mRNA_P-wetherbeei_contig7740.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7740.1.1
Unique NamemRNA_P-wetherbeei_contig7740.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7740.1.1 vs. uniprot
Match: A0A6P1J651_9BURK (Porin n=1 Tax=Hydrogenophaga sp. BPS33 TaxID=2651974 RepID=A0A6P1J651_9BURK)

HSP 1 Score: 418 bits (1075), Expect = 5.800e-144
Identity = 222/333 (66.67%), Postives = 247/333 (74.17%), Query Frame = 1
Query:    1 MKKSLIALAVLGSVAGVAQAQSSVTLYGLVDVWAGRTKLEVPGVGSASVTGLNSGGLASSRWGVQGSEDLGGGLKAIFKLEQGFDASNGTANVGAGGASSAFNRQSWVGLEGGFGTVQIGNVWSAFDDIFYIGNAIFDSGAFSPAYQVLSVAAYQDKPRNAVRYTSPNFGGFSATVSHGLDEVAAVSRDQTDFNLLYAAGPLTAAFAYQLQSDAAGVGSDAKFTYFTAAYDLGVAVLKGGVGTTRNVFATKTNDWQIGADFPLSSALTLSAGYAASKDKDGTDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTLVKGTVFGAGIQHKF 999
            MKKSLIALA+LGSVAGVAQAQSSVTLYGL DVW GR K++ PGVGS SVTG+NSGGLA+SR+G+QG+EDLGGGLKAIFKLEQGF+A  GTA VG     +AF RQSWVGLEGGFGTVQ GN+WSAFDD++ IGN++FDS AFSP+Y  LSVAAY DKPRN +RYTSP+FGG S  VSH LDEVA VS DQTDFN+ YA GPLT AFAYQL +DA  VG+DAK  Y T +YD GVAVLKGGVG TRN F TKT DWQIGADFPLSSALTLS GYA SKD+                                     TT  + T FG G+QHKF
Sbjct:    1 MKKSLIALAILGSVAGVAQAQSSVTLYGLADVWVGRQKIDFPGVGSTSVTGVNSGGLATSRFGLQGTEDLGGGLKAIFKLEQGFNADTGTAQVGG----TAFERQSWVGLEGGFGTVQFGNIWSAFDDVYAIGNSVFDSLAFSPSYGTLSVAAYVDKPRNGMRYTSPSFGGVSFAVSHSLDEVAGVSNDQTDFNVQYAGGPLTVAFAYQLLNDAVAVGTDAKAMYLTGSYDFGVAVLKGGVGQTRNFFDTKTKDWQIGADFPLSSALTLSTGYARSKDEPTDFKRTAFSVGALYTLSKRTATYAGFKRQKGEDAAGTTTARVTTFGVGLQHKF 329          
BLAST of mRNA_P-wetherbeei_contig7740.1.1 vs. uniprot
Match: A0A2W4VTX0_9BURK (Porin n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A2W4VTX0_9BURK)

HSP 1 Score: 338 bits (866), Expect = 4.900e-112
Identity = 193/344 (56.10%), Postives = 232/344 (67.44%), Query Frame = 1
Query:    1 MKKSLIALAVLGSVAGVAQAQSSVTLYGLVDVWAGRTKLEVPGVGSASVTGLNSGGLASSRWGVQGSEDLGGGLKAIFKLEQGFDASNGTA-NVGAGGASSAFNRQSWVGLEGGFGTVQIGNVWSAFDDIFYIGNAIFDSGAFSPAYQ--------VLSVAAYQDKPRNAVRYTSPNFGGFSATVSHGLDEVAAVSRDQTDFNLLYAAGPLTAAFAYQLQSDAAGV--GSDAKFTYFTAAYDLGVAVLKGGVGTTRNVFATKTNDWQIGADFPLSSALTLSAGYAASKDKDGTDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTLVKGTVFGAGIQHKF 999
            MKKSLIALAVLGSVAGVAQAQS+VTLYGLVD +  RTK   P     S T +NSGG A SR+G+QGSEDLGGGLKAIFKLEQGF+ S+GT  N G    S++FNRQ+WVGLEGGFGTVQ G VWSAFDD+FY+GN +FDS  FSP           V+S   Y    RN +RYT+PN GGF A VS+G+DE  A   +QTD +L+Y+AGPLTAA AY++   AA    G+D K+TY +AA+DLGVAV+KGG+GT+RNV+ TKTND+Q+G D PLSSAL+L+AG+A SKDK G DT                                    K +  G G+QHKF
Sbjct:    1 MKKSLIALAVLGSVAGVAQAQSTVTLYGLVDAYVARTK-SGPAGAEVSTTVVNSGGTAQSRFGLQGSEDLGGGLKAIFKLEQGFNVSDGTTLNNGGPAGSTSFNRQAWVGLEGGFGTVQFGTVWSAFDDVFYVGNPLFDSFVFSPGVAGYSLGGEAVMSQYNYNFIQRNGMRYTTPNMGGFVAAVSYGVDEKIASVPEQTDISLIYSAGPLTAAVAYEVVKGAAVAFGGADQKYTYGSAAFDLGVAVIKGGLGTSRNVYDTKTNDYQVGVDVPLSSALSLTAGFAGSKDKGGRDTKRTGYAVGASYTLSKRTLAYAAFNKSKSEETGLADKKYSFIGVGVQHKF 343          
BLAST of mRNA_P-wetherbeei_contig7740.1.1 vs. uniprot
Match: A0A6P1IHL3_9BURK (Porin n=1 Tax=Hydrogenophaga sp. PBL-H3 TaxID=434010 RepID=A0A6P1IHL3_9BURK)

