mRNA_P-wetherbeei_contig7805.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7805.1.1
Unique NamemRNA_P-wetherbeei_contig7805.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig7805.1.1 vs. uniprot
Match: A0A8C8YT38_PROSS (RING-type domain-containing protein n=1 Tax=Prolemur simus TaxID=1328070 RepID=A0A8C8YT38_PROSS)

HSP 1 Score: 77.8 bits (190), Expect = 2.640e-13
Identity = 32/66 (48.48%), Postives = 40/66 (60.61%), Query Frame = 2 
Query: 1202 YEEQRPAVHYGGRLCGICLAEYEMGDPIRTLPCCHFYHQPCIDRWLRRSGLCPFCKGSAKTKSASS 1399
            Y+  R      G  CGIC  E+  GDPIR LPC HFYH  CID WL +S  CP+C+G A  ++ S+
Sbjct:   76 YDPGRDGSEEEGPECGICFLEFACGDPIRRLPCQHFYHLGCIDEWLTKSFTCPYCRGPAGAEATSA 141
[Close]
BLAST of mRNA_P-wetherbeei_contig7805.1.1 vs. uniprot
Match: A0A7N2MET5_QUELO (RING-type domain-containing protein n=2 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2MET5_QUELO)

HSP 1 Score: 75.9 bits (185), Expect = 5.540e-13
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 2 
Query: 1235 GRLCGICLAEYEMGDPIRTLPCCHFYHQPCIDRWLRR-SGLCPFCKG 1372
            G  C ICLAEYE G+ IR LPCCH YH PCID+WL+   G+CP C+G
Sbjct:   58 GAQCYICLAEYEEGETIRVLPCCHEYHMPCIDKWLKEIHGVCPICRG 104
[Close]
BLAST of mRNA_P-wetherbeei_contig7805.1.1 vs. uniprot
Match: A0A7N2N794_QUELO (RING-type domain-containing protein n=3 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2N794_QUELO)

HSP 1 Score: 77.0 bits (188), Expect = 1.400e-12
Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = 2 
Query: 1235 GRLCGICLAEYEMGDPIRTLPCCHFYHQPCIDRWLRR-SGLCPFCKG 1372
            G  C ICLAEYE G+ IR LPCCH YH PCID+WL+   G+CP CKG
Sbjct:  134 GAQCYICLAEYEEGETIRVLPCCHEYHMPCIDKWLKEIHGVCPICKG 180
[Close]
BLAST of mRNA_P-wetherbeei_contig7805.1.1 vs. uniprot
Match: A0A4X1V7V4_PIG (RING-type domain-containing protein n=5 Tax=Suidae TaxID=9821 RepID=A0A4X1V7V4_PIG)

HSP 1 Score: 72.4 bits (176), Expect = 1.770e-11
Identity = 29/52 (55.77%), Postives = 34/52 (65.38%), Query Frame = 2 
Query: 1244 CGICLAEYEMGDPIRTLPCCHFYHQPCIDRWLRRSGLCPFCKGSAKTKSASS 1399
            C IC  ++  GDPIR+LPC HFYH  CID WL RS  CP+C+G A     SS
Sbjct:   86 CAICTLDFVCGDPIRSLPCKHFYHLGCIDEWLTRSFTCPYCRGPADGPQPSS 137
[Close]
BLAST of mRNA_P-wetherbeei_contig7805.1.1 vs. uniprot
Match: UPI001FD93394 (RING finger protein 11-like n=1 Tax=Phacochoerus africanus TaxID=41426 RepID=UPI001FD93394)

HSP 1 Score: 71.6 bits (174), Expect = 2.500e-11
Identity = 29/52 (55.77%), Postives = 34/52 (65.38%), Query Frame = 2 
Query: 1244 CGICLAEYEMGDPIRTLPCCHFYHQPCIDRWLRRSGLCPFCKGSAKTKSASS 1399
            C IC  ++  GDPIR+LPC HFYH  CID WL RS  CP+C+G A     SS
Sbjct:   75 CAICTLDFVCGDPIRSLPCKHFYHLGCIDGWLTRSFTCPYCRGPADGPQPSS 126
[Close]
BLAST of mRNA_P-wetherbeei_contig7805.1.1 vs. uniprot
Match: UPI001247F23B (serine/threonine-protein phosphatase 7 long form homolog n=1 Tax=Quercus lobata TaxID=97700 RepID=UPI001247F23B)

