mRNA_P-wetherbeei_contig782.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig782.1.1
Unique NamemRNA_P-wetherbeei_contig782.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig782.1.1 vs. uniprot
Match: A0A835YXZ6_9STRA (Putative autophagocytosis associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXZ6_9STRA)

HSP 1 Score: 147 bits (371), Expect = 2.260e-41
Identity = 67/94 (71.28%), Postives = 80/94 (85.11%), Query Frame = 1 
Query:    1 MASLLSAVKGVREYLTPVRVISGFLDKGVLTPDEFVAAGDQLVFKCPTWSWEAGEPSKAKPYLPPNKQFLVTRKVPCHRRITSLENDYLGDNEI 282
            M+SLLS  KG+RE L PVRV S + +KGVLTP+EFV AGDQLVFKCPTWSWEAG+PSKAKPYLP +KQ+L+T+ VPC RR+ SLE+DYL + EI
Sbjct:    1 MSSLLSYAKGIRERLAPVRVTSAYQEKGVLTPEEFVLAGDQLVFKCPTWSWEAGDPSKAKPYLPVDKQYLITKGVPCLRRVASLESDYLEETEI 94
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BLAST of mRNA_P-wetherbeei_contig782.1.1 vs. uniprot
Match: A0A6H5KFB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFB3_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 1.620e-35
Identity = 58/92 (63.04%), Postives = 72/92 (78.26%), Query Frame = 1 
Query:   10 LLSAVKGVREYLTPVRVISGFLDKGVLTPDEFVAAGDQLVFKCPTWSWEAGEPSKAKPYLPP-NKQFLVTRKVPCHRRITSLENDYLGDNEI 282
            +LS  K +RE +TP R  S FL +GVLTP+EF+ AG+QLVFKCPTW+WEAG+PSKAK  LP  ++QFLVTR VPCHRR   LE +Y+GD E+
Sbjct:    1 MLSLAKRIRETVTPARRTSAFLSQGVLTPEEFIEAGEQLVFKCPTWTWEAGDPSKAKDCLPDKSRQFLVTRNVPCHRRAKDLEGEYVGDTEV 92
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BLAST of mRNA_P-wetherbeei_contig782.1.1 vs. uniprot
Match: A0A225VEN1_9STRA (Autophagocytosis associated protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VEN1_9STRA)

HSP 1 Score: 131 bits (329), Expect = 4.320e-35
Identity = 60/94 (63.83%), Postives = 71/94 (75.53%), Query Frame = 1 
Query:   16 SAVKGVREYLTPVRVISGFLDKGVLTPDEFVAAGDQLVFKCPTWSWEAGEPSKAKPYLPPNKQFLVTRKVPCHRRITSLENDYLGDNEIGGLEE 297
            S   GVREYLTPV   S F DKG+LTP+EFV AGD LV+KCPTW WE+GEPS  +PYLP +KQFLVTR VPC RR+TSLE +Y  +  + G +E
Sbjct:    3 SLFHGVREYLTPVLTESSFEDKGLLTPEEFVQAGDLLVYKCPTWRWESGEPSLRRPYLPADKQFLVTRNVPCRRRVTSLEQNYQMEEAVDGEDE 96
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BLAST of mRNA_P-wetherbeei_contig782.1.1 vs. uniprot
Match: A0A8K1CQS8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQS8_PYTOL)

HSP 1 Score: 130 bits (328), Expect = 4.650e-35
Identity = 58/91 (63.74%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:   16 SAVKGVREYLTPVRVISGFLDKGVLTPDEFVAAGDQLVFKCPTWSWEAGEPSKAKPYLPPNKQFLVTRKVPCHRRITSLENDYLGDNEIGG 288
            S   GVREYLTPV   S F DKGVLTP+EFV AGD LV+KCPTW WE+GEPS  +PYLP +KQ+LVTR VPC RR+T+L+  Y G+  + G
Sbjct:    3 SLFHGVREYLTPVLTESAFQDKGVLTPEEFVQAGDLLVYKCPTWRWESGEPSLRRPYLPADKQYLVTRNVPCRRRVTALDKTYQGETAVDG 93
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BLAST of mRNA_P-wetherbeei_contig782.1.1 vs. uniprot
Match: R1G200_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1G200_EMIHU)

