV+P LPP FA
Sbjct: 145 KDYIALADAYKLEKQYRDLT-SLPT--CVMCHRNPCHDVLFPCEHKCVCRSCLQTNGIGESREEGKWPLCPLCCQEIKRILP-SDGREVEKYWNWVLEVEPRLPPKFA 248
BLAST of mRNA_P-wetherbeei_contig7820.1.1 vs. uniprot
Match: A0A7S4HUM7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HUM7_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 1.880e-14 Identity = 49/118 (41.53%), Postives = 68/118 (57.63%), Query Frame = 2
Query: 401 RDYASLAREYLSTQVYRDLQLSAPAVD--CVVCRRR--PAGLVL----FPCSHRSVCGACWQDQPAGE----KMCAVCGTAVKRAIPYADGREAQRYWAWVEEVKPPLPPGFACEFKA 718
+DY LAR+Y ST+ YR + P + CV+CRR A +VL FPC HR VC C++++ G MC +CG +K + +G E +RYW WVEEVKP +P F +F+A
Sbjct: 367 KDYPGLARQYKSTEPYRG---NNPGGNPRCVLCRREGEDASVVLRRVFFPCEHRCVCNRCYREERMGPGRRANMCPLCGEEIK-FVAERNGSERERYWDWVEEVKPFIPAAFVRKFRA 480
BLAST of mRNA_P-wetherbeei_contig7820.1.1 vs. uniprot
Match: A0A662XL80_9STRA (RING-type domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XL80_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 2.490e-8 Identity = 43/139 (30.94%), Postives = 66/139 (47.48%), Query Frame = 2
Query: 401 RDYASLAREYLSTQVY-RDLQLSAPA-VDCVVCRRRPAGLVLFPCSHRSVCGACWQD-------QPAGEKMCAVCGTAVKRAIPYADGREAQRYWAWVEEVKPPLPPGFACEFKAAAVILQMKAEGTYVDDPPRKPCCI 790
++Y L + + Q Y R S P+ C+ C V FPC H VC C + QP+ +C +C T ++ +P+ G+E ++YW WV EVKP +P F EFK A L+ + + + PR+ I
Sbjct: 98 KNYPELVKGFKQLQPYTRHPDGSYPSHTRCIYCANAGPTSVFFPCQHMCVCDDCIKAAKLSPDAQPSC--LCPICMTDIRLILPHT-GKEEEKYWKWVMEVKPSMPSHFKQEFKEAGKNLRKNSIAS-TEPAPRRSTII 232
BLAST of mRNA_P-wetherbeei_contig7820.1.1 vs. uniprot
Match: A0A662XMJ4_9STRA (RING-type domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XMJ4_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 2.620e-8 Identity = 35/88 (39.77%), Postives = 44/88 (50.00%), Query Frame = 2
Query: 482 CVVCRRRPAGLVLFPCSHRSVCGACWQDQ-------PAGEK-MCAVCGTAVKRAIPYADGREAQRYWAWVEEVKPPLPPGFACEFKAA 721
CV C V FPC H VC C + P+ E MC VC ++ +P+ G+E ++YW WV EVKP LP F EFK A
Sbjct: 178 CVYCANARPTSVFFPCQHMCVCNDCIEQNNLSPDYSPSAEWCMCPVCAVDIRLILPHT-GKEEEKYWRWVLEVKPSLPSHFKQEFKEA 264
BLAST of mRNA_P-wetherbeei_contig7820.1.1 vs. uniprot
Match: A0A6H5JCM1_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM1_9PHAE) HSP 1 Score: 60.8 bits (146), Expect = 1.560e-7 Identity = 30/81 (37.04%), Postives = 43/81 (53.09%), Query Frame = 2
Query: 380 MQQDNCCRDYASLAREYLSTQVYRDLQLSAPAVDCVVCRRRPAGLVLFPCSHRSVCGACWQDQPAG--------EKMCAVC 598
++ D C+DY S A+EY T +RD + CV+C++R A VLFPC H+ VC C + + G E +C VC
Sbjct: 105 IEDDEPCKDYISFAKEYYLTAPFRD---TGGKQTCVICQKRKASAVLFPCEHKCVCARCIEREGFGATRTASEREALCPVC 182
BLAST of mRNA_P-wetherbeei_contig7820.1.1 vs. uniprot
Match: A0A662XC14_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XC14_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 2.720e-7 Identity = 34/93 (36.56%), Postives = 44/93 (47.31%), Query Frame = 2
Query: 482 CVVCRRRPAGLVLFPCSHRSVCGACWQDQ-------PAGE------KMCAVCGTAVKRAIPYADGREAQRYWAWVEEVKPPLPPGFACEFKAA 721
CV C V FPC H VC C + P+ E + AVC ++ +P+ G+E ++YW WV EVKP LP F EFK A
Sbjct: 54 CVYCANARPTSVFFPCQHMCVCNDCIEQNSLSPDYSPSAEWWYVLSLLSAVCAVDIRLILPHT-GKEEEKYWKWVMEVKPSLPSHFKQEFKEA 145
BLAST of mRNA_P-wetherbeei_contig7820.1.1 vs. uniprot
Match: D8LJV1_ECTSI (Similar to Cell growth regulator with RING finger domain 1 (Cell growth regulatory gene 19 protein) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJV1_ECTSI) HSP 1 Score: 58.9 bits (141), Expect = 7.280e-7 Identity = 53/206 (25.73%), Postives = 71/206 (34.47%), Query Frame = 2
Query: 5 PLPKSWIQHVDEASKKTFYYHKGTGLTQWSTPREEPPGGGAKPLPGRPAGASSENLEAFAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAATDFQAAEISSVAATAMQQDNCCRDYASLAREYLSTQVYRDLQLSAPAVDCVVCRRRPAGLVLFPCSHRSVCGACWQDQPAG--------EKMCAVC 598
P SW +H D +SK+ FYY TG T W R PP + L G E + V A D E ++ D +DY S A+EY T +RD + CV+C++R A VLFPC H+ VC C + + G E +C VC
Sbjct: 6 PAVGSWTKHWDPSSKQHFYYDPSTGQTTWG--RSVPPEKSTESLKREGEGNLLEGI------------------FLQQAKETAQHHDVRPRRRKRGVSKDRKNNNRVFADDDLPQNET-------IEDDEPRKDYISFAKEYYLTAPFRD---TGGKQICVICQKRKASAVLFPCEHKCVCARCIESEGFGAMRKASEREALCPVC 181 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7820.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig7820.1.1 >prot_P-wetherbeei_contig7820.1.1 ID=prot_P-wetherbeei_contig7820.1.1|Name=mRNA_P-wetherbeei_contig7820.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=188bp MAAAFGGVTTKAAPSDQQHHPPKRKSSGKVAAATDFQAAEISSVAATAMQback to top mRNA from alignment at P-wetherbeei_contig7820:127..1213- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig7820.1.1 ID=mRNA_P-wetherbeei_contig7820.1.1|Name=mRNA_P-wetherbeei_contig7820.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1087bp|location=Sequence derived from alignment at P-wetherbeei_contig7820:127..1213- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig7820:127..1213- >mRNA_P-wetherbeei_contig7820.1.1 ID=mRNA_P-wetherbeei_contig7820.1.1|Name=mRNA_P-wetherbeei_contig7820.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=564bp|location=Sequence derived from alignment at P-wetherbeei_contig7820:127..1213- (Phaeothamnion wetherbeei SAG_119_79)back to top |