HSP 1 Score: 77.0 bits (188), Expect = 4.980e-11
Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = 2 
Query: 1235 GRLCGICLAEYEMGDPIRTLPCCHFYHQPCIDRWLRR-SGLCPFCKG 1372
            G  C ICLAEYE G+ IR LPCCH YH PCID+WL+   G+CP CKG
Sbjct:  648 GAQCYICLAEYEEGETIRVLPCCHEYHMPCIDKWLKEIHGVCPICKG 694
[Close]
BLAST of mRNA_P-wetherbeei_contig7805.1.1 vs. uniprot
Match: A0A7N2LEM4_QUELO (RING-type domain-containing protein n=3 Tax=Fagaceae TaxID=3503 RepID=A0A7N2LEM4_QUELO)

HSP 1 Score: 75.9 bits (185), Expect = 8.250e-11
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 2 
Query: 1235 GRLCGICLAEYEMGDPIRTLPCCHFYHQPCIDRWLRR-SGLCPFCKG 1372
            G  C ICLAEYE G+ IR LPCCH YH PCID+WL+   G+CP C+G
Sbjct:  453 GAQCYICLAEYEEGETIRVLPCCHEYHMPCIDKWLKEIHGVCPICRG 499
[Close]
BLAST of mRNA_P-wetherbeei_contig7805.1.1 vs. uniprot
Match: UPI0012452ECF (serine/threonine-protein phosphatase 7 long form homolog n=1 Tax=Quercus lobata TaxID=97700 RepID=UPI0012452ECF)

HSP 1 Score: 75.9 bits (185), Expect = 1.350e-10
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 2 
Query: 1235 GRLCGICLAEYEMGDPIRTLPCCHFYHQPCIDRWLRR-SGLCPFCKG 1372
            G  C ICLAEYE G+ IR LPCCH YH PCID+WL+   G+CP C+G
Sbjct:  868 GAQCYICLAEYEEGETIRVLPCCHEYHMPCIDKWLKEIHGVCPICRG 914
[Close]
BLAST of mRNA_P-wetherbeei_contig7805.1.1 vs. uniprot
Match: A0A4Y7JBP0_PAPSO (RING-type domain-containing protein n=2 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7JBP0_PAPSO)

HSP 1 Score: 68.6 bits (166), Expect = 2.030e-10
Identity = 28/77 (36.36%), Postives = 43/77 (55.84%), Query Frame = 2 
Query: 1160 ASSVGGGXXXCGSGYEEQRPAVHYGGRLCGICLAEYEMGDPIRTLPCCHFYHQPCIDRWLRRSGLCPFCKGSAKTKS 1390
            A  VG G     +G EE R  + +   +C ICL +Y   + ++ LPC HF+H  C+D+WL+++  CP CK   +  S
Sbjct:   28 AQGVGEGGGTLAAGTEEAR-IISWKDAVCSICLGKYADNEELKELPCAHFFHVDCVDKWLKKNDSCPLCKHGIRENS 103
[Close]
BLAST of mRNA_P-wetherbeei_contig7805.1.1 vs. uniprot
Match: A0A8C3YGL3_9CETA (RING-type domain-containing protein n=1 Tax=Catagonus wagneri TaxID=51154 RepID=A0A8C3YGL3_9CETA)

