mRNA_P-wetherbeei_contig7774.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig7774.1.1 vs. uniprot
Match: S0F301_CHOCR (RNA-dependent DNA polymerase n=1 Tax=Chondrus crispus TaxID=2769 RepID=S0F301_CHOCR) HSP 1 Score: 90.9 bits (224), Expect = 1.130e-18 Identity = 52/132 (39.39%), Postives = 78/132 (59.09%), Query Frame = 3
Query: 6 MRFIFALAAEFDFEVHQMDVVTAYLNAPLTDLLWMRVPPGPFD-FEDCAALQLLKAIYGLKQAAYLWHLCLRSWLLSD-GFRAVDADCCVFVRGDVSPVMAAGGKGTYLVVGIHVDDLLAAGAPTSAIAGFK 395
+R + AL A FD E+HQMDVVTA+LN L + ++M P G D + + +LLKAIYGLKQA WH + +L+++ GF +D C+++R + +M ++ ++VDDLL AG+ AI K
Sbjct: 940 IRLLLALVAHFDLELHQMDVVTAFLNGDLHEEIYMEQPEGCIDKVKPDSVCKLLKAIYGLKQAHRQWHSKIDEFLITELGFNTTRSDPCLYIRRQGNVIM---------IIALYVDDLLLAGSDLEAILWMK 1062
BLAST of mRNA_P-wetherbeei_contig7774.1.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT) HSP 1 Score: 88.6 bits (218), Expect = 7.250e-18 Identity = 48/119 (40.34%), Postives = 76/119 (63.87%), Query Frame = 3
Query: 3 AMRFIFALAAEFDFEVHQMDVVTAYLNAPLTDLLWMRVPPGPFDFEDCAAL-QLLKAIYGLKQAAYLWHLCLRSWLLSDGFRAVDADCCVFVRGDVSPVMAAGGKGTYLVVGIHVDDLL 356
++R + ALA D+E+HQMDV TA+L LTD ++M+ P G E+ + +L K++YGLKQ+A W+ L S+L S G++ V AD C++++ V GK ++++ IHVDD+L
Sbjct: 925 SIRSLLALANILDWEIHQMDVRTAFLQGDLTDEIYMKQPEGYRSKENPDHVCKLKKSLYGLKQSARCWNSTLDSFLKSSGYKQVGADSCLYMKS----VKLQNGKINFVILSIHVDDIL 1039
BLAST of mRNA_P-wetherbeei_contig7774.1.1 vs. uniprot
Match: A0A094GNV2_9PEZI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Pseudogymnoascus sp. VKM F-4519 (FW-2642) TaxID=1420914 RepID=A0A094GNV2_9PEZI) HSP 1 Score: 88.6 bits (218), Expect = 7.280e-18 Identity = 55/132 (41.67%), Postives = 77/132 (58.33%), Query Frame = 3
Query: 3 AMRFIFALAAEFDFEVHQMDVVTAYLNAPLTDLLWMRVPPGPFDFED-CAALQLLKAIYGLKQAAYLWHLCLRSWLLSDGFRAVDADCCVFVRGDVSPVMAAGGKGTYLVVGIHVDDLLAAGAPTSAIAGFK 395
A+R + ALAA FD+E+ QMD VTA+LN+ L + +W+++P G +E+ A +L K +YGLKQAA LW L +R L G++ + AD C++ KG Y V HVDD L GA +AI K
Sbjct: 1031 AIRILIALAAHFDWEIEQMDAVTAFLNSRLDENVWIQLPTG---YENGTRACRLKKGLYGLKQAARLWALEVRKLLRELGYQMIPADECLYWHPK---------KGVY--VATHVDDFLVLGADINAIQELK 1148
BLAST of mRNA_P-wetherbeei_contig7774.1.1 vs. uniprot
Match: A0A177TJ72_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tilletia caries TaxID=13290 RepID=A0A177TJ72_9BASI) HSP 1 Score: 88.2 bits (217), Expect = 9.480e-18 Identity = 54/134 (40.30%), Postives = 75/134 (55.97%), Query Frame = 3
Query: 6 MRFIFALAAEFDFEVHQMDVVTAYLNAPLTDLLWMRVPPGPFDFEDCAALQLL----KAIYGLKQAAYLWHLCLRSWLLSDGFRAVDADCCVFVRGDVSPVMAAGGKGTYLVVGIHVDDLLAAGAPTSAIAGFK 395
