mRNA_P-wetherbeei_contig781.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig781.1.1
Unique NamemRNA_P-wetherbeei_contig781.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig781.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig781contigP-wetherbeei_contig781:846..2147 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1302
Hectar predicted targeting categoryother localisation
Exons1
Cds size1092
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187001.9211528-UTR-P-wetherbeei_contig781:845..10321683187001.9211528-UTR-P-wetherbeei_contig781:845..1032Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig781 846..1032 -
1683187001.94446-UTR-P-wetherbeei_contig781:2124..21471683187001.94446-UTR-P-wetherbeei_contig781:2124..2147Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig781 2125..2147 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187001.9332728-CDS-P-wetherbeei_contig781:1032..21241683187001.9332728-CDS-P-wetherbeei_contig781:1032..2124Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig781 1033..2124 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig781.1.1prot_P-wetherbeei_contig781.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig781 1033..2124 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig781.1.1

>prot_P-wetherbeei_contig781.1.1 ID=prot_P-wetherbeei_contig781.1.1|Name=mRNA_P-wetherbeei_contig781.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=364bp
MRHPLLINVSAGPVCTPWSEERRENASQGCSRSRWPRLGKPFPLLLLWFT
VHLCLVASSFAEPRAEIEESMGGDRLPRTTLIGSFLGTFPRMHRAVPNGW
KNVYIPQPTGGDAMKMIQALVDSVRLLRASHPDTLSLVIITDVPGLKDFA
SDSGDFEVHVPANLSHYHEAWGFLGANDVRFVMQRDYLLELPSPCAFLID
ASDVEVLRHPGALCAERPAGTLAVANDVSGAKFSDPATSPGRWMRQLVKR
THYGDGDTAFARLLADPTLPMLNCGIVGGDAGAVAEFLRRAHEALWARRS
HKLTRPVDMVLANHIAHTWSGPTEFGFPEGLVSLPFRHECGDVTPRCDYG
ELEASGQFFFRHK*
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mRNA from alignment at P-wetherbeei_contig781:846..2147-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig781.1.1 ID=mRNA_P-wetherbeei_contig781.1.1|Name=mRNA_P-wetherbeei_contig781.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1302bp|location=Sequence derived from alignment at P-wetherbeei_contig781:846..2147- (Phaeothamnion wetherbeei SAG_119_79)
GGAAGAGCTCTCCCTCCTCATTCATGAGGCACCCACTACTCATAAACGTC
AGCGCTGGGCCAGTTTGCACGCCATGGTCTGAGGAACGGAGGGAAAATGC
TTCTCAAGGTTGCTCCCGTTCTCGTTGGCCGCGCCTAGGGAAGCCTTTCC
CGCTGCTCTTGTTGTGGTTTACTGTGCATTTGTGCCTCGTGGCTTCGTCT
TTTGCCGAGCCTCGAGCAGAAATAGAGGAATCGATGGGCGGCGATAGGCT
TCCAAGGACGACTCTCATAGGATCGTTTCTGGGGACTTTTCCACGGATGC
