mRNA_P-wetherbeei_contig7744.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7744.1.1
Unique NamemRNA_P-wetherbeei_contig7744.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7744.1.1 vs. uniprot
Match: D7FQN8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQN8_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 1.280e-17
Identity = 58/139 (41.73%), Postives = 86/139 (61.87%), Query Frame = 2 
Query:  695 PPA--HPLDDIRALLAAGRVNEAIDKALAASEVRMVVWTCRQLDHSAVPRHLSQGALLCLLSQL-STDLPLDAATKLLWLQGCALALRTGDSTIAQFVPAVLRQVRTALEEAAPEIRAEGPHAASTLSLLSHVITSLQS 1102
            PPA   P +++  L+ AGRV++A+++AL+AS++ +V+W C +LD  A P  L Q  LLCL+ Q  ++DL  D   KL WLQ C LA+   ++TI   +P VLRQ++ AL  + P I   G    S + L +HV+ SL S
Sbjct: 1662 PPAAVDPREELHRLVGAGRVDDAMNRALSASDLPLVMWLCGRLDPVATPSTLPQHILLCLVQQFGASDLLEDTTAKLKWLQNCVLAIDPTEATIRAHLPVVLRQLKGALTTSTPIISQRGGTDVSVVRLTTHVVNSLAS 1800
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BLAST of mRNA_P-wetherbeei_contig7744.1.1 vs. uniprot
Match: A0A7S3UC78_9CHLO (Hypothetical protein n=2 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UC78_9CHLO)

HSP 1 Score: 75.9 bits (185), Expect = 1.590e-10
Identity = 48/134 (35.82%), Postives = 72/134 (53.73%), Query Frame = 2 
Query:  707 PLDDIRALLAAGRVNEAIDKALAASEVRMVVWTCRQLDHSAV----PRHLSQGALLCLLSQLSTDLPLDAATKLLWLQGCALALRTGDSTIAQFVPAVLRQVRTALEEAAPEIRAEGPHAASTLSLLSHVITSL 1096
            P  +++ L+ A +  EA +K L+  +V  VVW C+Q+D +A+    P  LSQG LL L+ QLSTDL  D   KL W+Q  ALAL   D  ++  +  +L+    AL      +R      A  + L+ H++ SL
Sbjct:  822 PTIELKGLVEARKYEEAYNKVLSLGDVETVVWLCKQVDATAIFNFTPPLLSQGVLLSLMQQLSTDLQKDTTLKLSWIQNTALALDPQDPVLSVHMRPILQSTFVALNN---RLRTARSGEAGQIKLVIHLMNSL 952
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BLAST of mRNA_P-wetherbeei_contig7744.1.1 vs. uniprot
Match: A9RBG7_PHYPA (Ge1_WD40 domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9RBG7_PHYPA)

HSP 1 Score: 72.8 bits (177), Expect = 1.540e-9
Identity = 52/138 (37.68%), Postives = 72/138 (52.17%), Query Frame = 2 
Query:  707 PLDDIRALLAAGRVNEAIDKALAASEVRMVVWTCRQLDH----SAVPRHLSQGALLCLLSQLSTDLPLDAATKLLWLQGCALALRTGDSTIAQFVPAVLRQ-VRTALEEAAPEIRAEGPHAASTLSLLSHVITSLQSN 1105
            P  +I  LL  G + EA +KAL A ++++V W C QLD     SA P  +SQG LL L+ QLS+DL  D   KL W++   LAL   DS +   +   L Q     + + +     + P    TL L+ HVI SL S+
Sbjct: 1018 PTIEIGRLLHGGMMEEAFNKALTAGDLQVVFWLCNQLDPVSLLSAEPLPVSQGVLLSLVQQLSSDLSKDTGQKLRWIKEATLALNPKDSVLGPHMHYFLEQSYHNCVHQMSVS---KDPSEQVTLKLVIHVINSLLSS 1152
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BLAST of mRNA_P-wetherbeei_contig7744.1.1 vs. uniprot
Match: A0A7I4DBZ0_PHYPA (Ge1_WD40 domain-containing protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4DBZ0_PHYPA)