HSP 1 Score: 128 bits (322), Expect = 3.190e-34
Identity = 57/79 (72.15%), Postives = 65/79 (82.28%), Query Frame = 1 
Query:   16 SAVKGVREYLTPVRVISGFLDKGVLTPDEFVAAGDQLVFKCPTWSWEAGEPSKAKPYLPPNKQFLVTRKVPCHRRITSL 252
            +A+ G  EYLTPV   S FL+KGVLTPDEFV AGDQLV +CPTWSW+AGEP KA+P+LPPNKQ+LVTR VPC RR  SL
Sbjct:   18 NAMLGTAEYLTPVLTTSQFLEKGVLTPDEFVEAGDQLVLRCPTWSWQAGEPDKARPFLPPNKQYLVTRSVPCQRRAASL 96
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BLAST of mRNA_P-wetherbeei_contig782.1.1 vs. uniprot
Match: M4BYE5_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BYE5_HYAAE)

HSP 1 Score: 128 bits (321), Expect = 8.860e-34
Identity = 59/94 (62.77%), Postives = 69/94 (73.40%), Query Frame = 1 
Query:   16 SAVKGVREYLTPVRVISGFLDKGVLTPDEFVAAGDQLVFKCPTWSWEAGEPSKAKPYLPPNKQFLVTRKVPCHRRITSLENDYLGDNEIGGLEE 297
            S + GVREYLTPV   S F DKG+LTP+EFV AGD LV+KCPTW WE+GEPS  + YLP  KQFLVTR VPC RR+TSLE  Y  +  + G +E
Sbjct:    3 SLLHGVREYLTPVLTESSFEDKGLLTPEEFVKAGDLLVYKCPTWRWESGEPSLRRAYLPAAKQFLVTRNVPCRRRVTSLEQSYQAEEAVEGEDE 96
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BLAST of mRNA_P-wetherbeei_contig782.1.1 vs. uniprot
Match: I2CS16_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CS16_NANGC)

HSP 1 Score: 120 bits (302), Expect = 9.520e-34
Identity = 54/85 (63.53%), Postives = 65/85 (76.47%), Query Frame = 1 
Query:   10 LLSAVKGVREYLTPVRVISGFLDKGVLTPDEFVAAGDQLVFKCPTWSWEAGEPSKAKPYLPPNKQFLVTRKVPCHRRITSLENDY 264
            L S +KGVREY  PV   S F+++GVLTP EFV AGDQLV++CPTWSWE G+P+K KPYLP +KQ+LVTR VPC RR    E +Y
Sbjct:    5 LTSFLKGVREYAYPVLDKSAFMERGVLTPQEFVLAGDQLVYRCPTWSWEGGDPTKRKPYLPVDKQYLVTRNVPCARRAKMFEEEY 89
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BLAST of mRNA_P-wetherbeei_contig782.1.1 vs. uniprot
Match: K3X371_GLOUD (Autophagy-related protein 3 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X371_GLOUD)

