mRNA_P-wetherbeei_contig7800.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7800.3.1
Unique NamemRNA_P-wetherbeei_contig7800.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7800.3.1 vs. uniprot
Match: A0A3C0TTB1_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TTB1_9PROT)

HSP 1 Score: 120 bits (302), Expect = 1.240e-33
Identity = 55/82 (67.07%), Postives = 63/82 (76.83%), Query Frame = 1 
Query:   94 VGLDAPSVERLLGKPDLSRKEPFAEVWQYTHGDCVLFLFIYAEAGGAGRVSHAETSARDGGKDPEPGQCIGAILTRNAATPG 339
            +G ++ +VERLLGKPDLSR+EP AE WQYTH DCVLFLF+Y    G   VSHAE SARDGGKDP+P QCI A+  RNAA  G
Sbjct:    1 MGQNSRTVERLLGKPDLSRQEPSAEFWQYTHADCVLFLFLYPSGNGGSEVSHAEISARDGGKDPDPHQCISALAARNAAAAG 82
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BLAST of mRNA_P-wetherbeei_contig7800.3.1 vs. uniprot
Match: A0A2E1EI07_9HYPH (Uncharacterized protein n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2E1EI07_9HYPH)

HSP 1 Score: 68.2 bits (165), Expect = 2.290e-12
Identity = 32/86 (37.21%), Postives = 47/86 (54.65%), Query Frame = 1 
Query:   64 GEGSYTANDLVGLDAPSVERLLGKPDLSRKEPFAEVWQYTHGDCVLFLFIYAEAGGAGRVSHAETSARDGGKDPEPGQCIGAILTR 321
            G+G  T   LVG    ++   LG+PD  R EP AE+WQYT GDC LF++ Y   GGA    + +    +GG   +   C+ A++ +
Sbjct:   35 GKGPLTPAALVGAAPSAISARLGEPDFRRAEPHAEIWQYTGGDCSLFVYFYETDGGALGSRYVDARKLEGGAASKDA-CLAAVMAK 119
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7800.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A3C0TTB1_9PROT1.240e-3367.07Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A2E1EI07_9HYPH2.290e-1237.21Uncharacterized protein n=2 Tax=Hyphomicrobiales T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7800contigP-wetherbeei_contig7800:2284..2625 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog570952.ATVH01000013_gene2993
Model size342
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue2e-09
EggNOG OGs2EHHR@1|root,33B9P@2|Bacteria,1NGHW@1224|Proteobacteria,2UJVS@28211|Alphaproteobacteria,2JUIH@204441|Rhodospirillales
Cds size342
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187001.5097384-CDS-P-wetherbeei_contig7800:2283..26251683187001.5097384-CDS-P-wetherbeei_contig7800:2283..2625Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7800 2284..2625 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7800.3.1prot_P-wetherbeei_contig7800.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7800 2284..2625 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7800.3.1

>prot_P-wetherbeei_contig7800.3.1 ID=prot_P-wetherbeei_contig7800.3.1|Name=mRNA_P-wetherbeei_contig7800.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=114bp
EIPKALAALPPQGKPKTPRTQGEGSYTANDLVGLDAPSVERLLGKPDLSR
KEPFAEVWQYTHGDCVLFLFIYAEAGGAGRVSHAETSARDGGKDPEPGQC
IGAILTRNAATPG*
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mRNA from alignment at P-wetherbeei_contig7800:2284..2625-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7800.3.1 ID=mRNA_P-wetherbeei_contig7800.3.1|Name=mRNA_P-wetherbeei_contig7800.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig7800:2284..2625- (Phaeothamnion wetherbeei SAG_119_79)
GAAATCCCAAAAGCCCTGGCCGCATTGCCGCCCCAAGGAAAGCCAAAGAC
ACCACGCACGCAGGGCGAGGGGAGCTATACGGCAAATGATCTGGTTGGCC
TGGATGCGCCATCGGTTGAACGGCTGCTGGGCAAACCGGACCTCAGCCGC
AAGGAACCCTTTGCCGAAGTCTGGCAATATACCCACGGAGACTGCGTGCT
GTTCCTGTTCATCTATGCCGAGGCGGGGGGAGCCGGACGGGTGTCCCATG
CCGAAACCAGCGCGCGCGATGGCGGCAAGGATCCCGAGCCGGGGCAATGC
ATCGGGGCGATCCTGACCCGCAACGCCGCAACGCCGGGATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7800:2284..2625-

>mRNA_P-wetherbeei_contig7800.3.1 ID=mRNA_P-wetherbeei_contig7800.3.1|Name=mRNA_P-wetherbeei_contig7800.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig7800:2284..2625- (Phaeothamnion wetherbeei SAG_119_79)
GAAATCCCAAAAGCCCTGGCCGCATTGCCGCCCCAAGGAAAGCCAAAGAC
ACCACGCACGCAGGGCGAGGGGAGCTATACGGCAAATGATCTGGTTGGCC
TGGATGCGCCATCGGTTGAACGGCTGCTGGGCAAACCGGACCTCAGCCGC
AAGGAACCCTTTGCCGAAGTCTGGCAATATACCCACGGAGACTGCGTGCT
GTTCCTGTTCATCTATGCCGAGGCGGGGGGAGCCGGACGGGTGTCCCATG
CCGAAACCAGCGCGCGCGATGGCGGCAAGGATCCCGAGCCGGGGCAATGC
ATCGGGGCGATCCTGACCCGCAACGCCGCAACGCCGGGATAA
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