mRNA_P-wetherbeei_contig7812.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7812.3.1
Unique NamemRNA_P-wetherbeei_contig7812.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7812.3.1 vs. uniprot
Match: A0A1F4AST7_9PROT (Uncharacterized protein n=3 Tax=Betaproteobacteria TaxID=28216 RepID=A0A1F4AST7_9PROT)

HSP 1 Score: 131 bits (329), Expect = 2.040e-36
Identity = 66/118 (55.93%), Postives = 83/118 (70.34%), Query Frame = 1
Query:    1 HTATLRLIALLPERSPAASAPPVLHPLFQKLARAHDEREALATEERIWALWMSHPNAAATKVLDRATGDIAARRYDIAETRLVRLLRVCPGYAEAWHKLGTLYYLLGRDEECLAQLHR 354
            +  TLRLIA   ER+P+   PP L PLF++LA    + EA  TE+RIW LWM+HPNAAA ++LDRA  DIA R YDIAETRL  LLR  P + EAW+K  TLYYL+ RD++ +  +HR
Sbjct:    2 YAETLRLIATFSERAPSPVLPPRLGPLFKRLAATTLQIEADQTEDRIWELWMAHPNAAAARMLDRAATDIATRLYDIAETRLGTLLRARPDFPEAWNKRATLYYLIERDDDFVRDVHR 119          
BLAST of mRNA_P-wetherbeei_contig7812.3.1 vs. uniprot
Match: A0A0S8B656_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium SG8_39 TaxID=1703390 RepID=A0A0S8B656_9PROT)

HSP 1 Score: 129 bits (324), Expect = 8.050e-36
Identity = 64/114 (56.14%), Postives = 78/114 (68.42%), Query Frame = 1
Query:   13 LRLIALLPERSPAASAPPVLHPLFQKLARAHDEREALATEERIWALWMSHPNAAATKVLDRATGDIAARRYDIAETRLVRLLRVCPGYAEAWHKLGTLYYLLGRDEECLAQLHR 354
            + LIA   +R PA + P  L  LFQ+L+    E +ALA EERIW +WM HP+  A++ LDR+  DIAARR+D+AETRL RLLR  PGY EAWHK  TLYYLLG D  C+  L R
Sbjct:    1 MSLIAARHQRRPACTTP-ALDALFQRLSACTSEADALAVEERIWHIWMHHPHRIASEALDRSADDIAARRFDVAETRLTRLLRCLPGYVEAWHKRATLYYLLGDDLHCVQDLSR 113          
BLAST of mRNA_P-wetherbeei_contig7812.3.1 vs. uniprot
Match: A0A536T2S3_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536T2S3_9PROT)

HSP 1 Score: 126 bits (317), Expect = 1.100e-34
Identity = 70/114 (61.40%), Postives = 76/114 (66.67%), Query Frame = 1
Query:   13 LRLIALLPERSPAASAPPVLHPLFQKLARAHDEREALATEERIWALWMSHPNAAATKVLDRATGDIAARRYDIAETRLVRLLRVCPGYAEAWHKLGTLYYLLGRDEECLAQLHR 354
            L LIA   ER PA      L  LFQ+LA A    EAL TE+RIW +WM HP+ AA   LD AT DIAA+RYDIAETRL  LLR  P YAEAWHK  TLYYLLGRD ECL  + R
Sbjct:    9 LALIAARRERRPARDLA-ALAQLFQRLA-ACASIEALETEDRIWGVWMHHPHRAAAAALDAATRDIAAKRYDIAETRLTALLRAAPAYAEAWHKRATLYYLLGRDGECLHDIRR 120          
BLAST of mRNA_P-wetherbeei_contig7812.3.1 vs. uniprot
Match: A0A536WLX1_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536WLX1_9PROT)

