mRNA_P-wetherbeei_contig78.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig78.2.1 vs. uniprot
Match: A0A835Z6C4_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6C4_9STRA) HSP 1 Score: 338 bits (868), Expect = 2.290e-114 Identity = 166/246 (67.48%), Postives = 197/246 (80.08%), Query Frame = 1
Query: 19 SFLKEPAPGKGPLGQWYVRDDPTVSVALPWISKPDIAGGSLVGDNGFDPLGLAKTFDISWMRAAELKHGRVCMLAAVGLLAPELVQHPAGFEGFHFAPEFTEMNTIAALAAVPKFGLAQIVLACGLIEIATFGSNYNSAYSFDDNLSKLERDSIAKNQRVFLTGAAKTTNDVNPFGSAENVGFMVGEGKTPGDLGFDPLGFAASGVKPEYAESEIKHARLAMIGVAGMLAQQFYASSGTGGILEQT 756
+FL+E PG+G G WYVR+DPT+S +LPW++KP I G ++GD GFDPL L+KTFDISW+RAAELKHGRVCMLAAVGL+ PELVQHP GF+GF F EFT+MN IAAL AVPKFGLAQIVLACGLIEIATFGSNYNSA++++D LS LER + N+R FLTG AKTT+++N FG+A VGF GDLGFDPLG AA+GV+ +YA +EIKHARLAMIGV GML QFY S G+L+QT
Sbjct: 45 AFLRETEPGQGAAGAWYVREDPTLSTSLPWVTKPVIGDGDMIGDVGFDPLSLSKTFDISWLRAAELKHGRVCMLAAVGLVTPELVQHPVGFDGFSFPAEFTQMNAIAALGAVPKFGLAQIVLACGLIEIATFGSNYNSAFNYEDGLSLLERAKLEGNERTFLTGVAKTTSNINKFGNALEVGFEKPGSDNAGDLGFDPLGLAANGVRSDYALAEIKHARLAMIGVLGMLLGQFYEPSK--GVLQQT 288
BLAST of mRNA_P-wetherbeei_contig78.2.1 vs. uniprot
Match: W7TZB5_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZB5_9STRA) HSP 1 Score: 306 bits (783), Expect = 2.130e-101 Identity = 150/254 (59.06%), Postives = 190/254 (74.80%), Query Frame = 1
Query: 1 RAFVAASFLKEPAPGKGPLGQWYVRDDPTVSVALPWISKPDIAGGSLVGDNGFDPLGLAKTFDISWMRAAELKHGRVCMLAAVGLLAPELVQHPAGFEGFHFAPEFTEMNTIAALAAVPKFGLAQIVLACGLIEIATFGSNYNSAYSFDDNLSKLERDSIAKNQRVFLTGAAKTTND--VNPFGSAENVGFMVGEGKTPGDLGFDPLGFAASGVKPEYAESEIKHARLAMIGVAGMLAQQFYASSGTGGILEQT 756
+A A ++LKE PG GPLG+WYVRDDPT+S ALPW+++P+I GSLVGD GFDP GL+K FD++W+R AELKHGR+ MLA +G++ PELVQ PAGFEGF FAPEF+E+N I AL+AVP GLAQI+LA +E+ATF YN ++F+DNL+ LER + + + L+GAAKT VNPFG+A +VGF E PGDLGFDP+GF +G+ P+YA +EIKHARLAM+G AGML Q+F G IL QT
Sbjct: 43 KAATANNYLKEVEPGSGPLGKWYVRDDPTLSTALPWVTRPEIGDGSLVGDFGFDPFGLSKIFDVNWLRNAELKHGRLAMLATLGMVTPELVQAPAGFEGFKFAPEFSELNAIKALSAVPTLGLAQIILAISFVEVATFSKVYNERFTFEDNLTPLERKKVVQGRFSDLSGAAKTQAKAGVNPFGNAVDVGFQDPEKFVPGDLGFDPVGFTDNGINPDYALAEIKHARLAMLGAAGMLIQEFLQPKG---ILSQT 293
BLAST of mRNA_P-wetherbeei_contig78.2.1 vs. uniprot
