mRNA_P-wetherbeei_contig78.7.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig78.7.1
Unique NamemRNA_P-wetherbeei_contig78.7.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig78.7.1 vs. uniprot
Match: A0A835ZQ88_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ88_9STRA)

HSP 1 Score: 234 bits (596), Expect = 7.110e-76
Identity = 113/153 (73.86%), Postives = 127/153 (83.01%), Query Frame = 1
Query:    1 GVDVETKTVFDPLKFSKDEGALFRYREVELKHGRVAMLATLGYVTAEVWHPLYDGKVAPGLAAISQVPLAGWAQIVAAIAIIELTIGKQDYENKAPGDLGFGAAFNPFADDAAAFAELQLKELKNGRLAMMGFTGMVVHEALTGQTPLTNLAT 459
            G DVETK V+DPL FSKDE ALFR R VELKHGR+ MLATLGY+ AEV+HPLYDGK+  GL AISQVP+AGW QI+AAI ++ELT+GKQD+ENKAPGDLGFG  FNPF +D   FA LQLKELKNGRLAMMG  GM+V E LTGQTPL  LA+
Sbjct:   47 GADVETKGVWDPLGFSKDEAALFRRRVVELKHGRICMLATLGYLVAEVYHPLYDGKIPAGLGAISQVPMAGWLQIIAAIGVVELTVGKQDFENKAPGDLGFGLGFNPFPNDPEKFAALQLKELKNGRLAMMGIMGMMVQEGLTGQTPLAQLAS 199          
BLAST of mRNA_P-wetherbeei_contig78.7.1 vs. uniprot
Match: A0A0G4EVU7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EVU7_VITBC)

HSP 1 Score: 216 bits (550), Expect = 6.350e-69
Identity = 107/151 (70.86%), Postives = 122/151 (80.79%), Query Frame = 1
Query:    1 GVDVETKTVFDPLKFSKDEGALFRYREVELKHGRVAMLATLGYVTAEVWHPLYDGKVAPGLAAISQVPLAGWAQIVAAIAIIELTIGKQDYENKAPGDLGFGAAFNPFADDAAAFAELQLKELKNGRLAMMGFTGMVVHEALTGQTPLTNL 453
            G DVET+ V+DPL FSKDE +L+RYR VELKHGRVAMLA LGY  AE+WHPLYDGKV PGL AISQVP AGW QI+A IA IEL+IGKQD+EN+APGDLGFG   NPF +D   FA+LQLKE+KNGRLAM+   GM+V E +TGQT L  L
Sbjct:   46 GADVETRGVWDPLGFSKDESSLYRYRAVELKHGRVAMLAVLGYFVAELWHPLYDGKVEPGLKAISQVPSAGWLQILATIAAIELSIGKQDFENRAPGDLGFG--INPFENDPVEFAKLQLKEIKNGRLAMIAIAGMLVQELVTGQTTLQQL 194          
BLAST of mRNA_P-wetherbeei_contig78.7.1 vs. uniprot
Match: D7FPU8_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPU8_ECTSI)

HSP 1 Score: 207 bits (526), Expect = 3.520e-65
Identity = 99/154 (64.29%), Postives = 122/154 (79.22%), Query Frame = 1
Query:    1 GVDVETKTVFDPLKFSKDEGALFRYREVELKHGRVAMLATLGYVTAEVWHPLYDGKVAPGLAAISQVPLAGWAQIVAAIAIIELTIGKQDYENKAPGDLG-FGAAFNPFADDAAAFAELQLKELKNGRLAMMGFTGMVVHEALTGQTPLTNLAT 459
            G DVET  VFDPL + KD+ +LFR R VELKHGRVAMLA  GY+ AE WHPLYDGK++PGL A+ ++PLA W QI+ AIA++ELT+GKQDYENKAPG+LG FG A+NP+ D+  AF++LQLKELKNGRLAM+   G +V E LTGQT +  L +
Sbjct:   50 GADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLTS 203          
BLAST of mRNA_P-wetherbeei_contig78.7.1 vs. uniprot
Match: W7TFG9_9STRA (Light harvesting complex protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFG9_9STRA)

