mRNA_P-wetherbeei_contig78.8.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig78.8.1
Unique NamemRNA_P-wetherbeei_contig78.8.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig78.8.1 vs. uniprot
Match: A0A836CFV7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFV7_9STRA)

HSP 1 Score: 121 bits (303), Expect = 6.940e-33
Identity = 71/108 (65.74%), Postives = 86/108 (79.63%), Query Frame = 1
Query:    7 TALAMDLDQNTIVGIAAGVGGLALGIGLVAFTEQQGERTAARGDLSENVAAKLSAKLLEDADMDETDVESVTDRMRKALMADQTAEQEKEMQDK-IAAKKTEEEDDGW 327
            TA+AM++DQNTI+GIAAGVGGLALGIGLVAFTEQQG +TA RG + E +A KL AKLLED +++E DV SVTDRMR AL  D+T E+  E+  K +AA+  E EDDGW
Sbjct:   52 TAIAMEMDQNTIIGIAAGVGGLALGIGLVAFTEQQGVKTAERG-IDEGMANKLQAKLLEDFELEENDVTSVTDRMRAALKQDKTEEELAELAAKQLAARSKEREDDGW 158          
BLAST of mRNA_P-wetherbeei_contig78.8.1 vs. uniprot
Match: A0A6S9FQI8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9FQI8_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 5.350e-16
Identity = 49/109 (44.95%), Postives = 73/109 (66.97%), Query Frame = 1
Query:    7 TALAMDLDQNTIVGIAAGVGGLALGIGLVAFTEQQGERTAARGDLSENVAAKLSAKLLEDADMDE-TDVESVTDRMRKALMADQTAEQEK-EMQDKIAAKKTEEEDDGW 327
            T+L M +DQN I+G A GVGG A GIGL+AFTE QGERT  RG LSE+++ +++  LLED ++D  +D+ S+T ++  AL    + + +  EM ++   K  ++ DDGW
Sbjct:   50 TSLCM-VDQNVIMGTAIGVGGFAFGIGLIAFTEAQGERTKERGGLSESMSTRIAGALLEDVEVDSVSDLGSLTSQLEAALKETGSKDLDNLEMTEEEKQKMIDDADDGW 157          
BLAST of mRNA_P-wetherbeei_contig78.8.1 vs. uniprot
Match: A0A1Z5KBT4_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KBT4_FISSO)

HSP 1 Score: 75.5 bits (184), Expect = 3.930e-15
Identity = 48/111 (43.24%), Postives = 68/111 (61.26%), Query Frame = 1
Query:    1 RKTALAMDLDQNTIVGIAAGVGGLALGIGLVAFTEQQGERTAARGD-LSENVAAKLSAKLLEDADMDETD-VESVTDRMRKALMADQTAEQEKEMQDKIAAKKTEEEDDGW 327
            R T     +DQN ++G A GVGGLA GIGLVAFTEQQGER   RG  LSE+++ +++  LLED ++   D + S+T ++  AL       +  E+ ++   K  E+ DDGW
Sbjct:   29 RSTTSLQMVDQNVLLGAAVGVGGLAFGIGLVAFTEQQGERAKERGGGLSESMSTRIAGGLLEDVEVSSVDDLGSLTAQLENALRQTGKTGESFEVSEEAKRKALEDADDGW 139          
BLAST of mRNA_P-wetherbeei_contig78.8.1 vs. uniprot
Match: B7FYG2_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FYG2_PHATC)