HSP 1 Score: 125 bits (315), Expect = 2.210e-34
Identity = 70/114 (61.40%), Postives = 76/114 (66.67%), Query Frame = 1
Query:   13 LRLIALLPERSPAASAPPVLHPLFQKLARAHDEREALATEERIWALWMSHPNAAATKVLDRATGDIAARRYDIAETRLVRLLRVCPGYAEAWHKLGTLYYLLGRDEECLAQLHR 354
            L LIA   ER PA   P  L  LF++LA A   REA  TEERIW +WM HP+ AA   LD AT DIAA+RYDIAETRL  LLR  P YAEAWHK   LYYLLGRD ECL  + R
Sbjct:    9 LDLIATRRERRPARDLP-ALAALFRRLA-ACAAREASDTEERIWGVWMHHPHRAAAAALDAATHDIAAKRYDIAETRLTALLRAAPLYAEAWHKRAALYYLLGRDAECLHDIRR 120          
BLAST of mRNA_P-wetherbeei_contig7812.3.1 vs. uniprot
Match: UPI00135830B4 (hypothetical protein n=1 Tax=Cognatazoarcus halotolerans TaxID=2686016 RepID=UPI00135830B4)

HSP 1 Score: 125 bits (315), Expect = 2.540e-34
Identity = 67/114 (58.77%), Postives = 76/114 (66.67%), Query Frame = 1
Query:   13 LRLIALLPERSPAASAPPVLHPLFQKLARAHDEREALATEERIWALWMSHPNAAATKVLDRATGDIAARRYDIAETRLVRLLRVCPGYAEAWHKLGTLYYLLGRDEECLAQLHR 354
            LRL+  LP R PAA+ PPVL  LF KL   H    A   E+ IW  WMSH NAAA +VLD+A  DIA    DIAETRLVRLLR CP YAEAW+KL  + YL GRD+EC A + R
Sbjct:    9 LRLLPTLPYRRPAAAMPPVLDILFAKLR--HPASNADEVEDLIWDTWMSHRNAAAERVLDKAVDDIARNSLDIAETRLVRLLRQCPDYAEAWNKLSVVLYLAGRDDECTAAICR 120          
BLAST of mRNA_P-wetherbeei_contig7812.3.1 vs. uniprot
Match: A0A521YPJ2_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521YPJ2_9PROT)

HSP 1 Score: 124 bits (311), Expect = 9.410e-34
Identity = 68/114 (59.65%), Postives = 78/114 (68.42%), Query Frame = 1
Query:   13 LRLIALLPERSPAASAPPVLHPLFQKLARAHDEREALATEERIWALWMSHPNAAATKVLDRATGDIAARRYDIAETRLVRLLRVCPGYAEAWHKLGTLYYLLGRDEECLAQLHR 354
            L LIA    R PA      L  LF++LAR     EA ATE+ IW +WM HP++AA + LDRATGDIAA+RYDIAETRL  LLR  P +AEAWHK   LYYLLGRDEECL  + R
Sbjct:   11 LGLIAARRARRPARPLA-FLDELFRRLARCSGA-EAGATEDLIWNVWMDHPHSAAARALDRATGDIAAQRYDIAETRLTLLLRQAPDFAEAWHKRAALYYLLGRDEECLRDIAR 122          
BLAST of mRNA_P-wetherbeei_contig7812.3.1 vs. uniprot
Match: A0A537EEM7_9PROT (Uncharacterized protein n=4 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537EEM7_9PROT)

HSP 1 Score: 121 bits (303), Expect = 1.480e-32
Identity = 66/114 (57.89%), Postives = 74/114 (64.91%), Query Frame = 1
Query:   13 LRLIALLPERSPAASAPPVLHPLFQKLARAHDEREALATEERIWALWMSHPNAAATKVLDRATGDIAARRYDIAETRLVRLLRVCPGYAEAWHKLGTLYYLLGRDEECLAQLHR 354
            L LIA    R PA +    L  LF +LA      EAL TE+RIW  WM HP+ AA + LD AT DIAARRYDIAETRL  LLR  P +AEAWHK   LYYLLGRD+ECL  + R
Sbjct:    9 LGLIADRRARRPARTLL-ALDALFNRLAACGGPDEALRTEDRIWDAWMHHPHRAAAEALDLATRDIAARRYDIAETRLSALLRSAPDFAEAWHKRAALYYLLGRDDECLCDIRR 121          
BLAST of mRNA_P-wetherbeei_contig7812.3.1 vs. uniprot
Match: A0A537A9A5_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537A9A5_9PROT)