+R + ALAA FD+ VHQ+DVVTAYL L+D+++MR PPG FE + LL +A+YGLKQ+ W+ LRS L+ GF D +F+ G + T L+V ++VDD+L I FK
Sbjct: 383 IRTLLALAAHFDWHVHQLDVVTAYLYGLLSDVVYMRQPPG---FEKVGSEHLLCRLRRALYGLKQSGREWYFTLRSALIELGFEQSTVDPAIFIFGTGA---------TALIVAVYVDDVLVLSKSIEDIKAFK 504
BLAST of mRNA_P-wetherbeei_contig7774.1.1 vs. uniprot
Match: A5DZY5_LODEL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) TaxID=379508 RepID=A5DZY5_LODEL) HSP 1 Score: 87.0 bits (214), Expect = 2.370e-17 Identity = 55/132 (41.67%), Postives = 78/132 (59.09%), Query Frame = 3
Query: 3 AMRFIFALAAEFDFEVHQMDVVTAYLNAPLTDLLWMRVPPGPFDFEDCA----ALQLLKAIYGLKQAAYLWHLCLRSWLLSDGFRAVDADCCVFVR-GDVSPVMAAGGKGTYLVVGIHVDDLLAAGAPTSAI 383
+MR + ALAA E+HQMDV TA+LNAPL + ++M+ G +ED A +L K++YGLKQA W+L + LL+ GF+ A+ C+++R S VM A ++VDDLL AG+P AI
Sbjct: 523 SMRIMLALAAHARMEIHQMDVTTAFLNAPLEEEIYMKQIEG---YEDPAFPDKVFKLNKSLYGLKQAPQAWNLQIHDVLLALGFQRNQAEYCLYIRRSSASTVMVA----------LYVDDLLIAGSPRRAI 641
BLAST of mRNA_P-wetherbeei_contig7774.1.1 vs. uniprot
Match: A0A7D9ESN8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9ESN8_PARCT) HSP 1 Score: 86.7 bits (213), Expect = 3.420e-17 Identity = 47/119 (39.50%), Postives = 77/119 (64.71%), Query Frame = 3
Query: 3 AMRFIFALAAEFDFEVHQMDVVTAYLNAPLTDLLWMRVPPGPFDFEDCAAL-QLLKAIYGLKQAAYLWHLCLRSWLLSDGFRAVDADCCVFVRGDVSPVMAAGGKGTYLVVGIHVDDLL 356
++R + ALA E+D EVHQMDV TA+LN + ++M+ P G + + L +L K+IYGLKQ+A W+ L +L S G+R AD C++V+ V GG+ +++++G++VDD++
Sbjct: 956 SLRTLLALANEYDLEVHQMDVRTAFLNGDIDCDIYMQQPEGFVNPDKPDYLCKLQKSIYGLKQSARCWNDTLNGYLKSRGYRKSGADGCIYVKS----VKKDGGRISFVILGVYVDDII 1070
BLAST of mRNA_P-wetherbeei_contig7774.1.1 vs. uniprot
Match: A0A7D9KZC9_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KZC9_PARCT) HSP 1 Score: 85.9 bits (211), Expect = 4.180e-17 Identity = 47/118 (39.83%), Postives = 75/118 (63.56%), Query Frame = 3
Query: 6 MRFIFALAAEFDFEVHQMDVVTAYLNAPLTDLLWMRVPPGPFDFEDCAAL-QLLKAIYGLKQAAYLWHLCLRSWLLSDGFRAVDADCCVFVRGDVSPVMAAGGKGTYLVVGIHVDDLL 356
+R + ALA E+D EVHQMDV TA+LN + ++M P G D + L +L K+IYGLKQ+A W+ L +L S G+R AD C++V+ V GG+ +++++G+++DD++
Sbjct: 75 LRTLLALANEYDLEVHQMDVRTAFLNGDIDCDIYMEQPEGFVDPDKPDYLCKLQKSIYGLKQSARCWNDTLDGYLKSRGYRKSGADGCIYVKS----VKKDGGRISFVILGVYMDDII 188
BLAST of mRNA_P-wetherbeei_contig7774.1.1 vs. uniprot
Match: A0A7D9LDA1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LDA1_PARCT) HSP 1 Score: 85.9 bits (211), Expect = 5.530e-17 Identity = 47/119 (39.50%), Postives = 77/119 (64.71%), Query Frame = 3
Query: 3 AMRFIFALAAEFDFEVHQMDVVTAYLNAPLTDLLWMRVPPGPFDFEDCAAL-QLLKAIYGLKQAAYLWHLCLRSWLLSDGFRAVDADCCVFVRGDVSPVMAAGGKGTYLVVGIHVDDLL 356