HSP 1 Score: 70.5 bits (171), Expect = 4.380e-13
Identity = 48/109 (44.04%), Postives = 68/109 (62.39%), Query Frame = 1
Query:   10 ALAMDLDQNTIVGIAAGVGGLALGIGLVAFTEQQGERTAARGD-LSENVAAKLSAKLLEDADMDET-DVESVTDRMRKALMADQTAEQEK-EMQDKIAAKKTEEEDDGW 327
            AL ++LDQ  + GI  GV GLA G+GLVAFTE QGER   RG  LSE ++ +++  LLED ++    D+ S+T ++ KAL     A+ E  EM ++   +  +E DDGW
Sbjct:   41 ALNLELDQQVLQGIGIGVAGLAAGVGLVAFTEAQGERAKERGGGLSEGMSTRITGGLLEDVEVSSVEDLGSLTSQLEKALRESGGAKDEVFEMTEEEKKRIQDEADDGW 149          
BLAST of mRNA_P-wetherbeei_contig78.8.1 vs. uniprot
Match: A0A7R9ZNS2_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZNS2_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.890e-12
Identity = 45/104 (43.27%), Postives = 65/104 (62.50%), Query Frame = 1
Query:   25 LDQNTIVGIAAGVGGLALGIGLVAFTEQQGERTAARGD-LSENVAAKLSAKLLEDADMDET-DVESVTDRMRKALMADQ-TAEQEKEMQDKIAAKKTEEEDDGW 327
            +D   ++G   G+ GL  GIGLVAFTEQQGER   RG  LS+N+  +LS  L+ED ++    D+ S+TD++  AL A   T E++ +M ++   +  EE DDGW
Sbjct:   50 IDDGYLMGAGIGIAGLVAGIGLVAFTEQQGERAKERGSGLSDNMNTQLSGMLMEDVEVSSVADIGSLTDQLEAALKASGGTDEKDLKMTEEEKKRIAEEADDGW 153          
BLAST of mRNA_P-wetherbeei_contig78.8.1 vs. uniprot
Match: A0A6U0FCW0_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A6U0FCW0_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.220e-12
Identity = 48/110 (43.64%), Postives = 70/110 (63.64%), Query Frame = 1
Query:    7 TALAMDLDQNTIVGIAAGVGGLALGIGLVAFTEQQGERTAARGD-LSENVAAKLSAKLLEDADMDE-TDVESVTDRMRKALMADQTAEQEK-EMQDKIAAKKTEEEDDGW 327
            T+L M +DQN I G A G+GG A+GIGLVAF E QGER   RG  +S++++ +++  LLED ++D  +D+ S+T ++  AL      E +  EM ++   K  EE DDGW
Sbjct:   70 TSLKM-VDQNIIYGAAIGIGGFAVGIGLVAFAEAQGERAKERGGGISDSMSTRIAGGLLEDVEVDSVSDLGSLTSQLEAALKETGAKEADNLEMTEEEKKKIAEEADDGW 178          
BLAST of mRNA_P-wetherbeei_contig78.8.1 vs. uniprot
Match: A0A7S1GJC5_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GJC5_CYCTE)

HSP 1 Score: 68.2 bits (165), Expect = 6.270e-12
Identity = 46/104 (44.23%), Postives = 67/104 (64.42%), Query Frame = 1
Query:   25 LDQNTIVGIAAGVGGLALGIGLVAFTEQQGERTAARGD-LSENVAAKLSAKLLEDADMDE-TDVESVTDRMRKALMADQTA-EQEKEMQDKIAAKKTEEEDDGW 327
            +DQ+ I G A  VGGLA+GIGLVAFTE QGER   RG  +SE +A +++ +L+ED ++   +D+ S+T ++  AL     A E E +M ++   +  EE DDGW
Sbjct:   76 VDQSVIEGAAIAVGGLAVGIGLVAFTEAQGERARERGSGISEGMATRIAGQLMEDVEVSSVSDLGSLTSQLEAALKETGGASETELKMSEEDKERIAEEADDGW 179          
BLAST of mRNA_P-wetherbeei_contig78.8.1 vs. uniprot
Match: A0A7S1TQH8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQH8_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 6.800e-12
Identity = 49/105 (46.67%), Postives = 68/105 (64.76%), Query Frame = 1
Query:   25 LDQNTIVGIAAGVGGLALGIGLVAFTEQQGERTAARGDLSENVAAKLSAKLLEDADMDET-DVESVTDRMRKALMA--DQTAEQE-KEMQDKIAAKKTEEEDDGW 327
            +D + ++G    +G +A G+GL+AFTEQQGERT+ RG LS  +  +LSAKLLED + DE+ ++  +T+RM  AL A  D T E + KE+       K E EDDGW
Sbjct:   37 MDNSILIGGTVLLGTIA-GVGLIAFTEQQGERTSQRGGLSGEMTDRLSAKLLEDYESDESGEISQLTERMEAALRAQGDGTLETDGKEV-------KVEVEDDGW 133          
BLAST of mRNA_P-wetherbeei_contig78.8.1 vs. uniprot
Match: A0A8J6C9X7_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C9X7_DIALT)