HSP 1 Score: 67.8 bits (164), Expect = 2.170e-10
Identity = 28/52 (53.85%), Postives = 33/52 (63.46%), Query Frame = 2 
Query: 1244 CGICLAEYEMGDPIRTLPCCHFYHQPCIDRWLRRSGLCPFCKGSAKTKSASS 1399
            C IC+ ++  GDPIR+LPC HFYH  CID WL RS  CP C+  A     SS
Sbjct:   43 CAICMLDFVCGDPIRSLPCKHFYHLGCIDEWLIRSFTCPCCRRPADGPKPSS 94
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7805.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8C8YT38_PROSS2.640e-1348.48RING-type domain-containing protein n=1 Tax=Prolem... [more]
A0A7N2MET5_QUELO5.540e-1363.83RING-type domain-containing protein n=2 Tax=Quercu... [more]
A0A7N2N794_QUELO1.400e-1265.96RING-type domain-containing protein n=3 Tax=Quercu... [more]
A0A4X1V7V4_PIG1.770e-1155.77RING-type domain-containing protein n=5 Tax=Suidae... [more]
UPI001FD933942.500e-1155.77RING finger protein 11-like n=1 Tax=Phacochoerus a... [more]
UPI001247F23B4.980e-1165.96serine/threonine-protein phosphatase 7 long form h... [more]
A0A7N2LEM4_QUELO8.250e-1163.83RING-type domain-containing protein n=3 Tax=Fagace... [more]
UPI0012452ECF1.350e-1063.83serine/threonine-protein phosphatase 7 long form h... [more]
A0A4Y7JBP0_PAPSO2.030e-1036.36RING-type domain-containing protein n=2 Tax=Papave... [more]
A0A8C3YGL3_9CETA2.170e-1053.85RING-type domain-containing protein n=1 Tax=Catago... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7805contigP-wetherbeei_contig7805:250..2027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4558.Sb01g039740.1
PFAMszf-RING_2
Model size1778
Max annot lvl35493|Streptophyta
KEGG koko:K16283
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0001101,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009414,GO:0009415,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009737,GO:0009787,GO:0009789,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010035,GO:0010498,GO:0010646,GO:0010647,GO:0012505,GO:0016020,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0023051,GO:0023056,GO:0030163,GO:0031984,GO:0032446,GO:0033993,GO:0036211,GO:0042175,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051603,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0097305,GO:0098827,GO:0140096,GO:1901419,GO:1901421,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1905957,GO:1905959
Exons1
Evalue1.69e-11
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota,37NQE@33090|Viridiplantae,3GFRY@35493|Streptophyta,3KRAT@4447|Liliopsida,3I7ZS@38820|Poales
EC2.3.2.27
DescriptionRING-like zinc finger
Cds size1500
COG categoryO
BRITEko00000,ko01000,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187001.767158-UTR-P-wetherbeei_contig7805:249..3851683187001.767158-UTR-P-wetherbeei_contig7805:249..385Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7805 250..385 +
1683187001.7914004-UTR-P-wetherbeei_contig7805:1885..20271683187001.7914004-UTR-P-wetherbeei_contig7805:1885..2027Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7805 1886..2027 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187001.78147-CDS-P-wetherbeei_contig7805:385..18851683187001.78147-CDS-P-wetherbeei_contig7805:385..1885Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7805 386..1885 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7805.1.1prot_P-wetherbeei_contig7805.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7805 386..1885 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7805.1.1

>prot_P-wetherbeei_contig7805.1.1 ID=prot_P-wetherbeei_contig7805.1.1|Name=mRNA_P-wetherbeei_contig7805.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=500bp
MEANCTGLECGDCLDEPGCSWCGGLDADGTGAAIGCLSSEQRTTCLPVTA
WSVDRCLFACSSDAPVNLTGPIGAITFGSPGDVLVAAAPGLTCYWQLLWP
AEAGGNVGRVEFTTLDLASGQMLEAILDDDGADPRTILSLTNADNNVGDA
AGGVLKQATARGVPLLVKFSSPSASGSAAMTTTNVSGIVSSGSGSTSSSE
GGGFSFVYTKVVPTQEGSLLSGPVVNAVIGALAVGILLAIWTVRAVSQRR
RQRAFVAAVAAHSLARAGFGPHGGSTGGGSGGGPGSGSPGGGSGGGDDDH
PGSWTALRKSELDALPVTKYGYGAILEPAAWLRRPGPQVAPASSVGGGGG
GCGSGYEEQRPAVHYGGRLCGICLAEYEMGDPIRTLPCCHFYHQPCIDRW
LRRSGLCPFCKGSAKTKSASSPPEGARSGLAAAAEAAAAAAGGGNAEAEA
TVAGAATAALAATAAATLMAVATREAAATGGAAGGAAAGLNGDAEAGSE*
back to top

