mRNA_P-wetherbeei_contig7781.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7781.1.1
Unique NamemRNA_P-wetherbeei_contig7781.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7781.1.1 vs. uniprot
Match: A0A7S3HTJ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HTJ8_9STRA)

HSP 1 Score: 157 bits (396), Expect = 1.770e-47
Identity = 79/92 (85.87%), Postives = 90/92 (97.83%), Query Frame = 1 
Query:  100 FVDQKKGEVNELKALLRNINVERDAKKKRDVIKKVIAYMTLGIDVSRLFTEMIMAIETRDLVIKKMVYLYLCTYAHAKPDLAIMCINTLQRD 375
            FVDQKKGEVNELK LL+NINVERD K+KRDVIKKVIAYMTLGIDVSRLFT+MIMAIET+D+VIKKMVYLYLCTYA+++PDLAIMCIN+L+R+
Sbjct:    1 FVDQKKGEVNELKQLLKNINVERDMKRKRDVIKKVIAYMTLGIDVSRLFTDMIMAIETKDVVIKKMVYLYLCTYANSQPDLAIMCINSLRRE 92
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BLAST of mRNA_P-wetherbeei_contig7781.1.1 vs. uniprot
Match: A0A7S3XUT6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUT6_HETAK)

HSP 1 Score: 162 bits (410), Expect = 4.850e-46
Identity = 80/95 (84.21%), Postives = 89/95 (93.68%), Query Frame = 1 
Query:   91 QPYFVDQKKGEVNELKALLRNINVERDAKKKRDVIKKVIAYMTLGIDVSRLFTEMIMAIETRDLVIKKMVYLYLCTYAHAKPDLAIMCINTLQRD 375
            QPYF+DQ+KGEVNEL+ LLRNINVERD K+KRD+IKKVIAYMTLGIDVSRLFTEMI+AIET+DLV+KKMVYLYLC YAH KPD+AIM INTL RD
Sbjct:   22 QPYFIDQRKGEVNELRQLLRNINVERDPKRKRDIIKKVIAYMTLGIDVSRLFTEMILAIETKDLVVKKMVYLYLCNYAHQKPDMAIMAINTLLRD 116
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BLAST of mRNA_P-wetherbeei_contig7781.1.1 vs. uniprot
Match: A0A835YU68_9STRA (Coatomer protein complex, beta sub-unit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU68_9STRA)

HSP 1 Score: 164 bits (416), Expect = 9.600e-45
Identity = 82/93 (88.17%), Postives = 88/93 (94.62%), Query Frame = 1 
Query:   97 YFVDQKKGEVNELKALLRNINVERDAKKKRDVIKKVIAYMTLGIDVSRLFTEMIMAIETRDLVIKKMVYLYLCTYAHAKPDLAIMCINTLQRD 375
            YF DQKKGEVNELK LLR++ VERDAKK+RDVIKKVIAYMTLG+DVSRLFTEMIMAIETRDLV+KKMVYLYLCTYAH  PDLAIMC+NTLQRD
Sbjct:   45 YFTDQKKGEVNELKQLLRSVAVERDAKKRRDVIKKVIAYMTLGVDVSRLFTEMIMAIETRDLVVKKMVYLYLCTYAHTNPDLAIMCVNTLQRD 137
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BLAST of mRNA_P-wetherbeei_contig7781.1.1 vs. uniprot
Match: A0A6H5KH14_9PHAE (B2-adapt-app_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KH14_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 2.840e-43
Identity = 81/97 (83.51%), Postives = 90/97 (92.78%), Query Frame = 1 
Query:   85 SGQPYFVDQKKGEVNELKALLRNINVERDAKKKRDVIKKVIAYMTLGIDVSRLFTEMIMAIETRDLVIKKMVYLYLCTYAHAKPDLAIMCINTLQRD 375
            +G  YFVDQKKGE+NELK LLR ++V+RD KKKR+VIKKVIAYMTLGIDVSRLFTEM++AIETRDLV+KKMVYLYLCTYA  KPDLAIMCINTLQRD
Sbjct:   28 AGGSYFVDQKKGEINELKQLLRAVSVDRDPKKKREVIKKVIAYMTLGIDVSRLFTEMMLAIETRDLVVKKMVYLYLCTYARQKPDLAIMCINTLQRD 124
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BLAST of mRNA_P-wetherbeei_contig7781.1.1 vs. uniprot
Match: A0A4D9CWN1_9STRA (B2-adapt-app_C domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWN1_9STRA)

