mRNA_P-wetherbeei_contig7820.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7820.3.1
Unique NamemRNA_P-wetherbeei_contig7820.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7820.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7820contigP-wetherbeei_contig7820:1042..1817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size517
Hectar predicted targeting categoryother localisation
Exons2
Cds size360
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187002.8354645-UTR-P-wetherbeei_contig7820:1041..11291683187002.8354645-UTR-P-wetherbeei_contig7820:1041..1129Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7820 1042..1129 +
1683187002.8439896-UTR-P-wetherbeei_contig7820:1388..14531683187002.8439896-UTR-P-wetherbeei_contig7820:1388..1453Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7820 1389..1453 +
1683187002.8626149-UTR-P-wetherbeei_contig7820:1813..18171683187002.8626149-UTR-P-wetherbeei_contig7820:1813..1817Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7820 1814..1817 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187002.8518596-CDS-P-wetherbeei_contig7820:1453..18131683187002.8518596-CDS-P-wetherbeei_contig7820:1453..1813Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7820 1454..1813 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7820.3.1prot_P-wetherbeei_contig7820.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7820 1454..1813 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7820.3.1

>prot_P-wetherbeei_contig7820.3.1 ID=prot_P-wetherbeei_contig7820.3.1|Name=mRNA_P-wetherbeei_contig7820.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=120bp
MVSGNARPTAFSQSVLLRRAAAAATAGAPSENASAPPPSPTTKSERLGIA
AIAILRRNAARTRKAAEGSHPTGDNDSDASGTARRKAAENHNQPKFTRAW
AKAQKAFQAQKATMSRSRR*
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mRNA from alignment at P-wetherbeei_contig7820:1042..1817+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7820.3.1 ID=mRNA_P-wetherbeei_contig7820.3.1|Name=mRNA_P-wetherbeei_contig7820.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=776bp|location=Sequence derived from alignment at P-wetherbeei_contig7820:1042..1817+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGATCCGACATCATGACGAGAAGCATGGAAGCGCTCGATAACCGC
AACGAGGGACCTTCGAACACGTTGGTCGTAGTACCTGGGTGAGCCCGGTC
CCTTTATGGTAGTAAAACGTCTTCTTGCTCGCTTCATCGACGTGCTGAAT
CCAACTCTTCGGCAGGGGCCTTCCATTCTGACGTCCTCCGCTGCTTCCTC
CAATTTGGTCCGTCGCCACATTTGGCATTGGTGGAGCTATCTTTCAGTTT
TTGCGTCCACTGCAGCAAATCGGACGCTATGGCTTCCATGCAAGCTGACA
GACGCCGGGCTATGTCGCTCTTTCCCTTCTCTGTACTCGCATCGCAGAAT
CGTCGACGGTTTCACCACAAGTAACGCTTTCAAAAGAGGCCCTCTTTGGG
CGTGAGAAGAGCATGGTGTCGGGAAATGCTCGGCCGACGGCCTTCTCCCA
ATCCGTCCTCCTTCGGCGCGCTGCAGCGGCTGCGACAGCTGGAGCTCCCT
CAGAAAATGCCTCTGCACCTCCACCGTCGCCGACCACCAAATCTGAGCGC
CTCGGCATTGCCGCAATCGCAATTCTACGAAGAAATGCAGCGCGCACGCG
CAAGGCTGCGGAAGGTAGTCACCCAACGGGCGATAACGACAGCGATGCAT
CGGGAACTGCGAGGCGTAAGGCGGCTGAAAATCACAACCAGCCAAAGTTC
ACGCGCGCATGGGCCAAGGCACAAAAGGCCTTTCAGGCCCAGAAAGCTAC
AATGTCTCGCAGCCGGAGGTAAGCGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7820:1042..1817+

>mRNA_P-wetherbeei_contig7820.3.1 ID=mRNA_P-wetherbeei_contig7820.3.1|Name=mRNA_P-wetherbeei_contig7820.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig7820:1042..1817+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGTCGGGAAATGCTCGGCCGACGGCCTTCTCCCAATCCGTCCTCCT
TCGGCGCGCTGCAGCGGCTGCGACAGCTGGAGCTCCCTCAGAAAATGCCT
CTGCACCTCCACCGTCGCCGACCACCAAATCTGAGCGCCTCGGCATTGCC
GCAATCGCAATTCTACGAAGAAATGCAGCGCGCACGCGCAAGGCTGCGGA
AGGTAGTCACCCAACGGGCGATAACGACAGCGATGCATCGGGAACTGCGA
GGCGTAAGGCGGCTGAAAATCACAACCAGCCAAAGTTCACGCGCGCATGG
GCCAAGGCACAAAAGGCCTTTCAGGCCCAGAAAGCTACAATGTCTCGCAG
CCGGAGGTAA
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