mRNA_P-wetherbeei_contig7748.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7748.1.1
Unique NamemRNA_P-wetherbeei_contig7748.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7748.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7748contigP-wetherbeei_contig7748:209..1736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1272
Hectar predicted targeting categorymitochondrion
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_003870.1
Cds size1269
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186998.933332-CDS-P-wetherbeei_contig7748:209..11121683186998.933332-CDS-P-wetherbeei_contig7748:209..1112Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7748 210..1112 -
1683186998.9445019-CDS-P-wetherbeei_contig7748:1370..17361683186998.9445019-CDS-P-wetherbeei_contig7748:1370..1736Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7748 1371..1736 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7748.1.1prot_P-wetherbeei_contig7748.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7748 210..1736 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7748.1.1

>prot_P-wetherbeei_contig7748.1.1 ID=prot_P-wetherbeei_contig7748.1.1|Name=mRNA_P-wetherbeei_contig7748.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=423bp
AAWARAKARASTAAGPVKLPPSLRALLLPPCRLRCLPHRTARLTDCAGLE
AFPLLSLGQGAGTAATASGTASVASTTSMVLGDKGSLEDVRGMWTARVGP
CALVPVTMLVENRSSSATLCLQVEVMARPCLPGPDGNAAAAVAAANASGS
AAAALDLGAYGVVPAPQEVAEDAHYGGGGGSGANGGGILWSGVLSKVLPP
IPPGGAAAHTVVACLLEVGEYVIGFRCVDVGASRGGGGGDGGTAASAAAP
AVAAAATMAGAAYGEQPPWWQEVWCAQPLIVVVSEEGIPESEGGGVRGQS
SRSVEISRAFPRPPTLTAAALKMPPALDSDAASHGGGSGGGGGSSSVGAV
DGGSMSTADGASEEGASAGASERNVSDNVGGPNDSPKSSASPSGLFHMRS
GSGSSMRLPWSASGHGSPRSSSS
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mRNA from alignment at P-wetherbeei_contig7748:209..1736-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7748.1.1 ID=mRNA_P-wetherbeei_contig7748.1.1|Name=mRNA_P-wetherbeei_contig7748.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1528bp|location=Sequence derived from alignment at P-wetherbeei_contig7748:209..1736- (Phaeothamnion wetherbeei SAG_119_79)
GCGGCGTGGGCGCGGGCGAAGGCCCGTGCCAGCACTGCGGCGGGGCCGGT
CAAGCTGCCTCCCTCGCTACGCGCGCTGCTCCTGCCGCCGTGCCGCCTCC
GCTGCCTGCCGCACCGGACGGCCCGCCTCACCGACTGCGCCGGGCTGGAA
GCCTTCCCGCTGCTATCGTTGGGCCAAGGGGCTGGCACGGCGGCGACGGC
ATCGGGAACAGCGTCGGTGGCTTCGACGACTTCGATGGTGCTCGGCGACA
AAGGCAGTTTGGAAGACGTTCGGGGGATGTGGACGGCGCGTGTGGGCCCC
TGTGCGCTCGTGCCAGTGACGATGCTCGTGGAGAACCGCTCGTCGTCGGC
GACCCTCTGCCTGCAGGTGAGCAAGGCTCCTTTAGAGATCAAATGTAAGT
AGCCGGGCTGGTTGGGGCTGTACTTACAGTGTTGTGACGCTCAACTGGTA
CGTCCTCATAGTTCGTGAATCTTGATTATGTCGCGAACTTCCGTAAGTTC
TTGTTTTCAACTGTTCTTGTTACAAGGGTATTGAAGCGAAGTAGATATTT