HSP 1 Score: 157 bits (398), Expect = 2.710e-42
Identity = 78/93 (83.87%), Postives = 87/93 (93.55%), Query Frame = 1 
Query:   97 YFVDQKKGEVNELKALLRNINVERDAKKKRDVIKKVIAYMTLGIDVSRLFTEMIMAIETRDLVIKKMVYLYLCTYAHAKPDLAIMCINTLQRD 375
            YFVD KKGEV+ELK LL+ + VERD K+KRDVIKKVIAYMTLGIDVSRLFTEM++AIETRDLV+KKMVYLYLC YAHAKPDLA+MC+NTLQRD
Sbjct:   28 YFVDTKKGEVSELKQLLKTLAVERDPKRKRDVIKKVIAYMTLGIDVSRLFTEMVLAIETRDLVVKKMVYLYLCNYAHAKPDLALMCVNTLQRD 120
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BLAST of mRNA_P-wetherbeei_contig7781.1.1 vs. uniprot
Match: F0Y5E8_AURAN (Adaptin_N domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5E8_AURAN)

HSP 1 Score: 155 bits (392), Expect = 5.030e-42
Identity = 79/99 (79.80%), Postives = 87/99 (87.88%), Query Frame = 1 
Query:   82 GSGQPYFV-DQKKGEVNELKALLRNINVERDAKKKRDVIKKVIAYMTLGIDVSRLFTEMIMAIETRDLVIKKMVYLYLCTYAHAKPDLAIMCINTLQRD 375
            G G  YF  D KKGEVNELK LLRN+ VERD K+KRDVIKKVIAYMTLGIDVSRLFTEM+M+IETRDLV+KKMVY YLCTYAH KP++ +MCINTLQRD
Sbjct:   15 GQGSSYFQPDSKKGEVNELKTLLRNVGVERDPKRKRDVIKKVIAYMTLGIDVSRLFTEMVMSIETRDLVVKKMVYHYLCTYAHEKPEMGLMCINTLQRD 113
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BLAST of mRNA_P-wetherbeei_contig7781.1.1 vs. uniprot
Match: A0A7S2S4D7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S4D7_9STRA)

HSP 1 Score: 147 bits (371), Expect = 7.240e-39
Identity = 73/97 (75.26%), Postives = 84/97 (86.60%), Query Frame = 1 
Query:   85 SGQPYFVDQKKGEVNELKALLRNINVERDAKKKRDVIKKVIAYMTLGIDVSRLFTEMIMAIETRDLVIKKMVYLYLCTYAHAKPDLAIMCINTLQRD 375
            +G  YF + +KGEVNEL+ LLRN  +ERD K+KRDVIKKVIAYMTLGIDVSRLFTEM++AIETRDLV+KKMVYL+LC YA A PDLA MC NTLQ+D
Sbjct:   30 TGDSYFTESRKGEVNELRQLLRNFTIERDPKRKRDVIKKVIAYMTLGIDVSRLFTEMMLAIETRDLVVKKMVYLFLCNYASANPDLAQMCTNTLQKD 126
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BLAST of mRNA_P-wetherbeei_contig7781.1.1 vs. uniprot
Match: A0A1E7FST4_9STRA (Adaptor protein complex beta subunit (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FST4_9STRA)

