mRNA_P-wetherbeei_contig7804.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7804.2.1
Unique NamemRNA_P-wetherbeei_contig7804.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7804.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7804contigP-wetherbeei_contig7804:1283..2974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size284
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size153
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187001.6060815-UTR-P-wetherbeei_contig7804:1282..13371683187001.6060815-UTR-P-wetherbeei_contig7804:1282..1337Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7804 1283..1337 -
1683187001.6328485-UTR-P-wetherbeei_contig7804:2898..29741683187001.6328485-UTR-P-wetherbeei_contig7804:2898..2974Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7804 2899..2974 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187001.615713-CDS-P-wetherbeei_contig7804:1337..13591683187001.615713-CDS-P-wetherbeei_contig7804:1337..1359Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7804 1338..1359 -
1683187001.6245728-CDS-P-wetherbeei_contig7804:2767..28981683187001.6245728-CDS-P-wetherbeei_contig7804:2767..2898Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7804 2768..2898 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7804.2.1prot_P-wetherbeei_contig7804.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7804 1338..2898 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7804.2.1

>prot_P-wetherbeei_contig7804.2.1 ID=prot_P-wetherbeei_contig7804.2.1|Name=mRNA_P-wetherbeei_contig7804.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=51bp
MPLLGPLPVPMPVPKRAAAAALTAAFLPSISPPSTAAFHSLPLLKRRSEV
*
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mRNA from alignment at P-wetherbeei_contig7804:1283..2974-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7804.2.1 ID=mRNA_P-wetherbeei_contig7804.2.1|Name=mRNA_P-wetherbeei_contig7804.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1692bp|location=Sequence derived from alignment at P-wetherbeei_contig7804:1283..2974- (Phaeothamnion wetherbeei SAG_119_79)
GCATTGATGCATTTCTCATTCCGCGTAGTCTTCAGCCCCCTGCGACCACC
GGGCCCGCCATCATAAACACCACTACATGCCGCTGCTTGGACCGCTGCCG
GTGCCGATGCCGGTTCCCAAACGTGCCGCGGCCGCTGCACTCACCGCCGC
CTTCCTGCCGTCTATATCACCACCATCCACAGCCGCCTTCCACAGTCTCC
CGCTGCTGCCGCTGCCACCACCACTACCGCTTTCTCCAGTTGACACCACC
GCCGCATCCGCCACCGCTGCCACCGCCTCACCAGCCACCACCACAAGTTC
TTCCTCGCGAACGGCTAAGGCGATAAATGCATAGCGAACGCACCATACTC
GCCCCTGCTCGCTCGCGTTCATCCTCTGTCGTTCTCAAAAGTAGTTCTGG
GAGCCCGGAATGGTGAGGTTGGGGTTAGTGCCAGCGGGCTTGACGCTCCA
CAGGCTGACGTCGAAGAGCACCGTGGCGTCTGGCGGGATGAAGGGCACCT
TGCCCGCCTTGCCGAAGGCCAGTTCTCCCGGCAGAGTGATCTTGCGCCGG
CCCCCGACCTGGTGACGTAGCGCAGCGCAATGCAGTGCAGTGACATGGGC
GACGGAATGGGATATGAAACGTAGTGGGAAAGGAGGAGGGCGTGCGGGCA
GAGGGATGGTTAAAGGATGGTTAAAGCAAGCCGGTAACGATTTCGCGGTG
ATGGAAGGAAGCGGCGGCGGGAACGTTGGAAAATAAAAAGGGTGGTCATG
GCGGTGGCGGCGGCGGCAACAGCAAGGCGGCAGCGTCGCTTGCTGTAGGA
GACCGTTTCAACCCTGCAGAAACGAAAGAACTGCGGTGGCGCTGAGGAAC
CTCTGCGGTTTTTCTGCCCCTCCATTCCCTTCAAAGCTTTAACTCCGTTT
TCGGGCAAAGCTAAACAACAGGGTTAGCAAGAAACTCTAAGATGCGCATA
TCGAGCACCTGCATCCCGTCAATCGCCTCCTCCAGACCACGTGGAATGCT
TCCGAGGCCGCCCTTTGTGCCGAACGTGAAGCCGAATCTGAGGGCGGAGA
GAGGGAAAACTATTGTTGAGCGGCTTCGGCGATCCAGCATCATTAATAAT
GAGGCCGCTGTGCAAATGGGCATTATGACGTTAAGAGATTTGGCGGCAAA
TGGAGTCGAAAGAAAATGTAAGCCTAGCTCAGTCCGGTCAGAGAGCCGAA
AGGAAGAAAACAGTATTCTCTGACTTATCAAGGGCTTTCCTGACGAAATC
CAAGCCTTCATTCGAAAGACTCACGGGCGAGCGGCGAGGCCAGATGACTC
CCGCGTCGACTCCACCTCTAGACCTGCTCCATCCAGAGGTCGTGCCGCGT
CGGAGGACAAGCGAAGGACGGAAGATTGCACTGAGGACCTAACTGACGGA
CGAAGTTGGAACGACCTCGCGGCACTGCCAAAGAGCGACGAACCGCGCTC
CCAGCAAGGCAGAGAGTATCAAATTTTGTTTCCTACTCCGTAAACTTCCT
ACAACGAGGAACCAGAAATACAAGAGACGCACCGTTGTAATACAGCGAAT
AGTGAATCGCCACGCGGTCTCCGAACTTCGGGCTGGCGCCCTTCCCGACG
GTCATCTCCTGGTAGGAAGCGCCGCTCGGAAGTTTGACGATGGGGGCGTT
CTTGGTGCGTCGTACGTTCGCAGCGGACGCCGGCTCCAGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7804:1283..2974-

>mRNA_P-wetherbeei_contig7804.2.1 ID=mRNA_P-wetherbeei_contig7804.2.1|Name=mRNA_P-wetherbeei_contig7804.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=153bp|location=Sequence derived from alignment at P-wetherbeei_contig7804:1283..2974- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCTGCTTGGACCGCTGCCGGTGCCGATGCCGGTTCCCAAACGTGC
CGCGGCCGCTGCACTCACCGCCGCCTTCCTGCCGTCTATATCACCACCAT
CCACAGCCGCCTTCCACAGTCTCCCGCTGCTGAAGCGCCGCTCGGAAGTT
TGA
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