HSP 1 Score: 271 bits (694), Expect = 2.630e-86
Identity = 160/279 (57.35%), Postives = 193/279 (69.18%), Query Frame = 1
Query:    1 MKKSLIALAVLGSVAGVAQAQSSVTLYGLVDVWAGRTKLEVPGVGSASVTGLNSGGLASSRWGVQGSEDLGGGLKAIFKLEQGFDASNGTANVGAGGASSAFNRQSWVGLEGGFGTVQIGNVWSAFDDIFYIGNAIFDSGAFSPAYQVLSV-AAYQDKPRNAVRYTSPNFGGFSATVSHGLDEVAAVSRDQTDFNLLYAAGPLTAAFAYQLQSDAAGVGSDAKFTYFTAAYDLGVAVLKGGVGTTRNVFATKTNDWQIGADFPLSSALTLSAGYAASKD 834
            MKKSLIALA+LGSVAGVAQAQS+VTLYG+ DVW G  K    G+ + SV  +NSGG   SR+G+ GSEDLGGGLKA+FKLEQGF    GT +     A +AF RQ++VGL GGFGTV  GNVWS+ DD+    N  FDS AFSPA  V  V  +Y D+P+NA++Y SP+FGGFS   ++GLDE  AVS+D  DF+L Y AGP+   FAYQ+Q+   GV +D K T+   +YDLGVA L    G  +   A KT D+Q G D PLSSALTLS  YA SKD
Sbjct:    1 MKKSLIALAILGSVAGVAQAQSTVTLYGIADVWLGSEK---DGLNAKSVAKVNSGGFNGSRFGLTGSEDLGGGLKAVFKLEQGFAIDTGTQSA----AGTAFGRQAYVGLAGGFGTVTFGNVWSSMDDVLGASNGAFDS-AFSPAGLVNGVNTSYVDRPKNAIKYQSPSFGGFSGGFTYGLDENTAVSQDVVDFSLSYGAGPVGVNFAYQVQN---GV-TDTKLTHLGGSYDLGVAKLLASYGQVKED-AAKTTDYQFGVDVPLSSALTLSGSYARSKD 266          
BLAST of mRNA_P-wetherbeei_contig7740.1.1 vs. uniprot
Match: UPI000A06A9E3 (porin n=1 Tax=Hydrogenophaga palleronii TaxID=65655 RepID=UPI000A06A9E3)

HSP 1 Score: 266 bits (679), Expect = 5.630e-84
Identity = 159/279 (56.99%), Postives = 189/279 (67.74%), Query Frame = 1
Query:    1 MKKSLIALAVLGSVAGVAQAQSSVTLYGLVDVWAGRTKLEVPGVGSASVTGLNSGGLASSRWGVQGSEDLGGGLKAIFKLEQGFDASNGTANVGAGGASSAFNRQSWVGLEGGFGTVQIGNVWSAFDDIFYIGNAIFDSGAFSPAYQVLSVAA-YQDKPRNAVRYTSPNFGGFSATVSHGLDEVAAVSRDQTDFNLLYAAGPLTAAFAYQLQSDAAGVGSDAKFTYFTAAYDLGVAVLKGGVGTTRNVFATKTNDWQIGADFPLSSALTLSAGYAASKD 834
            MKKSLIALAVLGSVAGVAQAQSSVTLYGL+D     +   + GV   SVT L+SG L +SRWG+ GSEDLGGGLKAIF+LEQGFDASNGTA     GA +AF RQS+VGL GGFGTV +GNVW+A DD+    N+ FDS  FS +  V +V A Y   P N ++Y SP+FGGFS   ++ LDEVAAV  D  DF+  Y  GPL   FAYQ+Q+D A   +D K T+   AYD G   L   VG  + +   K  D Q+G D PLSSA+TLS G + SKD
Sbjct:    1 MKKSLIALAVLGSVAGVAQAQSSVTLYGLIDASVSSSSQTIGGVKQKSVTRLDSGNLNTSRWGLTGSEDLGGGLKAIFRLEQGFDASNGTA-----GAGTAFARQSYVGLSGGFGTVTVGNVWTAMDDVLGATNSGFDS-RFSSSNNVSAVKALYASNPGNTLKYVSPSFGGFSFAGTYSLDEVAAVKTDIADFSASYNGGPLLVNFAYQVQNDFAAP-NDLKITHLGGAYDFGAVKLLASVGQVK-LSTGKATDAQVGVDVPLSSAVTLSGGVSRSKD 271          
BLAST of mRNA_P-wetherbeei_contig7740.1.1 vs. uniprot
Match: A0A2H0IWP4_9BURK (Porin n=1 Tax=Comamonadaceae bacterium CG12_big_fil_rev_8_21_14_0_65_59_15 TaxID=1973952 RepID=A0A2H0IWP4_9BURK)