HSP 1 Score: 72.8 bits (177), Expect = 1.680e-9
Identity = 52/138 (37.68%), Postives = 72/138 (52.17%), Query Frame = 2 
Query:  707 PLDDIRALLAAGRVNEAIDKALAASEVRMVVWTCRQLDH----SAVPRHLSQGALLCLLSQLSTDLPLDAATKLLWLQGCALALRTGDSTIAQFVPAVLRQ-VRTALEEAAPEIRAEGPHAASTLSLLSHVITSLQSN 1105
            P  +I  LL  G + EA +KAL A ++++V W C QLD     SA P  +SQG LL L+ QLS+DL  D   KL W++   LAL   DS +   +   L Q     + + +     + P    TL L+ HVI SL S+
Sbjct: 1438 PTIEIGRLLHGGMMEEAFNKALTAGDLQVVFWLCNQLDPVSLLSAEPLPVSQGVLLSLVQQLSSDLSKDTGQKLRWIKEATLALNPKDSVLGPHMHYFLEQSYHNCVHQMSVS---KDPSEQVTLKLVIHVINSLLSS 1572
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BLAST of mRNA_P-wetherbeei_contig7744.1.1 vs. uniprot
Match: A0A096P9F9_OSTTA (WD40/YVTN repeat-like-containing domain n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A096P9F9_OSTTA)

HSP 1 Score: 65.9 bits (159), Expect = 1.940e-7
Identity = 50/139 (35.97%), Postives = 74/139 (53.24%), Query Frame = 2 
Query:  707 PLDDIRALLAAGRVNEAIDKALAASEVRMVVWTCRQLDHSAV----PRHLSQGALLCLLSQLSTDLPL-DAATKLLWLQGCALALRTGDSTIAQFVPAVLRQVRTALEEAAPEIRAEGPHAASTLSLLSHVITSLQSNV 1108
            P  +I  LL A +++ A + AL+ S+V +V+W   Q+    +    P  LSQG LL L+ QLS+DL   DA TKL W++   LA+   D ++ Q +  VL  V  AL  AA    A  P   +   L  HV+ S+ S++
Sbjct:  720 PTAEIGKLLQANQIDRAFNVALSMSKVEVVMWLITQVASDRIFGQNPCPLSQGVLLSLVQQLSSDLATPDARTKLDWIRDSCLAIDPADPSLRQHMRPVLSGVHQALM-AASNSPASAPDVRAGTRLCIHVVNSMLSSL 857
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BLAST of mRNA_P-wetherbeei_contig7744.1.1 vs. uniprot
Match: A4RTM4_OSTLU (Transducin / WD-40 repeat protein, putative n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4RTM4_OSTLU)

HSP 1 Score: 61.6 bits (148), Expect = 4.030e-6
Identity = 50/145 (34.48%), Postives = 74/145 (51.03%), Query Frame = 2 
Query:  707 PLDDIRALLAAGRVNEAIDKALAASEVRMVVWTCRQLDHSAV----PRHLSQGALLCLLSQLSTDLPL-DAATKLLWLQGCALALRTGDSTIAQFVPAVLRQVRTALEEAA------PEIRAEGPHAASTLSLLSHVITSLQSNV 1108
            P  +I  LL A +++ A + AL+ S+V +V+W   Q+    +    P  LSQG LL L+ QLS+DL   DA  KL W++   LA+   D  + Q +  VL  V  +L  AA      PE+RA          L  HV+ S+ S++
Sbjct:  739 PTVEISKLLQANQIDRAFNLALSMSKVEVVMWLVNQVASDRIFGQTPCPLSQGVLLSLVQQLSSDLTTPDAPKKLDWIRDSCLAVDPADPVLRQHMRPVLSTVHQSLMAAANSPTSAPEVRAG-------TRLCIHVVNSMLSSL 876
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BLAST of mRNA_P-wetherbeei_contig7744.1.1 vs. uniprot
Match: UPI001CF30A5E (enhancer of mRNA-decapping protein 4-like isoform X1 n=4 Tax=Acropora TaxID=6127 RepID=UPI001CF30A5E)

HSP 1 Score: 61.2 bits (147), Expect = 6.040e-6
Identity = 38/108 (35.19%), Postives = 62/108 (57.41%), Query Frame = 2 