mRNA from alignment at P-wetherbeei_contig7805:250..2027+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7805.1.1 ID=mRNA_P-wetherbeei_contig7805.1.1|Name=mRNA_P-wetherbeei_contig7805.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1778bp|location=Sequence derived from alignment at P-wetherbeei_contig7805:250..2027+ (Phaeothamnion wetherbeei SAG_119_79)
TTGTGCCTCGCACCTCTGCCTGGCAAATGCGCTGAGAGCACTCGCGCTGC
CTTTGGCCAATCGTCCCGAAGACTCCTTTCTGGAAGGAATTTACTCGTAG
AAAGGTTGATACGGGAAACCAACGAAAAGTAACACGATGGAGGCCAACTG
CACTGGCCTGGAGTGCGGCGACTGCCTCGACGAGCCTGGATGTTCGTGGT
GCGGCGGCCTAGATGCCGACGGCACCGGCGCAGCCATCGGGTGCTTATCG
TCCGAACAACGAACGACGTGCCTTCCCGTAACAGCATGGAGCGTCGACCG
CTGTCTCTTTGCCTGCTCGTCTGATGCTCCTGTCAATCTGACGGGGCCGA
TCGGCGCCATCACGTTTGGGAGTCCCGGGGACGTTCTCGTGGCAGCAGCG
CCGGGTCTGACCTGCTACTGGCAACTCCTCTGGCCTGCTGAAGCGGGCGG
CAACGTGGGGCGCGTCGAGTTCACGACGCTGGACCTCGCTAGCGGCCAAA
TGCTCGAGGCGATCCTCGACGACGATGGCGCCGACCCGCGGACTATCCTG
TCGCTCACGAACGCCGACAACAACGTCGGCGATGCCGCCGGTGGCGTCTT
GAAGCAGGCGACCGCCCGAGGCGTGCCGCTGCTCGTAAAGTTCTCCTCGC
CGTCGGCCTCCGGTTCAGCGGCGATGACGACGACGAACGTCAGCGGCATC
GTCAGCAGCGGCAGCGGCAGCACTAGCAGTAGCGAAGGCGGCGGGTTCTC
CTTCGTCTACACTAAGGTCGTGCCGACGCAGGAGGGGTCGCTGCTGTCTG
GGCCGGTCGTCAATGCCGTCATAGGTGCACTCGCCGTCGGCATCCTCCTC
GCCATATGGACGGTCCGTGCCGTGTCGCAGCGCCGCCGGCAGCGGGCGTT
CGTGGCCGCCGTGGCGGCGCATTCCCTCGCCCGGGCCGGCTTCGGGCCGC
ACGGCGGCTCCACGGGCGGCGGCAGTGGCGGAGGTCCTGGCAGCGGCAGT
CCTGGCGGCGGCAGCGGCGGCGGTGACGACGATCACCCGGGATCCTGGAC
GGCGCTGCGCAAGTCGGAGCTGGACGCGTTGCCGGTGACGAAGTACGGCT
ACGGAGCCATCCTGGAACCAGCGGCTTGGTTGCGACGGCCTGGGCCGCAG
GTGGCGCCAGCCAGTTCCGTCGGAGGCGGCGGCGGTGGCTGCGGTAGCGG
CTACGAGGAACAGAGGCCTGCCGTCCACTATGGCGGGCGGCTCTGCGGCA
TTTGTCTCGCTGAGTACGAGATGGGAGACCCCATCCGGACGCTACCGTGC
TGCCACTTCTACCACCAGCCGTGCATCGATCGGTGGTTGAGGAGGAGTGG
GCTGTGCCCGTTTTGCAAGGGCAGCGCGAAGACCAAGAGCGCGTCGTCAC
CGCCGGAGGGCGCCAGGAGCGGCTTGGCAGCGGCCGCGGAAGCGGCGGCG
GCAGCGGCTGGTGGTGGAAATGCTGAGGCGGAGGCGACTGTGGCTGGGGC
GGCTACAGCGGCGTTGGCGGCGACGGCGGCGGCGACTTTGATGGCAGTGG
CGACAAGGGAAGCCGCGGCGACAGGCGGAGCAGCGGGAGGTGCGGCAGCT
GGACTAAACGGCGATGCTGAGGCGGGGTCAGAATAGGTGATTAAAATGGC
TCTGGCGTGGCGGAGAAAGAAATGATTGAATAGGCTGTTGATGTGATCAA
CTGGAGTCACACGTGCTTGGCAGCAAGCAAGGCTTTACAGCAAGCGCGCC
GCACAAGTTAATTTCCTCATTTTAACAT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig7805:250..2027+