CTTGTTGTGCCGTGGCTTTTTGCTGCGCATGGCCTGACGCTTTGTTCCCC
TTTTTGCGCTCCCACGGTTTCTAGGTCGAGGTGATGGCGCGCCCTTGCCT
GCCGGGCCCCGATGGCAACGCCGCCGCCGCGGTGGCCGCCGCGAACGCGT
CGGGGTCTGCAGCGGCCGCACTAGACCTGGGGGCGTACGGCGTCGTCCCA
GCCCCCCAAGAGGTGGCCGAGGATGCGCATTATGGCGGCGGCGGCGGCAG
CGGTGCCAACGGCGGCGGGATCCTGTGGTCCGGCGTGCTGTCCAAGGTGC
TGCCGCCAATCCCGCCGGGCGGCGCGGCGGCGCACACGGTCGTTGCGTGC
CTCTTGGAGGTCGGCGAGTACGTGATAGGCTTCCGCTGCGTTGACGTTGG
CGCCTCACGCGGCGGGGGCGGTGGCGATGGCGGAACGGCAGCCTCGGCGG
CAGCGCCGGCGGTGGCAGCAGCGGCAACGATGGCAGGGGCGGCTTATGGA
GAGCAGCCGCCGTGGTGGCAGGAGGTTTGGTGCGCCCAGCCGCTGATAGT
GGTTGTCTCCGAGGAGGGCATTCCCGAGAGCGAAGGCGGCGGAGTTCGCG
GCCAGTCTAGCAGGTCCGTCGAGATCTCCCGTGCTTTCCCTAGGCCGCCG
ACGCTGACGGCGGCGGCGCTAAAGATGCCGCCAGCCCTCGATAGCGATGC
GGCCAGCCACGGAGGCGGGAGCGGCGGTGGCGGCGGCAGCAGCAGTGTCG
GCGCTGTCGATGGCGGGAGCATGAGTACTGCCGACGGTGCTAGTGAAGAA
GGTGCCAGTGCCGGCGCCAGCGAGCGCAATGTCAGCGACAATGTCGGCGG
GCCGAACGACTCGCCAAAGAGTTCCGCCTCGCCGTCGGGGCTCTTTCACA
TGCGGAGCGGCAGCGGCAGCTCCATGCGGCTGCCGTGGTCGGCGTCGGGC
CACGGGAGCCCGCGATCGTCCTCCTCTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7748:209..1736-

>mRNA_P-wetherbeei_contig7748.1.1 ID=mRNA_P-wetherbeei_contig7748.1.1|Name=mRNA_P-wetherbeei_contig7748.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1269bp|location=Sequence derived from alignment at P-wetherbeei_contig7748:209..1736- (Phaeothamnion wetherbeei SAG_119_79)
GCGGCGTGGGCGCGGGCGAAGGCCCGTGCCAGCACTGCGGCGGGGCCGGT
CAAGCTGCCTCCCTCGCTACGCGCGCTGCTCCTGCCGCCGTGCCGCCTCC
GCTGCCTGCCGCACCGGACGGCCCGCCTCACCGACTGCGCCGGGCTGGAA
GCCTTCCCGCTGCTATCGTTGGGCCAAGGGGCTGGCACGGCGGCGACGGC
ATCGGGAACAGCGTCGGTGGCTTCGACGACTTCGATGGTGCTCGGCGACA
AAGGCAGTTTGGAAGACGTTCGGGGGATGTGGACGGCGCGTGTGGGCCCC
TGTGCGCTCGTGCCAGTGACGATGCTCGTGGAGAACCGCTCGTCGTCGGC
GACCCTCTGCCTGCAGGTCGAGGTGATGGCGCGCCCTTGCCTGCCGGGCC
CCGATGGCAACGCCGCCGCCGCGGTGGCCGCCGCGAACGCGTCGGGGTCT
GCAGCGGCCGCACTAGACCTGGGGGCGTACGGCGTCGTCCCAGCCCCCCA
AGAGGTGGCCGAGGATGCGCATTATGGCGGCGGCGGCGGCAGCGGTGCCA
ACGGCGGCGGGATCCTGTGGTCCGGCGTGCTGTCCAAGGTGCTGCCGCCA
ATCCCGCCGGGCGGCGCGGCGGCGCACACGGTCGTTGCGTGCCTCTTGGA
GGTCGGCGAGTACGTGATAGGCTTCCGCTGCGTTGACGTTGGCGCCTCAC
GCGGCGGGGGCGGTGGCGATGGCGGAACGGCAGCCTCGGCGGCAGCGCCG
GCGGTGGCAGCAGCGGCAACGATGGCAGGGGCGGCTTATGGAGAGCAGCC
GCCGTGGTGGCAGGAGGTTTGGTGCGCCCAGCCGCTGATAGTGGTTGTCT
CCGAGGAGGGCATTCCCGAGAGCGAAGGCGGCGGAGTTCGCGGCCAGTCT
AGCAGGTCCGTCGAGATCTCCCGTGCTTTCCCTAGGCCGCCGACGCTGAC
GGCGGCGGCGCTAAAGATGCCGCCAGCCCTCGATAGCGATGCGGCCAGCC
ACGGAGGCGGGAGCGGCGGTGGCGGCGGCAGCAGCAGTGTCGGCGCTGTC
GATGGCGGGAGCATGAGTACTGCCGACGGTGCTAGTGAAGAAGGTGCCAG
TGCCGGCGCCAGCGAGCGCAATGTCAGCGACAATGTCGGCGGGCCGAACG
ACTCGCCAAAGAGTTCCGCCTCGCCGTCGGGGCTCTTTCACATGCGGAGC
GGCAGCGGCAGCTCCATGCGGCTGCCGTGGTCGGCGTCGGGCCACGGGAG
CCCGCGATCGTCCTCCTCT
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