HSP 1 Score: 61.2 bits (147), Expect = 1.390e-9
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 1
Query:   25 LDQNTIVGIAAGVGGLALGIGLVAFTEQQGERTAARGDLSENVAAKLSAKLLEDADMDETD-VESVTDRMRKAL 243
            +DQN +VG A G+ G   G+ LVAFTEQ GERT ARG LS   AAK + K +ED ++D++  ++ +  +M  AL
Sbjct:   43 IDQNILVGGAIGLVGTLGGVALVAFTEQAGERTNARGALSSEQAAKFAGKFMEDEEVDQSGTIDDIVAKMEAAL 116          
BLAST of mRNA_P-wetherbeei_contig78.8.1 vs. uniprot
Match: A0A7S4ECZ2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4ECZ2_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 9.860e-9
Identity = 42/103 (40.78%), Postives = 59/103 (57.28%), Query Frame = 1
Query:   25 LDQNTIVGIAAGVGGLALGIGLVAFTEQQGERTAARGD--LSENVAAKLSAKLLEDADMDETDVESVTDRMRKALMADQTAEQEKEMQDKIAAKKTEEEDDGW 327
            LD   I G AA VGGLA+G+G+  F+EQQ E+   RG   +SE   AK+SA  +ED  + +T ++    RM  AL A   A+ E  +++K+  K     DDGW
Sbjct:   55 LDAAVIQGGAAAVGGLAVGLGMAWFSEQQVEQGEQRGSDAVSEATRAKMSAMFMEDEVLPDTTLDDTVSRMEAALAA---AKGEAAVEEKVEEKPASSIDDGW 154          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig78.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A836CFV7_9STRA6.940e-3365.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6S9FQI8_9STRA5.350e-1644.95Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1Z5KBT4_FISSO3.930e-1543.24Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
B7FYG2_PHATC4.380e-1344.04Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7R9ZNS2_9STRA1.890e-1243.27Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A6U0FCW0_9STRA2.220e-1243.64Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S1GJC5_CYCTE6.270e-1244.23Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S1TQH8_9STRA6.800e-1246.67Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A8J6C9X7_DIALT1.390e-947.30Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A7S4ECZ2_9STRA9.860e-940.78Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig78contigP-wetherbeei_contig78:8120..9024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0TE04
Model size330
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categorysignal anchor
Exons2
Evalue3.78e-13
EggNOG OGs2E97Y@1|root,2SFM6@2759|Eukaryota,2XD55@2836|Bacillariophyta
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-20_003940.1
Cds size312
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187001.2062366-UTR-P-wetherbeei_contig78:8119..81371683187001.2062366-UTR-P-wetherbeei_contig78:8119..8137Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig78 8120..8137 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187001.217663-CDS-P-wetherbeei_contig78:8137..82691683187001.217663-CDS-P-wetherbeei_contig78:8137..8269Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig78 8138..8269 +
1683187001.2286522-CDS-P-wetherbeei_contig78:8844..90241683187001.2286522-CDS-P-wetherbeei_contig78:8844..9024Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig78 8845..9024 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig78.8.1prot_P-wetherbeei_contig78.8.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig78 8138..9024 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig78.8.1