Match: A0A7R9U4N3_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4N3_9STRA) HSP 1 Score: 259 bits (662), Expect = 3.620e-83 Identity = 135/245 (55.10%), Postives = 163/245 (66.53%), Query Frame = 1
Query: 22 FLKEPAPGKGPLGQWYVRDDPTVSVALPWISKPDIAGGSLVGDNGFDPLGLAKTFDISWMRAAELKHGRVCMLAAVGLLAPELVQHPAGFEGFHFAPEFTEMNTIAALAAVPKFGLAQIVLACGLIEIATFGSNYNSAYSFDDNLSKLERDSIAKNQRVFLTGAAKTTNDVNPFGSAENVGFMVGEGKTPGDLGFDPLGFAASGVKPEYAESEIKHARLAMIGVAGMLAQQFYASSGTGGILEQT 756
FL++P G GP GQW + +S ALPW KP I G+L GD GFDP GL+K F ++W+RAAE+KHGRVCMLAAVGL+APELVQ+P G+EG F P F EMN AL VP GLAQIVL GL+EI + SNY ++FDD L+ +ER I FLTG AK + E + V E +PGDLGFDPLGFA G+KPE+AE+EIKHARLAM+G GML QQ A + G+LE T
Sbjct: 44 FLRDPLAGFGPDGQWLPKTKEGMSQALPWSDKPVIGDGNLAGDRGFDPWGLSKIFPLAWLRAAEIKHGRVCMLAAVGLIAPELVQNPVGYEGLQFDPVFQEMNAFKALGTVPGLGLAQIVLVAGLVEIFSIKSNYEGTFTFDDGLTSIERSDIDSGAFKFLTGGAKNALAADTKSKFETL--QVTEQVSPGDLGFDPLGFADDGIKPEFAEAEIKHARLAMLGTLGMLIQQ--AKTPEFGLLEYT 284
BLAST of mRNA_P-wetherbeei_contig78.2.1 vs. uniprot
Match: D7FPU7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPU7_ECTSI) HSP 1 Score: 247 bits (630), Expect = 1.340e-78 Identity = 134/259 (51.74%), Postives = 166/259 (64.09%), Query Frame = 1
Query: 4 AFVAASFLKEPAPGKGPL--------GQWYVRDDPTVSVALPWISKPDIAGGSLVGDNGFDPLGLAK-TFDISWMRAAELKHGRVCMLAAVGLLAPELVQHPAGFEGFHFAPEFTEMNTIAALAAVPKFGLAQIVLACGLIEIATFGSNYNSAYSFDDNLSKLERDSIAKNQRVFLTGAAKTTNDVNPFGSAENVGFMVGEGKTPGDLGFDPLGFAASGVKPEYAESEIKHARLAMIGVAGMLAQQFYASSGTGGILEQ 753
AFVA S + P G W+ D T SVALPW KP I G +VGD GFDPL LA D+ W+R AELKHGR+CMLA VG++APELVQHP GF GF FAPEFT+MN AAL++VP+ GLAQIV+ C LIE+A+F N Y ++D+L+KLE + + + +L GAAK + P EN + + PGDLGFDPLG AA+G+ P+YA +E+KHARLAMIG GM QQ A GG+LEQ
Sbjct: 16 AFVAPSLVSSRVASSAPKTTMMAEVPGSWWTPSDGTKSVALPWADKPLIGDGDMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQHPVGFSGFEFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTEKYLYEDDLTKLELKNKSLGKTDYLAGAAK----IAPV--TENKDQVFEDTVIPGDLGFDPLGLAANGINPDYALAELKHARLAMIGFLGMAVQQ--AVDPNGGVLEQ 266
BLAST of mRNA_P-wetherbeei_contig78.2.1 vs. uniprot
Match: A0A7S1XTT1_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XTT1_9STRA) HSP 1 Score: 238 bits (607), Expect = 1.750e-74 Identity = 119/217 (54.84%), Postives = 148/217 (68.20%), Query Frame = 1