HSP 1 Score: 241 bits (616), Expect = 1.730e-74
Identity = 142/281 (50.53%), Postives = 177/281 (62.99%), Query Frame = 1
Query:    1 MKKSLIALAVLGSVAGVAQAQSSVTLYGLVDVWAGRTKLEVPGVGSASVTGLNSGGLASSRWGVQGSEDLGGGLKAIFKLEQGFDASNGTANVGAGGASSAFNRQSWVGLEGGFGTVQIGNVWSAFDDIFYIGNAIFDSGAFSPAYQVLSVAAYQDKPRNAVRYTSPNFGGFSATVSHGLDEVAAVSRDQTDFNLLYAAGPLTAAFAYQLQSDAAGVGSDAKFTYFTAAYDLGVAVLK---GGVGTTRNVFATKTNDWQIGADFPLSSALTLSAGYAASKD 834
            MKKSLIALAVL + AG A AQS+ T+YGL D+W G  K +     + S T ++SGG+  SRWG++GSEDLGGGLKA FKLEQGF    GTA  G      AF+R + VG+EGGFG V IG  W+AFDDI      +F+S A +PA  V +   YQ  P N +RYTSP+FGG +  +S+ LDE  A +   T  +L Y  GPL A F YQ + DAA  GS   +T   A+Y+ G+A  K   G  G   NV      +W+IGADFP+S+ALTLSAGYA S D
Sbjct:    1 MKKSLIALAVLAA-AGAASAQSTATVYGLADIWFGNVKTDNGAGTTTSTTKVDSGGVNGSRWGLKGSEDLGGGLKANFKLEQGFKLDTGTATAG-----QAFSRVAQVGVEGGFGAVDIGKTWTAFDDIAGASATVFNS-ALAPANNVFTTTGYQGNPGNTIRYTSPSFGGVTGALSYSLDEGVAGTA-VTSMSLAYEGGPLAAQFGYQSE-DAAAPGSSINYTVLAASYNFGMATAKLTYGKAGNMGNVSGADATEWEIGADFPVSAALTLSAGYAKSSD 272          
BLAST of mRNA_P-wetherbeei_contig7740.1.1 vs. uniprot
Match: A0A8D5LYM0_9BURK (Outer membrane porin protein 32 n=2 Tax=Rhodoferax sp. MIZ03 TaxID=2798804 RepID=A0A8D5LYM0_9BURK)