>mRNA_P-wetherbeei_contig7805.1.1 ID=mRNA_P-wetherbeei_contig7805.1.1|Name=mRNA_P-wetherbeei_contig7805.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1500bp|location=Sequence derived from alignment at P-wetherbeei_contig7805:250..2027+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGCCAACTGCACTGGCCTGGAGTGCGGCGACTGCCTCGACGAGCC
TGGATGTTCGTGGTGCGGCGGCCTAGATGCCGACGGCACCGGCGCAGCCA
TCGGGTGCTTATCGTCCGAACAACGAACGACGTGCCTTCCCGTAACAGCA
TGGAGCGTCGACCGCTGTCTCTTTGCCTGCTCGTCTGATGCTCCTGTCAA
TCTGACGGGGCCGATCGGCGCCATCACGTTTGGGAGTCCCGGGGACGTTC
TCGTGGCAGCAGCGCCGGGTCTGACCTGCTACTGGCAACTCCTCTGGCCT
GCTGAAGCGGGCGGCAACGTGGGGCGCGTCGAGTTCACGACGCTGGACCT
CGCTAGCGGCCAAATGCTCGAGGCGATCCTCGACGACGATGGCGCCGACC
CGCGGACTATCCTGTCGCTCACGAACGCCGACAACAACGTCGGCGATGCC
GCCGGTGGCGTCTTGAAGCAGGCGACCGCCCGAGGCGTGCCGCTGCTCGT
AAAGTTCTCCTCGCCGTCGGCCTCCGGTTCAGCGGCGATGACGACGACGA
ACGTCAGCGGCATCGTCAGCAGCGGCAGCGGCAGCACTAGCAGTAGCGAA
GGCGGCGGGTTCTCCTTCGTCTACACTAAGGTCGTGCCGACGCAGGAGGG
GTCGCTGCTGTCTGGGCCGGTCGTCAATGCCGTCATAGGTGCACTCGCCG
TCGGCATCCTCCTCGCCATATGGACGGTCCGTGCCGTGTCGCAGCGCCGC
CGGCAGCGGGCGTTCGTGGCCGCCGTGGCGGCGCATTCCCTCGCCCGGGC
CGGCTTCGGGCCGCACGGCGGCTCCACGGGCGGCGGCAGTGGCGGAGGTC
CTGGCAGCGGCAGTCCTGGCGGCGGCAGCGGCGGCGGTGACGACGATCAC
CCGGGATCCTGGACGGCGCTGCGCAAGTCGGAGCTGGACGCGTTGCCGGT
GACGAAGTACGGCTACGGAGCCATCCTGGAACCAGCGGCTTGGTTGCGAC
GGCCTGGGCCGCAGGTGGCGCCAGCCAGTTCCGTCGGAGGCGGCGGCGGT
GGCTGCGGTAGCGGCTACGAGGAACAGAGGCCTGCCGTCCACTATGGCGG
GCGGCTCTGCGGCATTTGTCTCGCTGAGTACGAGATGGGAGACCCCATCC
GGACGCTACCGTGCTGCCACTTCTACCACCAGCCGTGCATCGATCGGTGG
TTGAGGAGGAGTGGGCTGTGCCCGTTTTGCAAGGGCAGCGCGAAGACCAA
GAGCGCGTCGTCACCGCCGGAGGGCGCCAGGAGCGGCTTGGCAGCGGCCG
CGGAAGCGGCGGCGGCAGCGGCTGGTGGTGGAAATGCTGAGGCGGAGGCG
ACTGTGGCTGGGGCGGCTACAGCGGCGTTGGCGGCGACGGCGGCGGCGAC
TTTGATGGCAGTGGCGACAAGGGAAGCCGCGGCGACAGGCGGAGCAGCGG
GAGGTGCGGCAGCTGGACTAAACGGCGATGCTGAGGCGGGGTCAGAATAG
back to top