Query:  719 IRALLAAGRVNEAIDKALAASEVRMVVWTCRQLDHSAV----PRHLSQGALLCLLSQLSTDLPLDAATKLLWLQGCALALRTGDSTIAQFVPAVL----RQVRTALEE 1018
            +  LL +GR+ EA  +AL AS++R+VV+ C  +D   V    P  LSQ  LL L+ QLS DL +D   K  +++   +AL   +    + +P VL    +Q+++A++E
Sbjct: 1273 VSKLLESGRIGEAFQEALTASDLRIVVYVCETVDTDTVFSQTPCPLSQPVLLSLIQQLSVDLTVDTELKHKYIEEALMALDVTNEVTREHMPGVLEVLCQQLQSAIQE 1380
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BLAST of mRNA_P-wetherbeei_contig7744.1.1 vs. uniprot
Match: A0A7S0Z9P9_9CHLO (Hypothetical protein n=2 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0Z9P9_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 3.420e-5
Identity = 45/122 (36.89%), Postives = 64/122 (52.46%), Query Frame = 2 
Query:  707 PLDDIRALLAAGRVNEAIDKALAASEVRMVVWTCRQLDHSAV----PRHLSQGALLCLLSQLSTDLPL-DAATKLLWLQGCALALRTGDSTIAQFVPAVLRQVRTAL------EEAAPEIRA 1039
            P  +I  LL + +V++A + AL+ S V +V+W   QL    +    P  LSQG LL L+ QLST+L   DA  KL W++   LA+   +  +   +  VL  V  AL        AAPE+RA
Sbjct:  237 PTVEIGKLLQSNQVDKAFNFALSLSNVEVVMWLVNQLSSDRIFAQTPCPLSQGVLLSLVQQLSTNLNTPDAPKKLDWIRDACLAVDPANPAMKAHMKPVLSAVHQALMAAANSPSAAPEVRA 358
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7744.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FQN8_ECTSI1.280e-1741.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3UC78_9CHLO1.590e-1035.82Hypothetical protein n=2 Tax=Picocystis salinarum ... [more]
A9RBG7_PHYPA1.540e-937.68Ge1_WD40 domain-containing protein n=1 Tax=Physcom... [more]
A0A7I4DBZ0_PHYPA1.680e-937.68Ge1_WD40 domain-containing protein n=3 Tax=Physcom... [more]
A0A096P9F9_OSTTA1.940e-735.97WD40/YVTN repeat-like-containing domain n=2 Tax=Os... [more]
A4RTM4_OSTLU4.030e-634.48Transducin / WD-40 repeat protein, putative n=2 Ta... [more]
UPI001CF30A5E6.040e-635.19enhancer of mRNA-decapping protein 4-like isoform ... [more]
A0A7S0Z9P9_9CHLO3.420e-536.89Hypothetical protein n=2 Tax=Ostreococcus mediterr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7744contigP-wetherbeei_contig7744:2..2567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQN8
PFAMsGe1_WD40
Model size1913
Max annot lvl2759|Eukaryota
KEGG koko:K08592,ko:K12616
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.45e-21
EggNOG OGsKOG1916@1|root,KOG1916@2759|Eukaryota
EC3.4.22.68
Descriptiondeadenylation-independent decapping of nuclear-transcribed mRNA
Cds size480
COG categoryO
BRITEko00000,ko00001,ko01000,ko01002,ko03019,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7744.1.1prot_P-wetherbeei_contig7744.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7744 792..1854 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186998.7104063-UTR-P-wetherbeei_contig7744:1..7911683186998.7104063-UTR-P-wetherbeei_contig7744:1..791Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7744 2..791 -