HSP 1 Score: 127 bits (320), Expect = 1.030e-33
Identity = 58/90 (64.44%), Postives = 70/90 (77.78%), Query Frame = 1 
Query:   28 GVREYLTPVRVISGFLDKGVLTPDEFVAAGDQLVFKCPTWSWEAGEPSKAKPYLPPNKQFLVTRKVPCHRRITSLENDYLGDNEIGGLEE 297
            GVREYLTPV   S F DKG+LTP+EFV AGD LV+KCPTW WE+GEPS  +PYLP +KQ+LVTR VPC RR+TSLE +Y  +  + G +E
Sbjct:    7 GVREYLTPVLKESSFEDKGLLTPEEFVKAGDLLVYKCPTWRWESGEPSLRRPYLPADKQYLVTRNVPCQRRVTSLELNYQTERAVEGEDE 96
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BLAST of mRNA_P-wetherbeei_contig782.1.1 vs. uniprot
Match: A0A3R7KIS0_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KIS0_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.920e-33
Identity = 58/91 (63.74%), Postives = 67/91 (73.63%), Query Frame = 1 
Query:   16 SAVKGVREYLTPVRVISGFLDKGVLTPDEFVAAGDQLVFKCPTWSWEAGEPSKAKPYLPPNKQFLVTRKVPCHRRITSLENDYLGDNEIGG 288
            S   GVREYLTPV   S F DKG+LTP+EFV AGD LV+KCPTW WE+GEPS  + YLP +KQFLVTR VPC RR+TSLE  Y  +  + G
Sbjct:    3 SLFHGVREYLTPVLTESSFEDKGLLTPEEFVKAGDLLVYKCPTWRWESGEPSLRRSYLPADKQFLVTRNVPCRRRVTSLEQSYQTEEAVDG 93
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BLAST of mRNA_P-wetherbeei_contig782.1.1 vs. uniprot
Match: D0NKV4_PHYIT (Autophagocytosis associated protein, putative n=3 Tax=Phytophthora TaxID=4783 RepID=D0NKV4_PHYIT)

HSP 1 Score: 126 bits (316), Expect = 1.930e-33
Identity = 57/93 (61.29%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:   16 SAVKGVREYLTPVRVISGFLDKGVLTPDEFVAAGDQLVFKCPTWSWEAGEPSKAKPYLPPNKQFLVTRKVPCHRRITSLENDYLGDNEIGGLE 294
            S   GVREYLTPV   S F DKG+LTP+EFV AGD LV+KCPTW WE+G+PS  + YLP +KQFL+TR VPC RR+TSLE  Y  +  + G E
Sbjct:    3 SLFHGVREYLTPVLTESSFEDKGLLTPEEFVKAGDLLVYKCPTWRWESGDPSMRRSYLPADKQFLITRNVPCRRRVTSLEQSYQTEEAVEGEE 95
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig782.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YXZ6_9STRA2.260e-4171.28Putative autophagocytosis associated protein n=1 T... [more]
A0A6H5KFB3_9PHAE1.620e-3563.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A225VEN1_9STRA4.320e-3563.83Autophagocytosis associated protein n=1 Tax=Phytop... [more]
A0A8K1CQS8_PYTOL4.650e-3563.74Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
R1G200_EMIHU3.190e-3472.15Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
M4BYE5_HYAAE8.860e-3462.77Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
I2CS16_NANGC9.520e-3463.53Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
K3X371_GLOUD1.030e-3364.44Autophagy-related protein 3 n=1 Tax=Globisporangiu... [more]
A0A3R7KIS0_9STRA1.920e-3363.74Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
D0NKV4_PHYIT1.930e-3361.29Autophagocytosis associated protein, putative n=3 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig782contigP-wetherbeei_contig782:28..409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FLZ2
Preferred nameATG3
PFAMsAutophagy_C,Autophagy_N,Autophagy_act_C
Model size297
Max annot lvl2759|Eukaryota
KEGG koko:K08343
KEGG Pathwayko04136,ko04138,ko04140,ko05167,map04136,map04138,map04140,map05167
Hectar predicted targeting categoryother localisation
GOsGO:0000045,GO:0000151,GO:0000153,GO:0000272,GO:0000422,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005776,GO:0005829,GO:0005975,GO:0005976,GO:0005977,GO:0005980,GO:0006073,GO:0006091,GO:0006112,GO:0006464,GO:0006497,GO:0006501,GO:0006605,GO:0006612,GO:0006807,GO:0006810,GO:0006886,GO:0006914,GO:0006915,GO:0006950,GO:0006996,GO:0007005,GO:0007033,GO:0007154,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009251,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0012501,GO:0015031,GO:0015833,GO:0015980,GO:0016043,GO:0016052,GO:0016236,GO:0016237,GO:0016567,GO:0016740,GO:0018410,GO:0019538,GO:0019776,GO:0019777,GO:0019787,GO:0019899,GO:0022411,GO:0022607,GO:0030100,GO:0031344,GO:0031667,GO:0031668,GO:0031669,GO:0032258,GO:0032446,GO:0032879,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0033554,GO:0034613,GO:0034645,GO:0034727,GO:0036211,GO:0042157,GO:0042158,GO:0042594,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043653,GO:0043687,GO:0044042,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044275,GO:0044424,GO:0044444,GO:0044464,GO:0044804,GO:0044805,GO:0045184,GO:0045806,GO:0046907,GO:0048519,GO:0048523,GO:0050764,GO:0050765,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051128,GO:0051129,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0055114,GO:0060491,GO:0060627,GO:0061723,GO:0061726,GO:0061912,GO:0061919,GO:0065007,GO:0070647,GO:0070727,GO:0070925,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072657,GO:0072665,GO:0090150,GO:0120032,GO:0120035,GO:0140096,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902017,GO:1902115,GO:1902494,GO:1903008,GO:1905037,GO:1990234
Exons2
Evalue4.34e-34
EggNOG OGsKOG2981@1|root,KOG2981@2759|Eukaryota
DescriptionAtg8 ligase activity
Cds size297
COG categoryO
BRITEko00000,ko00001,ko03029,ko04121,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187002.6202748-CDS-P-wetherbeei_contig782:27..1011683187002.6202748-CDS-P-wetherbeei_contig782:27..101Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig782 28..101 -
1683187002.634333-CDS-P-wetherbeei_contig782:186..4091683187002.634333-CDS-P-wetherbeei_contig782:186..409Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig782 187..409 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig782.1.1prot_P-wetherbeei_contig782.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig782 28..409 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig782.1.1