Query: 64 WYVRDDPTVSVALPWISKPDIAGGSLVGDNGFDPLGLAKTFDISWMRAAELKHGRVCMLAAVGLLAPELVQHPAGFEGFHFAPEFTEMNTIAALAAVPKFGLAQIVLACGLIEIATFGSNYNSAYSFDDNLSKLERDSIAKNQRVFLTGAAKTTNDVNPFGSAENVGFMVGEGKTPGDLGFDPLGFAASGVKPEYAESEIKHARLAMIGVAGMLAQQ 714
W + +S ALPW KP I G+L GD GFDP L+ F ++W+RAAELKHGRVCMLAAVGL+APEL QHP GFEG FAPEFTEMN AL P GLAQI+L CGL+EI TFG Y+ +++DD L+K+E++ I FLTG AK + + + V EG+ GD+GFDPLGFA +GV P+YA +E+KH R+AM+GV GML QQ
Sbjct: 58 WLPKPVDGMSAALPWSDKPVIGDGTLAGDQGFDPWNLSSVFPLTWLRAAELKHGRVCMLAAVGLVAPELFQHPIGFEGLKFAPEFTEMNAFKALNTAPGLGLAQILLFCGLVEIFTFGKAYDGTFTYDDGLTKIEKEDIDAGAFKFLTGGAKNAVAADTASKFDGL-TTVDEGRA-GDIGFDPLGFADNGVNPDYALAELKHGRVAMLGVLGMLIQQ 272
BLAST of mRNA_P-wetherbeei_contig78.2.1 vs. uniprot
Match: A0A0G4G8I9_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G8I9_VITBC) HSP 1 Score: 230 bits (586), Expect = 1.450e-71 Identity = 122/246 (49.59%), Postives = 158/246 (64.23%), Query Frame = 1
Query: 22 FLKEPAPGKGPLGQWYVRDDPTVSVALPWISKPDIAGGSLVGDNGFDPLGLAKTFDISWMRAAELKHGRVCMLAAVGLLAPELVQHPAGFEGFHFAPEFTEMNTIAALAAVPKFGLAQIVLACGLIEIATFGSNYNSAYSFD-DNLSKLERDSIAKNQRVFLTGAAKTTNDVNPFGSAENVGFMVGEGKTPGDLGFDPLGFAASGVKPEYAESEIKHARLAMIGVAGMLAQQFYASSGTGGILEQT 756
+ ++P PG GPLGQWYVRDDP +S ALPW+S+P I G+LVGD GFDP GL+K +I W+R AELKHGRVCMLA+VGLLAPELVQ P GF+G F P F+E++ AL A+P G+AQI++A LIE+ T YN +L+ ER + FL G A ++ G + PGDLG+DPLG A +G++ ++A +EIKHARLAMIG GM+ Q F + IL+QT
Sbjct: 50 YTRQPEPGVGPLGQWYVRDDPNISPALPWVSRPTIGDGNLVGDFGFDPFGLSKLVNIQWLRNAELKHGRVCMLASVGLLAPELVQRPEGFKGIDFVPAFSELSPYKALTALPPAGIAQIIIAIALIELTTAKYLYNPTTKIKLADLTLRERALVQTGNTRFLAGGAFA--ELGRLGEERIEERPDAVSRVPGDLGWDPLGLADNGIREDWALAEIKHARLAMIGTLGMMLQAFIEPNKP--ILQQT 291
BLAST of mRNA_P-wetherbeei_contig78.2.1 vs. uniprot
Match: A0A0G4FH94_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FH94_VITBC) HSP 1 Score: 197 bits (502), Expect = 3.580e-59 Identity = 118/255 (46.27%), Postives = 154/255 (60.39%), Query Frame = 1
Query: 22 FLKEPAPGKGPLGQWYVRDDPT------VSVALPWISKPDIAGGSLVGDNGFDPLGLAKTFDISWMRAAELKHGRVCMLAAVGLLAPELVQHPAGFEGFHFAPEFTEMNTIAALAAVPKFGLAQIVLACGLIEIATFGSNYNSAYSFD-DNLSKLERDSIAKNQRVFLTGAAKTTNDVNPFGSAENVGFMVGEG---KTPGDLGFDPLGFAASGVKPEYAESEIKHARLAMIGVAGMLAQQFYASSGTGGILEQT 756