>prot_P-wetherbeei_contig78.8.1 ID=prot_P-wetherbeei_contig78.8.1|Name=mRNA_P-wetherbeei_contig78.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=104bp
MDLDQNTIVGIAAGVGGLALGIGLVAFTEQQGERTAARGDLSENVAAKLS
AKLLEDADMDETDVESVTDRMRKALMADQTAEQEKEMQDKIAAKKTEEED
DGW*
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mRNA from alignment at P-wetherbeei_contig78:8120..9024+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig78.8.1 ID=mRNA_P-wetherbeei_contig78.8.1|Name=mRNA_P-wetherbeei_contig78.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=905bp|location=Sequence derived from alignment at P-wetherbeei_contig78:8120..9024+ (Phaeothamnion wetherbeei SAG_119_79)
CGAAAGACTGCCCTGGCGATGGACCTGGACCAAAATACCATAGTTGGCAT CGCTGCGGGCGTAGGAGGGCTAGCATTAGGCATCGGCCTTGTCGCGTTTA CGGAGCAGCAAGGCGAGCGCACGGCAGCACGCGGAGACCTTAGTGAGAAC GTGAGTCAGAGCAAGTGTTTAGAAACGTTCCTTTGGAGGAGAGACCATTT TGACGGCGGGACAAAGGAGGATGCGGAAAGAATGAGAAGGACGATTTTGC GGCGTCTTCTGTGCTTTTACGACATTTGATGAAAGCTTTTAGGTGATGCG TTAGTTGACTTCGGGTCTTTCAGAGGCGGCTTGGGCGTTTTCATCGGGTT CTGCGTCGGTGTGCATGTCGAAAGAAAATCCAGGGCCGGACGGGCGGCGG CAACGGCGATGGTCCATACCACTTCGGTTACGGAGCGTTTCCAATGGCGT TCGCCAGTGTGGAATCCTTGTAGGCGAGGTTATGAGCCCTGTTTTCATGA ATGACTCGGTGAAGGCGATAAGTTGTGTCAAATCTTTTCTACCGCGTTGT TTCATTGGAGACGTATCTATCCCCCTTGGGGGGGAATCTATGCCTCGCCA TTTAGATCAAATTTGCAATGGAGTTAGCTGAACAACCTTCGCTTCGTGTT TCCTCCACCTCCATCGCCCCCCCTTTGCAATTGCTCTTTCGGCTTGGAAC GGCCCCGGCGGAAAACCGAAAATAGGTCGCCGCCAAGCTCTCGGCCAAGC TTTTGGAAGATGCAGACATGGACGAGACGGACGTCGAATCCGTCACGGAC CGTATGCGGAAGGCGCTCATGGCTGACCAGACGGCGGAGCAGGAGAAAGA GATGCAGGACAAGATTGCTGCCAAGAAGACGGAGGAAGAAGACGATGGGT GGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig78:8120..9024+

>mRNA_P-wetherbeei_contig78.8.1 ID=mRNA_P-wetherbeei_contig78.8.1|Name=mRNA_P-wetherbeei_contig78.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=312bp|location=Sequence derived from alignment at P-wetherbeei_contig78:8120..9024+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACCTGGACCAAAATACCATAGTTGGCATCGCTGCGGGCGTAGGAGG
GCTAGCATTAGGCATCGGCCTTGTCGCGTTTACGGAGCAGCAAGGCGAGC
GCACGGCAGCACGCGGAGACCTTAGTGAGAACGTCGCCGCCAAGCTCTCG
GCCAAGCTTTTGGAAGATGCAGACATGGACGAGACGGACGTCGAATCCGT
CACGGACCGTATGCGGAAGGCGCTCATGGCTGACCAGACGGCGGAGCAGG
AGAAAGAGATGCAGGACAAGATTGCTGCCAAGAAGACGGAGGAAGAAGAC
GATGGGTGGTGA
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