HSP 1 Score: 204 bits (519), Expect = 2.870e-64
Identity = 98/152 (64.47%), Postives = 120/152 (78.95%), Query Frame = 1
Query:    1 GVDVETKTVFDPLKFSKDEGALFRYREVELKHGRVAMLATLGYVTAEVWHPLYDGKVAPGLAAISQVPLAGWAQIVAAIAIIELTIGKQDYENKAPGDLGFGAAFNPFADDAAAFAELQLKELKNGRLAMMGFTGMVVHEALTGQTPLTNLA 456
            G DVET  V+DPL FSKDEG+L+RYR VELKHGR+AMLA LG   +E +HPLYDGK++PG+ AI ++P   W QI+A I +IELT+GKQD ENKAPGDLGFG  FNPF +D   FAELQLKELKNGRLAM+G  G+++ E++TGQT    +A
Sbjct:   40 GSDVETGGVWDPLNFSKDEGSLYRYRAVELKHGRLAMLAVLGLWVSEFYHPLYDGKISPGIKAIGELPGPAWLQILATIGVIELTVGKQDTENKAPGDLGFGYNFNPFKNDPEKFAELQLKELKNGRLAMLGAAGILLQESITGQTCFEQIA 191          
BLAST of mRNA_P-wetherbeei_contig78.7.1 vs. uniprot
Match: A0A0G4GZZ5_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GZZ5_9ALVE)

HSP 1 Score: 167 bits (423), Expect = 7.330e-50
Identity = 89/146 (60.96%), Postives = 106/146 (72.60%), Query Frame = 1
Query:    1 GVDVETKTVFDPLKFSKDEGALFRYREVELKHGRVAMLATLGYVTAEVWHPLYDGKVAPGLAAISQVPLAGWAQIVAAIAIIELTIGKQDYENKAPGDLGFGAAFNPFADDAAAFAELQLKELKNGRLAMMGFTGMVVHEALTGQT 438
            G D+ET+  FDPLK +KDE  LFRYREVELKHGR+AMLA LGY TAE + P +DG V  GL AI +VP AGW QI+ AI   EL+ GKQ  +++APGD GFG  F  + D    FAELQLKELKNGRLAM+G + ++  EA TGQT
Sbjct:   44 GADMETRGPFDPLKLAKDEN-LFRYREVELKHGRLAMLAFLGYCTAEAYRPFFDGAVPNGLGAIGKVPTAGWLQILLAIGAYELSFGKQK-DDRAPGDYGFGIKF--YEDQPEKFAELQLKELKNGRLAMIGISAVLAAEAATGQT 185          
BLAST of mRNA_P-wetherbeei_contig78.7.1 vs. uniprot
Match: A0A7R9U311_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U311_9STRA)

HSP 1 Score: 152 bits (385), Expect = 5.960e-44
Identity = 85/153 (55.56%), Postives = 107/153 (69.93%), Query Frame = 1
Query:    1 GVDVETKTVFDPLKFSKDEGALFRYREVELKHGRVAMLATLGYVTAEV-WHPLYDGKVAPGLAAISQVPLAGWAQIVAAIAIIELTIGKQDYENKAPGDL-GFGAAFNPFADDAAAFAELQLKELKNGRLAMMGFTGMVVHEALTGQTPLTNL 453
            G DVET   +DPL  +K+E AL R R VELKHGRVAMLA LG +  +  +HPL+DGK+  G+ AIS+VP AGW QI+ AIA IEL  G  D E+K PGD+ GFG+AF P  +D   + +LQL+ELK+GRLAM+   G +V E +TGQT L  L
Sbjct:   42 GADVETNGFWDPLGLAKNEEALGRRRHVELKHGRVAMLAVLGNIVTDAGYHPLFDGKIPAGIGAISKVPTAGWVQILFAIAAIELRYGGYD-ESKTPGDIAGFGSAFIP--EDPVEYEKLQLRELKHGRLAMIAILGELVQEQITGQTVLQQL 191          
BLAST of mRNA_P-wetherbeei_contig78.7.1 vs. uniprot
Match: W7U405_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U405_9STRA)