+ ++P+PG W D P VS+ALPW++KP I G+LVGD GFDPLGL+K D+ ++R AELKHGR+CMLAAVGLLAPELVQ PAGF+G F P F+EMN AL A+P GL QI++A LIE+ T ++ + ++S+ ER + FL G+A+ S N M G + PGDLGFDPLG A G++ ++A +EIKH RLAM+ V GML Q + GILE T
Sbjct: 24 YTRQPSPGGEGQKVWERLDVPQIRVPSDVSLALPWVAKPQIGDGTLVGDFGFDPLGLSKIADVGFLRNAELKHGRLCMLAAVGLLAPELVQKPAGFDGLEFVPAFSEMNPFKALFAMPPAGLMQILIAIALIELNTAKFLWDPSMKMRITDMSEKERLLVQTGNTRFLAGSARPQ-----LASLGNEVVMEKSGMFSRVPGDLGFDPLGLADEGIREDWALAEIKHGRLAMLAVLGMLLQ--VGARPDKGILEMT 271
BLAST of mRNA_P-wetherbeei_contig78.2.1 vs. uniprot
Match: A0A0G4HNT2_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HNT2_9ALVE) HSP 1 Score: 179 bits (455), Expect = 6.170e-52 Identity = 103/247 (41.70%), Postives = 129/247 (52.23%), Query Frame = 1
Query: 16 ASFLKEPAPGKGPLGQWYVRDDPTVSVALPWISKPDIAGGSLVGDNGFDPLGLAKTFDISWMRAAELKHGRVCMLAAVGLLAPELVQHPAGFEGFHFAPEFTEMNTIAALAAVPKFGLAQIVLACGLIEIATFGSNYNSAYSFDDNLSKLERDSIAKNQRVFLTGAAKTTNDVNPFGSAENVGFMVGEGKTPGDLGFDPLGFAASGVKPEYAESEIKHARLAMIGVAGMLAQQFYASSGTGGILEQT 756
A +LKE P P G WY+ DP +S + PW+ K I G+L GD GFDPL L++ D WMR AELKHGR+ MLA VGLL PEL+ P GF+G +F P F + + AL P G+ QI L LIE T N + K I + F E +TPG +GFDP GFA +G++ ++AE+EIKHARLAM+G AGML Q ILEQT
Sbjct: 70 ADYLKEAEPAAYPRGAWYIVQDPEISKSAPWVKKEQIYDGTLAGDYGFDPLRLSERRDAWWMRTAELKHGRIAMLACVGLLTPELILKPEGFKGLNFVPAFDAVAPLEALRKAPPLGILQIALVLALIEFQTLKYVKNPMEYLQPYMDK----GIKFSDEYF-------------------------EKRTPGSIGFDPAGFADNGIRSDFAEAEIKHARLAMVGAAGMLIQSLIKPDMP--ILEQT 285
BLAST of mRNA_P-wetherbeei_contig78.2.1 vs. uniprot
Match: A0A8J6CE65_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CE65_DIALT) HSP 1 Score: 126 bits (317), Expect = 5.700e-32 Identity = 82/208 (39.42%), Postives = 108/208 (51.92%), Query Frame = 1
Query: 91 SVALPWISKPDIAGGSLVGDNGFDPLGLAKTFDISWMRAAELKHGRVCMLAAVGLLAPELVQHPAGFEGFHFAPEF--TEMNTIAALAAVPKFGLAQIVLACGLIEIATFGSNYNSAYSFDDNLSKLERDSIAKNQRVFLTGAAKTTNDVNPFGSAENVGFMVGEGKTPGDLGFDPLGFAASGVKPEYAESEIKHARLAMIGVAGMLA 708
S ++P+ KP G+L+GD GFDPLGL+ +DI W+RAAE+KHGRV MLAA G L E + P PE T + AL+ P GLAQIV LIE+ T S + ++D+ N+ G G +PGDLG+DPLG +A G+ +YA +E+KH RLAM+G AGMLA