HSP 1 Score: 119 bits (299), Expect = 5.820e-32
Identity = 66/114 (57.89%), Postives = 73/114 (64.04%), Query Frame = 1
Query:   13 LRLIALLPERSPAASAPPVLHPLFQKLARAHDEREALATEERIWALWMSHPNAAATKVLDRATGDIAARRYDIAETRLVRLLRVCPGYAEAWHKLGTLYYLLGRDEECLAQLHR 354
            L LIA    R PA      L  LF++L  A    EAL TE+RIW +WM HP+  A   LD AT DIAARRYDIAETRL  LLR  P YAEAWHK   LYYLLGRD+ECL  + R
Sbjct:    9 LSLIAARRSRRPARDLA-ALAQLFRRLG-ACASAEALETEDRIWGMWMHHPHRGAAGALDAATRDIAARRYDIAETRLTALLRSAPLYAEAWHKRAALYYLLGRDDECLRDIRR 120          
BLAST of mRNA_P-wetherbeei_contig7812.3.1 vs. uniprot
Match: A0A1F4F7R2_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4F7R2_9PROT)

HSP 1 Score: 113 bits (282), Expect = 2.100e-29
Identity = 63/114 (55.26%), Postives = 74/114 (64.91%), Query Frame = 1
Query:   13 LRLIALLPERSPAASAPPVLHPLFQKLARAHDEREALATEERIWALWMSHPNAAATKVLDRATGDIAARRYDIAETRLVRLLRVCPGYAEAWHKLGTLYYLLGRDEECLAQLHR 354
            L LIA    R PA + P  L  LF++LA      EA  TE+ IW +WM HP+ AA + LD AT DIAA+RYDIAETRL  LLR  P +AEAWHK  TLYY+L RD ECL  + R
Sbjct:    8 LGLIAARRARRPARALP-FLDELFRRLACCGGA-EASETEDLIWDVWMDHPHRAAARALDLATRDIAAQRYDIAETRLTLLLRRAPEFAEAWHKRATLYYMLARDTECLHDIRR 119          
BLAST of mRNA_P-wetherbeei_contig7812.3.1 vs. uniprot
Match: A0A2E4XPM6_9PROT (Uncharacterized protein n=3 Tax=Proteobacteria TaxID=1224 RepID=A0A2E4XPM6_9PROT)

HSP 1 Score: 89.0 bits (219), Expect = 9.550e-20
Identity = 47/112 (41.96%), Postives = 67/112 (59.82%), Query Frame = 1
Query:   13 LRLIALLPERSPAASAPPVLHPLFQKLARAHDEREALATEERIWALWMSHPNAAATKVLDRATGDIAARRYDIAETRLVRLLRVCPGYAEAWHKLGTLYYLLGRDEECLAQL 348
            L LI  L   +PA + P  L+ LF+ LA+   +      E  IWALW SHP+ +A + ++R  G +A  R+D AE  L  L+R  P +AEAW+K  TLY+LL RD+E +A +
Sbjct:   15 LELILSLDAMAPAPNLPDQLNGLFEDLAKPELDEPLDVVEGSIWALWCSHPDDSAVQRMERVIGGLAQGRFDAAERLLDGLVRDYPDWAEAWNKRATLYFLLDRDDESVADI 126          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7812.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A1F4AST7_9PROT2.040e-3655.93Uncharacterized protein n=3 Tax=Betaproteobacteria... [more]
A0A0S8B656_9PROT8.050e-3656.14Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A536T2S3_9PROT1.100e-3461.40Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A536WLX1_9PROT2.210e-3461.40Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
UPI00135830B42.540e-3458.77hypothetical protein n=1 Tax=Cognatazoarcus haloto... [more]
A0A521YPJ2_9PROT9.410e-3459.65Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A537EEM7_9PROT1.480e-3257.89Uncharacterized protein n=4 Tax=Betaproteobacteria... [more]
A0A537A9A5_9PROT5.820e-3257.89Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4F7R2_9PROT2.100e-2955.26Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A2E4XPM6_9PROT9.550e-2041.96Uncharacterized protein n=3 Tax=Proteobacteria Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7812contigP-wetherbeei_contig7812:2618..2971 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1110502.TMO_0445
PFAMsTPR_16,TPR_2
Model size354
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.4e-14
EggNOG OGsCOG0457@1|root,COG0457@2|Bacteria,1N0DE@1224|Proteobacteria,2UCGA@28211|Alphaproteobacteria,2JTE7@204441|Rhodospirillales
DescriptionCOG0457 FOG TPR repeat
Cds size354
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187002.2392426-CDS-P-wetherbeei_contig7812:2617..29711683187002.2392426-CDS-P-wetherbeei_contig7812:2617..2971Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7812 2618..2971 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7812.3.1prot_P-wetherbeei_contig7812.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7812 2618..2971 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7812.3.1