>prot_P-wetherbeei_contig782.1.1 ID=prot_P-wetherbeei_contig782.1.1|Name=mRNA_P-wetherbeei_contig782.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=99bp
MASLLSAVKGVREYLTPVRVISGFLDKGVLTPDEFVAAGDQLVFKCPTWS
WEAGEPSKAKPYLPPNKQFLVTRKVPCHRRITSLENDYLGDNEIGGLEE
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mRNA from alignment at P-wetherbeei_contig782:28..409-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig782.1.1 ID=mRNA_P-wetherbeei_contig782.1.1|Name=mRNA_P-wetherbeei_contig782.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=382bp|location=Sequence derived from alignment at P-wetherbeei_contig782:28..409- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGTCCCTGCTCTCCGCCGTCAAGGGCGTGCGGGAGTACTTGACCCC
GGTGCGCGTTATATCGGGTTTCTTGGACAAGGGCGTCCTCACTCCGGACG
AATTTGTTGCTGCGGGAGACCAACTCGTCTTCAAGTGCCCGACATGGTCT
TGGGAGGCCGGTGAACCGTCGAAGGCGAAGCCGTACCTGCCGCCGAACAA
GCAGTTCCTCGTTACGCGCAAAGGTGAGTCAACATTGACGTGCTCTCCCT
AAAATCACACTCGCCTCCAAACAAGTCATTCTCCTCAATCGTCAAACCCT
GCTTACAGTGCCATGTCACCGACGAATCACAAGCCTGGAAAACGACTATC
TCGGAGACAACGAGATCGGAGGGTTGGAGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig782:28..409-

>mRNA_P-wetherbeei_contig782.1.1 ID=mRNA_P-wetherbeei_contig782.1.1|Name=mRNA_P-wetherbeei_contig782.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig782:28..409- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGTCCCTGCTCTCCGCCGTCAAGGGCGTGCGGGAGTACTTGACCCC
GGTGCGCGTTATATCGGGTTTCTTGGACAAGGGCGTCCTCACTCCGGACG
AATTTGTTGCTGCGGGAGACCAACTCGTCTTCAAGTGCCCGACATGGTCT
TGGGAGGCCGGTGAACCGTCGAAGGCGAAGCCGTACCTGCCGCCGAACAA
GCAGTTCCTCGTTACGCGCAAAGTGCCATGTCACCGACGAATCACAAGCC
TGGAAAACGACTATCTCGGAGACAACGAGATCGGAGGGTTGGAGGAG
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