Sbjct: 48 SASIPFAPKPAKLDGTLLGDIGFDPLGLSNLWDIKWLRAAEIKHGRVGMLAATGFLVQEGYRLPGPASN----PELFATAKTPLEALSTAPPLGLAQIVALIFLIELVTSSSLLITDSFYEDS---------------------------------PNLKAPAGSG-SPGDLGWDPLGLSAGGLNLDYAIAELKHGRLAMLGAAGMLA 217
BLAST of mRNA_P-wetherbeei_contig78.2.1 vs. uniprot
Match: L1IG04_GUITC (Light-harvesting Chl a protein 2 n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IG04_GUITC) HSP 1 Score: 120 bits (300), Expect = 1.020e-29 Identity = 78/216 (36.11%), Postives = 100/216 (46.30%), Query Frame = 1
Query: 91 SVALPWISKPDIAGGSLVGDNGFDPLGLAKTFDISWMRAAELKHGRVCMLAAVGLLAPELVQHPAGFEGFHFAPEFTEMNTIAALAAVPKFGLAQIVLACGLIEIATFGSNYNSAYSFDDNLSKLERDSIAKNQRVFLTGAAKTTNDVNPFGSAENVGFMVGEGKTPGDLGFDPLGFAAS-GVKPEYAESEIKHARLAMIGVAGMLAQQFYASSGT 735
S A+P++S+P G++ GD GFDPLG + FD+ W+R AELKHGRVCML +G L E Q P P F E I A VP GL QI G IEI ++ N R+ + G M +G+ PGDLGFDPL ++ + +E+KH RLAMIG+ GML QQ T
Sbjct: 40 SYAVPFLSRPPALDGTMAGDVGFDPLGFSNYFDLKWLREAELKHGRVCMLGTLGFLVQEKFQLPL--------PGFGEKLPIEAFFTVPTGGLWQIFFTLGAIEI------------------------LSNNGRI-------------------SPGDMFADGRAPGDLGFDPLNLSSDESALRRFELAELKHGRLAMIGLGGMLHQQLLTKQPT 204 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig78.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig78.2.1 >prot_P-wetherbeei_contig78.2.1 ID=prot_P-wetherbeei_contig78.2.1|Name=mRNA_P-wetherbeei_contig78.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=252bp RAFVAASFLKEPAPGKGPLGQWYVRDDPTVSVALPWISKPDIAGGSLVGDback to top mRNA from alignment at P-wetherbeei_contig78:4195..5164- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig78.2.1 ID=mRNA_P-wetherbeei_contig78.2.1|Name=mRNA_P-wetherbeei_contig78.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=970bp|location=Sequence derived from alignment at P-wetherbeei_contig78:4195..5164- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig78:4195..5164- >mRNA_P-wetherbeei_contig78.2.1 ID=mRNA_P-wetherbeei_contig78.2.1|Name=mRNA_P-wetherbeei_contig78.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=756bp|location=Sequence derived from alignment at P-wetherbeei_contig78:4195..5164- (Phaeothamnion wetherbeei SAG_119_79)back to top |