ACCGCGCCGTCCCCAACGGGTGGAAGAACGTTTACATCCCCCAGCCAACG
GGAGGGGATGCAATGAAGATGATCCAGGCGCTGGTGGACTCCGTGAGGCT
CCTACGTGCCTCACACCCTGACACTCTTAGCCTGGTCATCATAACCGACG
TGCCGGGCCTGAAAGACTTTGCCAGCGACAGCGGCGACTTTGAAGTGCAC
GTCCCGGCGAACCTCAGCCACTACCACGAGGCCTGGGGCTTCCTCGGCGC
CAATGACGTCCGCTTCGTCATGCAGCGCGATTACCTCTTGGAACTCCCGT
CGCCCTGCGCCTTCCTCATTGACGCCTCCGACGTCGAAGTCCTCCGCCAC
CCGGGCGCCCTCTGCGCCGAGCGGCCCGCCGGCACGCTCGCCGTGGCGAA
CGACGTCTCCGGCGCCAAGTTCTCCGACCCAGCCACCTCGCCTGGCCGCT
GGATGCGCCAGCTGGTCAAGCGCACCCACTATGGCGATGGCGACACCGCC
TTCGCCCGGCTGCTCGCCGACCCGACGCTGCCGATGCTCAACTGCGGCAT
CGTCGGCGGCGACGCCGGCGCTGTCGCCGAGTTTCTGCGGCGAGCGCATG
AGGCGCTGTGGGCGCGCCGCAGCCACAAGCTGACGCGCCCCGTGGACATG
GTGCTGGCCAACCACATCGCGCACACGTGGAGCGGGCCGACGGAGTTCGG
GTTCCCGGAGGGGTTGGTGAGCCTACCGTTCCGGCACGAGTGCGGCGACG
TGACGCCACGCTGCGATTACGGCGAGCTGGAGGCCTCGGGCCAATTCTTC
TTCAGGCACAAGTAGACTACGGAACTTTAACCTACGCTTGGAAGAAAGTT
GCTTTTTTGGTCATTCTTCATTATGGGGATAGCGGAATGGTATACAGGGG
ACGGAAAGAATGAAAAATTTGAATGAAAACACATCTTAAGGTCAGAAATT
GTTTGGCATCTTCAATATCGAGGTACGCTTGTTAAAAACAACGAAAAGAA
AG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig781:846..2147-

>mRNA_P-wetherbeei_contig781.1.1 ID=mRNA_P-wetherbeei_contig781.1.1|Name=mRNA_P-wetherbeei_contig781.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1092bp|location=Sequence derived from alignment at P-wetherbeei_contig781:846..2147- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGGCACCCACTACTCATAAACGTCAGCGCTGGGCCAGTTTGCACGCC
ATGGTCTGAGGAACGGAGGGAAAATGCTTCTCAAGGTTGCTCCCGTTCTC
GTTGGCCGCGCCTAGGGAAGCCTTTCCCGCTGCTCTTGTTGTGGTTTACT
GTGCATTTGTGCCTCGTGGCTTCGTCTTTTGCCGAGCCTCGAGCAGAAAT
AGAGGAATCGATGGGCGGCGATAGGCTTCCAAGGACGACTCTCATAGGAT
CGTTTCTGGGGACTTTTCCACGGATGCACCGCGCCGTCCCCAACGGGTGG
AAGAACGTTTACATCCCCCAGCCAACGGGAGGGGATGCAATGAAGATGAT
CCAGGCGCTGGTGGACTCCGTGAGGCTCCTACGTGCCTCACACCCTGACA
CTCTTAGCCTGGTCATCATAACCGACGTGCCGGGCCTGAAAGACTTTGCC
AGCGACAGCGGCGACTTTGAAGTGCACGTCCCGGCGAACCTCAGCCACTA
CCACGAGGCCTGGGGCTTCCTCGGCGCCAATGACGTCCGCTTCGTCATGC
AGCGCGATTACCTCTTGGAACTCCCGTCGCCCTGCGCCTTCCTCATTGAC
GCCTCCGACGTCGAAGTCCTCCGCCACCCGGGCGCCCTCTGCGCCGAGCG
GCCCGCCGGCACGCTCGCCGTGGCGAACGACGTCTCCGGCGCCAAGTTCT
CCGACCCAGCCACCTCGCCTGGCCGCTGGATGCGCCAGCTGGTCAAGCGC
ACCCACTATGGCGATGGCGACACCGCCTTCGCCCGGCTGCTCGCCGACCC
GACGCTGCCGATGCTCAACTGCGGCATCGTCGGCGGCGACGCCGGCGCTG
TCGCCGAGTTTCTGCGGCGAGCGCATGAGGCGCTGTGGGCGCGCCGCAGC
CACAAGCTGACGCGCCCCGTGGACATGGTGCTGGCCAACCACATCGCGCA
CACGTGGAGCGGGCCGACGGAGTTCGGGTTCCCGGAGGGGTTGGTGAGCC
TACCGTTCCGGCACGAGTGCGGCGACGTGACGCCACGCTGCGATTACGGC
GAGCTGGAGGCCTCGGGCCAATTCTTCTTCAGGCACAAGTAG
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