HSP 1 Score: 145 bits (367), Expect = 2.450e-38
Identity = 72/93 (77.42%), Postives = 82/93 (88.17%), Query Frame = 1 
Query:   97 YFVDQKKGEVNELKALLRNINVERDAKKKRDVIKKVIAYMTLGIDVSRLFTEMIMAIETRDLVIKKMVYLYLCTYAHAKPDLAIMCINTLQRD 375
            YF + KKGEVNELK LL+N   ERD ++KRD+IKKVIAYMTLGIDVSRLFT+M++AIETRDLVIKKMVYLYLC YAH+ PDLA MC NTLQ+D
Sbjct:   55 YFTESKKGEVNELKVLLKNFATERDPQRKRDIIKKVIAYMTLGIDVSRLFTDMMLAIETRDLVIKKMVYLYLCNYAHSHPDLAQMCTNTLQKD 147
[Close]
BLAST of mRNA_P-wetherbeei_contig7781.1.1 vs. uniprot
Match: A0A7S2SSW9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSW9_9STRA)

HSP 1 Score: 146 bits (368), Expect = 3.090e-38
Identity = 71/93 (76.34%), Postives = 83/93 (89.25%), Query Frame = 1 
Query:   97 YFVDQKKGEVNELKALLRNINVERDAKKKRDVIKKVIAYMTLGIDVSRLFTEMIMAIETRDLVIKKMVYLYLCTYAHAKPDLAIMCINTLQRD 375
            YFVD KKGEVNEL+ALL+N+NVE+D KKKR+ IKKVIAYMTLGIDVSRLF+EM+M +ET+DLV+KKMVYLYL  YA   PD+A+MCINTL RD
Sbjct:   18 YFVDSKKGEVNELRALLKNMNVEKDVKKKRETIKKVIAYMTLGIDVSRLFSEMVMCVETKDLVVKKMVYLYLVNYAQEHPDMALMCINTLHRD 110
[Close]
BLAST of mRNA_P-wetherbeei_contig7781.1.1 vs. uniprot
Match: A0A448ZGC5_9STRA (B2-adapt-app_C domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZGC5_9STRA)

HSP 1 Score: 142 bits (357), Expect = 9.840e-37
Identity = 71/93 (76.34%), Postives = 82/93 (88.17%), Query Frame = 1 
Query:   97 YFVDQKKGEVNELKALLRNINVERDAKKKRDVIKKVIAYMTLGIDVSRLFTEMIMAIETRDLVIKKMVYLYLCTYAHAKPDLAIMCINTLQRD 375
            YF + KKGEVNEL+ LLRN   ER+ K+KRD+IKKVIAYMTLGIDVSRLFTEM++AIETRDLVIKKMVYLYLC YA++ P+LA MC NTLQ+D
Sbjct:   32 YFTESKKGEVNELRNLLRNFATERNPKRKRDIIKKVIAYMTLGIDVSRLFTEMMLAIETRDLVIKKMVYLYLCNYAYSHPELAQMCTNTLQKD 124
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7781.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3HTJ8_9STRA1.770e-4785.87Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S3XUT6_HETAK4.850e-4684.21Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835YU68_9STRA9.600e-4588.17Coatomer protein complex, beta sub-unit n=1 Tax=Tr... [more]
A0A6H5KH14_9PHAE2.840e-4383.51B2-adapt-app_C domain-containing protein n=2 Tax=E... [more]
A0A4D9CWN1_9STRA2.710e-4283.87B2-adapt-app_C domain-containing protein n=2 Tax=M... [more]
F0Y5E8_AURAN5.030e-4279.80Adaptin_N domain-containing protein (Fragment) n=1... [more]
A0A7S2S4D7_9STRA7.240e-3975.26Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A1E7FST4_9STRA2.450e-3877.42Adaptor protein complex beta subunit (Fragment) n=... [more]
A0A7S2SSW9_9STRA3.090e-3876.34Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A448ZGC5_9STRA9.840e-3776.34B2-adapt-app_C domain-containing protein n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7781contigP-wetherbeei_contig7781:310..893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LNY8
Preferred nameAP4B1
PFAMsAdaptin_N,B2-adapt-app_C
Model size375
Max annot lvl2759|Eukaryota
KEGG koko:K12401
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005829,GO:0006605,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0019898,GO:0019899,GO:0019900,GO:0019901,GO:0030117,GO:0030119,GO:0030124,GO:0031090,GO:0031410,GO:0031904,GO:0031974,GO:0031982,GO:0031984,GO:0032588,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043424,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061938,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098791,GO:0098796
Exons2
Evalue4.65e-44
EggNOG OGsCOG5096@1|root,KOG1061@2759|Eukaryota
Descriptionclathrin binding
Cds size375
COG categoryU
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187000.533165-CDS-P-wetherbeei_contig7781:309..4501683187000.533165-CDS-P-wetherbeei_contig7781:309..450Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7781 310..450 +
1683187000.5457892-CDS-P-wetherbeei_contig7781:659..8931683187000.5457892-CDS-P-wetherbeei_contig7781:659..893Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7781 660..893 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7781.1.1prot_P-wetherbeei_contig7781.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7781 310..893 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7781.1.1