1683186998.7638295-UTR-P-wetherbeei_contig7744:1854..21481683186998.7638295-UTR-P-wetherbeei_contig7744:1854..2148Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7744 1855..2148 -
1683186998.7759173-UTR-P-wetherbeei_contig7744:2218..25671683186998.7759173-UTR-P-wetherbeei_contig7744:2218..2567Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7744 2219..2567 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186998.7301025-CDS-P-wetherbeei_contig7744:791..9171683186998.7301025-CDS-P-wetherbeei_contig7744:791..917Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7744 792..917 -
1683186998.7384877-CDS-P-wetherbeei_contig7744:1210..14411683186998.7384877-CDS-P-wetherbeei_contig7744:1210..1441Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7744 1211..1441 -
1683186998.7501323-CDS-P-wetherbeei_contig7744:1731..18541683186998.7501323-CDS-P-wetherbeei_contig7744:1731..1854Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7744 1732..1854 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7744.1.1

>prot_P-wetherbeei_contig7744.1.1 ID=prot_P-wetherbeei_contig7744.1.1|Name=mRNA_P-wetherbeei_contig7744.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=160bp
MPQQQQQQQPPPPPPASPPAHPLDDIRALLAAGRVNEAIDKALAASEVRM
VVWTCRQLDHSAVPRHLSQGALLCLLSQLSTDLPLDAATKLLWLQGCALA
LRTGDSTIAQFVPAVLRQVRTALEEAAPEIRAEGPHAASTLSLLSHVITS
LQSNVESGR*
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mRNA from alignment at P-wetherbeei_contig7744:2..2567-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7744.1.1 ID=mRNA_P-wetherbeei_contig7744.1.1|Name=mRNA_P-wetherbeei_contig7744.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2566bp|location=Sequence derived from alignment at P-wetherbeei_contig7744:2..2567- (Phaeothamnion wetherbeei SAG_119_79)
CGGCGACCGCGGCGGCGACCGCGGCCGTCGAGGCGGTTGTGGCGGCGGGG
GGGCTCGGCAGCGGCAACGATGGTGGTGCCAATGCCGAGGCAGCGACGGC
AATGGCGACAGCGGCGGCGGAGCGGGCGGCGCGGGACGCGGCGGAGGTGC
GGGGGGAGCTGGCGCAGCTGTTGGCGGTGGTAAACGCGCTCTCGACGCAG
GTGGCGCTGCTGAACCGGTCGGTGGAGCGGATGGCGACTATGACAGCGGC
GCAGGCCAAGGCGATGGCGGCGCAAGCGGAGCAGCAGCAGCAGCTGCAGG
CCACGCACCAGCAGCACCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAACTTCAGCAGCAGCAGCAGCAAGCGGCGGCCGTGGCAGCAGCGGC
ACAGCTCCAGCTGCAGCAGCAACAGGTGCAAGAACAGGCGACGGCTCGGG
AACGGGAGCGGGTGCAGCAGCTCGCCGCCCAGCAGCAGCAAGCGCACCTG
CAGGCGCAGCAGCAGGCGCAGCAGCAGCAGGCGGCGGCACGGGCGGTGGC
GGCAGCACAGCTCCAGCTCCAGCAGCAGCTGGAACAGCAGCAGCTGGAAC
AGCAGCAGCAACAGCTGGCGCAGCAGCAGCTTTCCCAGCAGCAGCAGCAG
CAGGCGCAGCAGCGGCAGGCGCCGGTCGGCGTCACCCGCGTGCCGCGGCG
TGTTCCGAAGCTCATGCCTCAGCAGCAGCAACAGCAGCAGCCGCCACCGC
CGCCGCCCGCATCGCCGCCCGCGCATCCTTTGGATGACATCCGGGCGCTC