++R + ALA E+D EVHQMDV TA+LN + ++M+ P G + + L +L K+IYGLKQ+A W+ L +L S G+R AD C++V+ V GG+ +++++G++VDD++
Sbjct: 111 SLRTLLALANEYDLEVHQMDVRTAFLNGDIDCDIYMQQPEGFVNPDKPDYLCKLQKSIYGLKQSARCWNDTLDGYLKSRGYRKSGADGCIYVKS----VKKDGGRISFVILGVYVDDII 225
BLAST of mRNA_P-wetherbeei_contig7774.1.1 vs. uniprot
Match: A0A7D9I9A2_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9I9A2_PARCT) HSP 1 Score: 85.9 bits (211), Expect = 6.210e-17 Identity = 47/119 (39.50%), Postives = 77/119 (64.71%), Query Frame = 3
Query: 3 AMRFIFALAAEFDFEVHQMDVVTAYLNAPLTDLLWMRVPPGPFDFEDCAAL-QLLKAIYGLKQAAYLWHLCLRSWLLSDGFRAVDADCCVFVRGDVSPVMAAGGKGTYLVVGIHVDDLL 356
++R + ALA E+D EVHQMDV TA+LN + ++M+ P G + + L +L K+IYGLKQ+A W+ L +L S G+R AD C++V+ V GG+ +++++G++VDD++
Sbjct: 500 SLRTLLALANEYDLEVHQMDVRTAFLNGDIDCDIYMQQPEGFVNPDKPDYLCKLQKSIYGLKQSARCWNDTLDGYLKSRGYRKSGADGCIYVKS----VKKDGGRISFVILGVYVDDII 614
BLAST of mRNA_P-wetherbeei_contig7774.1.1 vs. uniprot
Match: A0A177T395_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177T395_9BASI) HSP 1 Score: 84.7 bits (208), Expect = 1.590e-16 Identity = 52/134 (38.81%), Postives = 75/134 (55.97%), Query Frame = 3
Query: 6 MRFIFALAAEFDFEVHQMDVVTAYLNAPLTDLLWMRVPPGPFDFEDCAA----LQLLKAIYGLKQAAYLWHLCLRSWLLSDGFRAVDADCCVFVRGDVSPVMAAGGKGTYLVVGIHVDDLLAAGAPTSAIAGFK 395
+R + ALAA F++ VHQ+DVVTAYL L+D+++MR PPG FE + +L +A+YGLKQ+ W+ LRS L+ GF D +F+ G + + LVV ++VDD+L I FK
Sbjct: 693 IRTLLALAAHFEWHVHQLDVVTAYLYGLLSDVVYMRQPPG---FEKVGSEHLYCRLRRALYGLKQSGREWYFTLRSALIELGFEQSTVDPAIFIFGSGA---------SALVVAVYVDDVLVLSKSIDDIEAFK 814 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7774.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig7774.1.1 >prot_P-wetherbeei_contig7774.1.1 ID=prot_P-wetherbeei_contig7774.1.1|Name=mRNA_P-wetherbeei_contig7774.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp MRFIFALAAEFDFEVHQMDVVTAYLNAPLTDLLWMRVPPGPFDFEDCAALback to top mRNA from alignment at P-wetherbeei_contig7774:40..434+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig7774.1.1 ID=mRNA_P-wetherbeei_contig7774.1.1|Name=mRNA_P-wetherbeei_contig7774.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=395bp|location=Sequence derived from alignment at P-wetherbeei_contig7774:40..434+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig7774:40..434+ >mRNA_P-wetherbeei_contig7774.1.1 ID=mRNA_P-wetherbeei_contig7774.1.1|Name=mRNA_P-wetherbeei_contig7774.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig7774:40..434+ (Phaeothamnion wetherbeei SAG_119_79)back to top |