mRNA_P-wetherbeei_contig7799.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7799.1.1
Unique NamemRNA_P-wetherbeei_contig7799.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7799.1.1 vs. uniprot
Match: A0A835ZJQ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJQ0_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 5.630e-10
Identity = 45/85 (52.94%), Postives = 50/85 (58.82%), Query Frame = 1 
Query:    1 LDAYGRRPPLATAVAGPLSTASGNVDIADDSEAAKTLARDFAFWGFDADAAASDGAADARASVGSRGQWGGEGAYGLTLVGSAKV 255
            LD YGRR PL  A+ GP S  +          AA TLA D     F A AA   GAADARAS G RG +GGEG YGL LVGSA++
Sbjct:  647 LDLYGRRTPLPDALRGPYSPPA----------AAATLAYDVDIADFSAFAAVDAGAADARASAGPRGAYGGEGHYGLRLVGSAQI 721
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BLAST of mRNA_P-wetherbeei_contig7799.1.1 vs. uniprot
Match: D7G8T0_ECTSI (F5/8 type C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8T0_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 1.390e-6
Identity = 35/85 (41.18%), Postives = 46/85 (54.12%), Query Frame = 1 
Query:    1 LDAYGRRPPLATAVAGPLSTASGNVDIADDSEAAKTLARDFAFWGFDADAAASDGAADARASVGSRGQWGGEGAYGLTLVGSAKV 255
            +D YGRR PL  A  G         +  D S    TL  D  F  F+A+   +  A+ A A++G RGQW GEG YGL LVG+A++
Sbjct:  485 VDLYGRRAPLPEAATG---------NFGDASSVVSTLTEDILFERFNANRTLNHSASHAAATLGPRGQWSGEGHYGLQLVGTAQI 560
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BLAST of mRNA_P-wetherbeei_contig7799.1.1 vs. uniprot
Match: A0A3B9J3S5_9ACTN (Fibronectin type-III domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3B9J3S5_9ACTN)

HSP 1 Score: 54.3 bits (129), Expect = 1.390e-6
Identity = 38/85 (44.71%), Postives = 48/85 (56.47%), Query Frame = 1 
Query:    1 LDAYGRRPPLATAVAGPLSTASGNVDIADDSEAAKTLARDFAFWGFDADAAASDGAADARASVGSRGQWGGEGAYGLTLVGSAKV 255
            +D YGRR  L  A  GP S         D + A  TL  D +F  F+A+A    G AD RA++G  G +GGEG+YGL LVGSA +
Sbjct:  497 VDLYGRRSHLPGAFVGPFS---------DFTNATATLQHDVSFNIFNANATVQHGPADERATLGPTGLFGGEGSYGLLLVGSANI 572
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BLAST of mRNA_P-wetherbeei_contig7799.1.1 vs. uniprot
Match: A0A7S4E5F2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E5F2_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 2.630e-6
Identity = 38/85 (44.71%), Postives = 48/85 (56.47%), Query Frame = 1 
Query:    1 LDAYGRRPPLATAVAGPLSTASGNVDIADDSEAAKTLARDFAFWGFDADAAASDGAADARASVGSRGQWGGEGAYGLTLVGSAKV 255
            +D YGRR  L  A  GP S         D + A  TL  D +F  F+A+A    G AD RA++G  G +GGEG+YGL LVGSA +
Sbjct:  862 VDLYGRRSHLPGAFVGPFS---------DFTNATATLQYDVSFNIFNANATVQHGPADERATLGPTGLFGGEGSYGLLLVGSANI 937
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7799.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835ZJQ0_9STRA5.630e-1052.94Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G8T0_ECTSI1.390e-641.18F5/8 type C domain-containing protein n=1 Tax=Ecto... [more]
A0A3B9J3S5_9ACTN1.390e-644.71Fibronectin type-III domain-containing protein n=1... [more]
A0A7S4E5F2_9STRA2.630e-644.71Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7799contigP-wetherbeei_contig7799:2555..2809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44056.XP_009038822.1
PFAMsLectin_legB,TIG,fn3
Model size255
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.19e-08
EggNOG OGs28KFE@1|root,2QSWE@2759|Eukaryota
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187001.069622-CDS-P-wetherbeei_contig7799:2554..28091683187001.069622-CDS-P-wetherbeei_contig7799:2554..2809Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7799 2555..2809 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7799.1.1prot_P-wetherbeei_contig7799.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7799 2555..2809 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7799.1.1

>prot_P-wetherbeei_contig7799.1.1 ID=prot_P-wetherbeei_contig7799.1.1|Name=mRNA_P-wetherbeei_contig7799.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=85bp
LDAYGRRPPLATAVAGPLSTASGNVDIADDSEAAKTLARDFAFWGFDADA
AASDGAADARASVGSRGQWGGEGAYGLTLVGSAKV
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mRNA from alignment at P-wetherbeei_contig7799:2555..2809+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7799.1.1 ID=mRNA_P-wetherbeei_contig7799.1.1|Name=mRNA_P-wetherbeei_contig7799.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig7799:2555..2809+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGACGCGTACGGCCGGCGACCGCCGCTCGCGACGGCAGTAGCGGGGCC
ACTGTCCACCGCTTCCGGCAACGTTGACATCGCCGACGACAGCGAGGCCG
CCAAGACACTGGCACGAGACTTCGCCTTTTGGGGGTTCGACGCTGATGCG
GCGGCGTCGGACGGGGCAGCGGACGCGAGGGCCTCTGTGGGGTCGCGGGG
GCAGTGGGGTGGGGAAGGCGCCTATGGCCTCACGCTCGTTGGCTCTGCAA
AGGTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7799:2555..2809+

>mRNA_P-wetherbeei_contig7799.1.1 ID=mRNA_P-wetherbeei_contig7799.1.1|Name=mRNA_P-wetherbeei_contig7799.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig7799:2555..2809+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGACGCGTACGGCCGGCGACCGCCGCTCGCGACGGCAGTAGCGGGGCC
ACTGTCCACCGCTTCCGGCAACGTTGACATCGCCGACGACAGCGAGGCCG
CCAAGACACTGGCACGAGACTTCGCCTTTTGGGGGTTCGACGCTGATGCG
GCGGCGTCGGACGGGGCAGCGGACGCGAGGGCCTCTGTGGGGTCGCGGGG
GCAGTGGGGTGGGGAAGGCGCCTATGGCCTCACGCTCGTTGGCTCTGCAA
AGGTA
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