>prot_P-wetherbeei_contig7812.3.1 ID=prot_P-wetherbeei_contig7812.3.1|Name=mRNA_P-wetherbeei_contig7812.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=118bp
HTATLRLIALLPERSPAASAPPVLHPLFQKLARAHDEREALATEERIWAL
WMSHPNAAATKVLDRATGDIAARRYDIAETRLVRLLRVCPGYAEAWHKLG
TLYYLLGRDEECLAQLHR
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mRNA from alignment at P-wetherbeei_contig7812:2618..2971+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7812.3.1 ID=mRNA_P-wetherbeei_contig7812.3.1|Name=mRNA_P-wetherbeei_contig7812.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig7812:2618..2971+ (Phaeothamnion wetherbeei SAG_119_79)
CACACTGCGACGCTCAGGCTCATCGCACTGCTCCCGGAGCGCAGCCCGGC TGCCTCCGCGCCGCCCGTCCTCCACCCCCTGTTCCAGAAACTCGCGCGCG CGCATGACGAGCGCGAGGCCCTCGCCACCGAAGAACGCATCTGGGCCCTC TGGATGTCGCACCCGAACGCCGCCGCGACGAAGGTGCTCGATCGCGCCAC GGGCGACATCGCCGCGCGCCGCTACGACATCGCGGAGACGCGACTGGTTC GCCTGCTGCGCGTATGCCCGGGGTACGCGGAAGCCTGGCACAAGCTCGGC ACGCTGTACTACCTGCTGGGACGTGACGAGGAGTGCCTCGCCCAGCTGCA CCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7812:2618..2971+

>mRNA_P-wetherbeei_contig7812.3.1 ID=mRNA_P-wetherbeei_contig7812.3.1|Name=mRNA_P-wetherbeei_contig7812.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig7812:2618..2971+ (Phaeothamnion wetherbeei SAG_119_79)
CACACTGCGACGCTCAGGCTCATCGCACTGCTCCCGGAGCGCAGCCCGGC
TGCCTCCGCGCCGCCCGTCCTCCACCCCCTGTTCCAGAAACTCGCGCGCG
CGCATGACGAGCGCGAGGCCCTCGCCACCGAAGAACGCATCTGGGCCCTC
TGGATGTCGCACCCGAACGCCGCCGCGACGAAGGTGCTCGATCGCGCCAC
GGGCGACATCGCCGCGCGCCGCTACGACATCGCGGAGACGCGACTGGTTC
GCCTGCTGCGCGTATGCCCGGGGTACGCGGAAGCCTGGCACAAGCTCGGC
ACGCTGTACTACCTGCTGGGACGTGACGAGGAGTGCCTCGCCCAGCTGCA
CCGG
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