CTGGCAGCCGGCCGCGTCAACGAGGCGATCGACAAGGTGTGTTTTACACT
TTGTGGGGCTGTACTCTTTCTGATTGGTCGCGATCTAAGGTTCCTCATTG
GCTGATTGGAAAAGCTGTAATATCGGCTCTCGTTAAGGGTTTTCATCTGT
GGTTTGCCCGCGCTGACCCGAACGCCGCTCACCGCTGATAGCTCGACGCG
CCCGCTCGGCCCCGTCCCTTCTCTTTCCTTTCCCCTTTCTGTCTGTCTCG
TCGCGGGTCCGACCGCGCCCTTTTCGCGCCGTAACCACACCGAACCGCGC
CGGTTATGAGCCGGCCGAACAAACAGGCGCTGGCGGCCTCGGAGGTGCGG
ATGGTGGTGTGGACGTGCCGGCAGCTCGACCACTCAGCCGTGCCGCGGCA
CCTCTCGCAGGGCGCGCTGCTCTGCCTGCTCTCGCAGCTGTCGACGGACC
TGCCGCTCGACGCCGCCACCAAGCTGCTCTGGCTGCAGGGCTGCGCGCTC
GCCCTGCGCACCGGTGACTCCACCATCGCACAGTTCGTGCCCGCCGTCCT
CCGCCAGGTACACTTGCATTGCGGGTTGCGTTACGCGCCGCAGAGTTGAT
GCGGCGTGATGCAGCGTTCTGGCGGCGCTTCGGGGCGCATTGGAGCGAAG
TAGAAGTGAAAGGAGGAGGGTTGGGTGTTCCATAGTTACCAGATTGGATT
ACGTTTTACCGCCTTGGCCTGCAACGGCTTCGAGTAGACGAAAAGAGTTC
CATTCGTTCATTTTCGACGGGTGCCGCAGCTCTTGGCTCGTTTTACCATT
CTGACCAGTTGCTTCCCATTCTTAACGTTCCTCGTCTCATCCATGTGCAG
GTGCGCACGGCGCTCGAGGAAGCGGCGCCGGAGATCCGCGCCGAGGGGCC
GCACGCCGCCAGCACGCTCAGCCTGCTCAGCCACGTTATCACCAGCCTCC
AGAGCAACGTTGAGAGTGGCCGGTAACTGCCTGTCAAGCGTCACTTGACG
AACGGCAGTATTGGCAGCAATTAGTTGGCGGGTTGGCTCCGAAGAAAATG
GTGCTCTCTAATTTATGCTGGTTCCGGTGGCGGCGGCGGCGATGGCGGCG
GCAGCGGCGGTGGCGGTGGCGGTGGCGGCGGCTGCAATGGCGGGACGAGC
GCGGCAGTGGCTGCAGTGCCCGTTACCGTTGCGGCGGCGGCCCCAGGCTT
TGGTGGCGGCGGGCATCATCGCCGCCACCAAAGCGGTAACGTGGCGGGTC
CCGACCGCGGTGTAGCCGCCTTCAGCTGTATTGGCGACCGCCGTCGACCG
TCGCCGGCGCTAGCGGCGGACGTGTCGTTGGTGGCCCGCCGGCGCCACCA
ATGCCTGGCGCGCGGCCGCCATGTGGCCGCCAACGTCTCTCCCAGCGCTC
CTCTTTTCTGCCTGATGGAAGTCGCCGCGGCTCAATACGCTACCCGCAGC
TGGTGCTGCAACGACCAGTGCGCCACCGTGCGGTCAGTGCCGGCCGCCGA
AGACGATCGGTGGCGATGGCCGCCCAGGCGCTGGTGGCCACGGCAGTGGC
CTTGGCGATTTCAGAGAGGAAAAGATCAGAGAAGACCGAAAAAATGCCTG
CAATCTGCGCGTCGTGGAGTGCGACAGCTGTCTGTTTTCCAACACAGGAA
TAAAGGAAGGGAACGACGGACATACTTGTAGCTATCTTGCGCTAGGCGGC
TGCAAGAAGCGGCCTCAGCGGCGTTTGGGTCGGTCAATGCGACCATGAGA
AAAGGGCAGCGAAGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7744:2..2567-

>mRNA_P-wetherbeei_contig7744.1.1 ID=mRNA_P-wetherbeei_contig7744.1.1|Name=mRNA_P-wetherbeei_contig7744.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=480bp|location=Sequence derived from alignment at P-wetherbeei_contig7744:2..2567- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTCAGCAGCAGCAACAGCAGCAGCCGCCACCGCCGCCGCCCGCATC
GCCGCCCGCGCATCCTTTGGATGACATCCGGGCGCTCCTGGCAGCCGGCC
GCGTCAACGAGGCGATCGACAAGGCGCTGGCGGCCTCGGAGGTGCGGATG
GTGGTGTGGACGTGCCGGCAGCTCGACCACTCAGCCGTGCCGCGGCACCT
CTCGCAGGGCGCGCTGCTCTGCCTGCTCTCGCAGCTGTCGACGGACCTGC
CGCTCGACGCCGCCACCAAGCTGCTCTGGCTGCAGGGCTGCGCGCTCGCC
CTGCGCACCGGTGACTCCACCATCGCACAGTTCGTGCCCGCCGTCCTCCG
CCAGGTGCGCACGGCGCTCGAGGAAGCGGCGCCGGAGATCCGCGCCGAGG
GGCCGCACGCCGCCAGCACGCTCAGCCTGCTCAGCCACGTTATCACCAGC
CTCCAGAGCAACGTTGAGAGTGGCCGGTAA
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