>prot_P-wetherbeei_contig7781.1.1 ID=prot_P-wetherbeei_contig7781.1.1|Name=mRNA_P-wetherbeei_contig7781.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=125bp
NASGYPGAGGPGGAAGGPSGAGGPAPTGSGQPYFVDQKKGEVNELKALLR
NINVERDAKKKRDVIKKVIAYMTLGIDVSRLFTEMIMAIETRDLVIKKMV
YLYLCTYAHAKPDLAIMCINTLQRD
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mRNA from alignment at P-wetherbeei_contig7781:310..893+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7781.1.1 ID=mRNA_P-wetherbeei_contig7781.1.1|Name=mRNA_P-wetherbeei_contig7781.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=584bp|location=Sequence derived from alignment at P-wetherbeei_contig7781:310..893+ (Phaeothamnion wetherbeei SAG_119_79)
AACGCAAGCGGATACCCTGGCGCCGGCGGGCCCGGCGGCGCGGCCGGCGG
GCCAAGCGGGGCCGGAGGCCCTGCTCCCACCGGATCCGGGCAGCCTTACT
TTGTGGACCAAAAGAAAGGCGAGGTCAACGAACTCAAAGCGGTGAGTCGA
AAAGCATCTGTCTTGCATCCCTCAAACCACGGTGGACTGCCTGCTCCGGG
AATATTTTGTGTCACCGGACGGCCCAAATGAACTCTTTTTGCTTTTTTGA
GGGATAATATTTTTCTCACAACAGCGTCTGCTCCCTCGCCAGCTTGTCTC
TTACCTTTCCATCCCTCTTCCCGTCGCTCGCACACTCACCAACACAACAG
CTGCTGCGCAACATCAACGTGGAGCGGGACGCGAAGAAGAAGCGCGACGT
GATCAAGAAGGTCATCGCCTACATGACTCTCGGGATCGATGTGTCGCGCC
TCTTCACCGAGATGATCATGGCCATCGAGACGCGGGATCTGGTCATCAAG
AAGATGGTCTACCTCTACCTGTGCACCTACGCCCACGCCAAGCCCGACCT
GGCCATCATGTGCATCAACACGCTGCAGCGCGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7781:310..893+

>mRNA_P-wetherbeei_contig7781.1.1 ID=mRNA_P-wetherbeei_contig7781.1.1|Name=mRNA_P-wetherbeei_contig7781.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig7781:310..893+ (Phaeothamnion wetherbeei SAG_119_79)
AACGCAAGCGGATACCCTGGCGCCGGCGGGCCCGGCGGCGCGGCCGGCGG
GCCAAGCGGGGCCGGAGGCCCTGCTCCCACCGGATCCGGGCAGCCTTACT
TTGTGGACCAAAAGAAAGGCGAGGTCAACGAACTCAAAGCGCTGCTGCGC
AACATCAACGTGGAGCGGGACGCGAAGAAGAAGCGCGACGTGATCAAGAA
GGTCATCGCCTACATGACTCTCGGGATCGATGTGTCGCGCCTCTTCACCG
AGATGATCATGGCCATCGAGACGCGGGATCTGGTCATCAAGAAGATGGTC
TACCTCTACCTGTGCACCTACGCCCACGCCAAGCCCGACCTGGCCATCAT
GTGCATCAACACGCTGCAGCGCGAC
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