HSP 1 Score: 152 bits (383), Expect = 1.230e-43
Identity = 92/156 (58.97%), Postives = 105/156 (67.31%), Query Frame = 1
Query:    1 GVDVETKTVFDPLKFSKDEGALFRYREVELKHGRVAMLATLGYVTAEVWHPLYDGKVAPG-LAAISQV----PLAGWAQIVAAIAIIELTIGKQDYENKAPGDLGFGAAFNPFADDAAAFAELQLKELKNGRLAMMGFTGMVVHEALTGQTPLTNL 453
            G DVET  VFDPL  +KDE +L+R R +ELKHGRVAMLA LG +    +H   +    P  LAA++QV    P+A W QI  AI  IELTIGKQD  N+APGD+GFGAAF P  DDA  FA LQLKELKNGRLAMM   G  V E LTGQ P+  L
Sbjct:   39 GSDVETNGVFDPLGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQSFYHLPDEVFSNPRPLAALAQVYSERPVAFW-QIFLAIGAIELTIGKQDTANRAPGDVGFGAAFIP--DDAEDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQL 191          
BLAST of mRNA_P-wetherbeei_contig78.7.1 vs. uniprot
Match: A0A835ZAI4_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAI4_9STRA)

HSP 1 Score: 150 bits (378), Expect = 9.370e-43
Identity = 90/158 (56.96%), Postives = 103/158 (65.19%), Query Frame = 1
Query:    1 GVDVETKTVFDPLKFSKDEGALFRYREVELKHGRVAMLATLGYVTAEVWHPLYDG------KVAPGLAAISQVPLAGWAQIVAAIAIIELTIGKQDYENKAPGDLG-FGAAFNPFADDAAAFAELQLKELKNGRLAMMGFTGMVVHEALTGQTPLTNL 453
            G+DVET  +FDPL FSKDE +LFR R VELKHGR+ MLAT G +     H L D        +   L  + Q P+A   QI+ AI ++ELT G QDY NKAPGDLG FG AF P  DDA   AELQLKELKNGRLAMMG  GM+V E LT Q P+  L
Sbjct:   48 GIDVETGGLFDPLGFSKDEASLFRRRAVELKHGRICMLATFGVLVQTYVH-LPDAVFSNPRPIGALLQVLDQRPVAA-IQILLAIGLLELTAGAQDYANKAPGDLGRFGDAFKP--DDAGELAELQLKELKNGRLAMMGIMGMLVQEGLTKQGPIEQL 201          
BLAST of mRNA_P-wetherbeei_contig78.7.1 vs. uniprot
Match: A0A835ZIK7_9STRA (Chlorophyll a/b-binding protein domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIK7_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.350e-41
Identity = 86/159 (54.09%), Postives = 107/159 (67.30%), Query Frame = 1
Query:    1 GVDVETKTVFDPLKFSKDEGALFRYREVELKHGRVAMLATLGYVTAEVWH---PLYDGKVAPGLAAISQV----PLAGWAQIVAAIAIIELTIGKQDYENKAPGDLG-FGAAFNPFADDAAAFAELQLKELKNGRLAMMGFTGMVVHEALTGQTPLTNL 453
            G D+ET  V+DPL+ SKD+G LF+YREVELKHGRVAMLATLG +     H   P++       LAA+SQ+    P+A W QI  A+   EL+IGKQDYENKAPGD+  FG    P  +D   + ++QL+ELKNGRLAM+   GM V EALTGQ P+  L
Sbjct:   20 GADIETSGVWDPLRLSKDDGNLFKYREVELKHGRVAMLATLGVLVQSFNHLPDPVFSNP--RPLAALSQILAERPVAFW-QIFLAVGAFELSIGKQDYENKAPGDIATFGDFVKPSDEDE--WEKIQLRELKNGRLAMVASIGMFVQEALTGQGPIEQL 173          
BLAST of mRNA_P-wetherbeei_contig78.7.1 vs. uniprot
Match: A0A0G4GDB0_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GDB0_VITBC)

HSP 1 Score: 141 bits (355), Expect = 2.620e-39
Identity = 89/153 (58.17%), Postives = 104/153 (67.97%), Query Frame = 1
Query:    1 GVDVETKTVFDPLKFSKDEGALFRYREVELKHGRVAMLATLGYVTAEVWHPLYDGKVAPG--LAAISQV----PLAGWAQIVAAIAIIELTIGKQDYENKAPGDLG-FGAAFNPFADDAAAFAELQLKELKNGRLAMMGFTGMVVHEALTGQT 438
            G DVET  VFDPLKFS+DE +LFR R VELKHGR+AMLA LGY        L D   +    L+A+++V    P A  AQIVAAIA IEL  G+QDYENKAPGDLG FG +F     D   F + QL+ELKNGRLAM+G  GM+V E LTGQ+
Sbjct:   51 GADVETGGVFDPLKFSEDEASLFRRRAVELKHGRIAMLACLGYFVQSAGVHLPDPVFSEPRPLSALTKVLTERPWAA-AQIVAAIAAIELGPGRQDYENKAPGDLGYFGDSFKN--SDPEEFRKDQLRELKNGRLAMIGIMGMMVQEGLTGQS 200          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig78.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZQ88_9STRA7.110e-7673.86Light harvesting complex protein n=2 Tax=Tribonema... [more]
A0A0G4EVU7_VITBC6.350e-6970.86Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
D7FPU8_ECTSI3.520e-6564.29Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
W7TFG9_9STRA2.870e-6464.47Light harvesting complex protein n=2 Tax=Monodopsi... [more]
A0A0G4GZZ5_9ALVE7.330e-5060.96Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A7R9U311_9STRA5.960e-4455.56Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
W7U405_9STRA1.230e-4358.97Light-harvesting protein n=2 Tax=Monodopsidaceae T... [more]
A0A835ZAI4_9STRA9.370e-4356.96Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A835ZIK7_9STRA1.350e-4154.09Chlorophyll a/b-binding protein domain-containing ... [more]
A0A0G4GDB0_VITBC2.620e-3958.17Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig78contigP-wetherbeei_contig78:6628..7464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FPU8
PFAMsChloroa_b-bind
Model size468
Max annot lvl2759|Eukaryota
KEGG koko:K08907
KEGG Pathwayko00196,map00196
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.78e-66
EggNOG OGs2CDPH@1|root,2S44M@2759|Eukaryota
DescriptionChlorophyll A-B binding protein
Cds size468
COG categoryU
BRITEko00000,ko00001,ko00194
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187001.137071-CDS-P-wetherbeei_contig78:6627..68941683187001.137071-CDS-P-wetherbeei_contig78:6627..6894Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig78 6628..6894 +
1683187001.1513996-CDS-P-wetherbeei_contig78:7081..71981683187001.1513996-CDS-P-wetherbeei_contig78:7081..7198Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig78 7082..7198 +
1683187001.1715515-CDS-P-wetherbeei_contig78:7380..74641683187001.1715515-CDS-P-wetherbeei_contig78:7380..7464Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig78 7381..7464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig78.7.1prot_P-wetherbeei_contig78.7.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig78 6628..7464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig78.7.1

>prot_P-wetherbeei_contig78.7.1 ID=prot_P-wetherbeei_contig78.7.1|Name=mRNA_P-wetherbeei_contig78.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=156bp
GVDVETKTVFDPLKFSKDEGALFRYREVELKHGRVAMLATLGYVTAEVWH
PLYDGKVAPGLAAISQVPLAGWAQIVAAIAIIELTIGKQDYENKAPGDLG
FGAAFNPFADDAAAFAELQLKELKNGRLAMMGFTGMVVHEALTGQTPLTN
LATFF*
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mRNA from alignment at P-wetherbeei_contig78:6628..7464+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig78.7.1 ID=mRNA_P-wetherbeei_contig78.7.1|Name=mRNA_P-wetherbeei_contig78.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=837bp|location=Sequence derived from alignment at P-wetherbeei_contig78:6628..7464+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGTTGACGTCGAGACGAAGACCGTTTTCGACCCCCTTAAGTTCTCGAA GGACGAGGGCGCCCTTTTCCGTTACCGCGAGGTTGAGCTGAAGCACGGCC GTGTGGCCATGCTCGCGACGCTCGGATACGTCACTGCGGAGGTGTGGCAC CCGCTCTACGATGGCAAGGTCGCCCCGGGCCTCGCCGCTATCAGTCAGGT GCCCCTGGCGGGCTGGGCCCAGATCGTCGCCGCGATCGCCATCATTGAGC TGACGATTGGCAAGCAGGTCAGTCAACAAATGAGCAGCAACGTTATCGGC AAGCTACAGGTTTGGGATCGCGGGGGCGCCACAGGGGCTACTGCGGCCTT TGGGAGAGTTGCTGCCGCGTTCGATGGAGGCGCAATGCAATCGTAGTGCA TCTCTCTTGTCTTACTCGCTCGATTTTGGTTGCTCACATCTGCTTTTACC GCAGGACTACGAGAACAAGGCGCCCGGCGACCTTGGCTTCGGAGCGGCGT TCAATCCCTTCGCCGACGACGCGGCCGCTTTTGCCGAGCTTCAGCTTAAG GAGCTGAAGAACGGACGGCTGGTGCGATACGCCTTTCAAGCGACCCCGCA TATTTACTGCTTATCATTTCTTCTTGACATATGGAGCAGGCTGCCGCATT TACTCGCGCGTGCCTTCCTTCGTTTCTCCCATCGTCAGTTAAAATACAAG CCTGCTCGCATCTTTCTCACCGTTCCACCTGTACTCGGGTTTTCTCTCGT CAGGCCATGATGGGATTCACCGGGATGGTGGTCCACGAGGCCCTCACCGG CCAAACGCCATTGACCAACCTGGCCACCTTCTTCTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig78:6628..7464+

>mRNA_P-wetherbeei_contig78.7.1 ID=mRNA_P-wetherbeei_contig78.7.1|Name=mRNA_P-wetherbeei_contig78.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig78:6628..7464+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGTTGACGTCGAGACGAAGACCGTTTTCGACCCCCTTAAGTTCTCGAA
GGACGAGGGCGCCCTTTTCCGTTACCGCGAGGTTGAGCTGAAGCACGGCC
GTGTGGCCATGCTCGCGACGCTCGGATACGTCACTGCGGAGGTGTGGCAC
CCGCTCTACGATGGCAAGGTCGCCCCGGGCCTCGCCGCTATCAGTCAGGT
GCCCCTGGCGGGCTGGGCCCAGATCGTCGCCGCGATCGCCATCATTGAGC
TGACGATTGGCAAGCAGGACTACGAGAACAAGGCGCCCGGCGACCTTGGC
TTCGGAGCGGCGTTCAATCCCTTCGCCGACGACGCGGCCGCTTTTGCCGA
GCTTCAGCTTAAGGAGCTGAAGAACGGACGGCTGGCCATGATGGGATTCA
CCGGGATGGTGGTCCACGAGGCCCTCACCGGCCAAACGCCATTGACCAAC
CTGGCCACCTTCTTCTAA
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