HSP 1 Score: 235 bits (600), Expect = 5.110e-72
Identity = 141/284 (49.65%), Postives = 179/284 (63.03%), Query Frame = 1
Query:    1 MKKSLIALAVLGSVAGVAQAQSSVTLYGLVDVWAGRTKLEVPGVGSASVTGL-NSGGLASSRWGVQGSEDLGGGLKAIFKLEQGFDASNGTANVGAGGASSAFNRQSWVGLEGGFGTVQIGNVWSAFDDIFYIGNAIFDSGAFSPAYQVLSVAAYQDKPRNAVRYTSPNFGGFSATVSHGLDEVAAVSRDQTDFNLLYAAGPLTAAFAYQLQ--SDAAGVGSDAKFTYFTAAYDLGVAVLK---GGVGTTRNVFATKTNDWQIGADFPLSSALTLSAGYAASKD 834
            MKKSL+ALAVL + +G + AQS+VTLYGL DV+ G  K +  G G ++ T L NSGG+ +SRWGV+GSEDLGGGLKA F LEQGF+   G A  G      AF+RQS+VG  GGFG V++G VW+A+DD+    +AIFD+GA +P   +     YQ  P N V Y +P  GGF A VS+ LDE  A +   T FN+ Y AGP+     YQ +  ++ A +  D KFT   A YD GVA  K   G V    N     T ++QIGADFP+S+ALTLSA YA S +
Sbjct:    1 MKKSLVALAVLAA-SGASFAQSTVTLYGLADVFLGSVKAD-NGAGISTTTSLLNSGGVNTSRWGVKGSEDLGGGLKANFLLEQGFNLDTGAATAG-----QAFSRQSYVGFSGGFGEVKLGKVWTAYDDVSGASDAIFDAGALAPMNLIFKSTGYQANPGNTVYYATPAMGGFGAAVSYSLDEKVAGAAAVTSFNVTYGAGPVAVQLGYQSEDITNTALLPEDQKFTRLGATYDFGVATAKLTYGKVNNLGNATGVDTTEYQIGADFPVSAALTLSASYAKSDE 277          
BLAST of mRNA_P-wetherbeei_contig7740.1.1 vs. uniprot
Match: A0A1J5C7R2_9BURK (Porin_4 domain-containing protein n=2 Tax=unclassified Comamonadaceae TaxID=83494 RepID=A0A1J5C7R2_9BURK)

HSP 1 Score: 233 bits (594), Expect = 4.860e-71
Identity = 134/283 (47.35%), Postives = 171/283 (60.42%), Query Frame = 1
Query:    1 MKKSLIALAVLGSVAGVAQAQSSVTLYGLVDVWAGRTKLEVPGVGSASVTGLNSGGLASSRWGVQGSEDLGGGLKAIFKLEQGFDASNGTANV--GAGGASSAFNRQSWVGLEGGFGTVQIGNVWSAFDDIFYIGNAIFDSGAFSPAYQVLSVAAYQDKPRNAVRYTSPNFGGFSATVSHGLDEVAAVSRDQTDFNLLYAAGPLTAAFAYQLQSDAAGVGSDAKFTYFTAAYDLGVAVLKGGVGTTRNVFA---TKTNDWQIGADFPLSSALTLSAGYAASKD 834
            MKKSL+ LAVL +  G A AQSSV+ YG +DVW G  + +     + S T + SGG+  S WG++GSEDLGGGL+A F LEQGF+  +G A    G G  S AF+RQSWVGL G FG +QIG VWSA+DDI    NAIFDS A +P Y+V     Y D+P N +RYTSP   GF+  VS+ LDE +  +      +L YA GPL A   YQ + +  GV  +A FT   A+YD  +   K       NV +    + ++WQIGAD PLS A+ +S  YA S D
Sbjct:    1 MKKSLVGLAVLAAT-GAALAQSSVSAYGELDVWFGGLRTDNGAGATTSQTAIGSGGIDESYWGLKGSEDLGGGLRANFALEQGFEIDSGAAGAYTGQGTGSQAFDRQSWVGLSGNFGEIQIGKVWSAYDDITGASNAIFDSAALAPVYRVFKSVEYIDRPTNGLRYTSPEIAGFTGAVSYSLDEDSTTNPSVRSVSLSYAGGPLAAQLGYQ-EEETIGVPDNASFTMLGASYDFNILTTKLIYAKADNVGSLPGVEASEWQIGADIPLSPAMVVSVSYAKSDD 281          
BLAST of mRNA_P-wetherbeei_contig7740.1.1 vs. uniprot
Match: A0A1Y2R1D4_9BURK (Porin_4 domain-containing protein n=1 Tax=Hydrogenophaga sp. IBVHS1 TaxID=1985169 RepID=A0A1Y2R1D4_9BURK)

HSP 1 Score: 230 bits (587), Expect = 3.010e-70
Identity = 140/278 (50.36%), Postives = 172/278 (61.87%), Query Frame = 1
Query:    1 MKKSLIALAVLGSVAGVAQAQSSVTLYGLVDVWAGRTKLEVPGVGSASVTGLNSGGLASSRWGVQGSEDLGGGLKAIFKLEQGFDASNGTANVGAGGASSAFNRQSWVGLEGGFGTVQIGNVWSAFDDIFYIGNAIFDSGAFSPAYQVLSVAAYQDKPRNAVRYTSPNFGGFSATVSHGLDEVAAVSRDQTDFNLLYAAGPLTAAFAYQLQSDAAGVGSDAKFTYFTAAYDLGVAVLKGGVGTTRNVFATKTNDWQIGADFPLSSALTLSAGYAASKD 834
            MKKSL+ALAVLG+ AG A AQSSV++YG+ DVW G         G+ S++ L+SGGL +SR G +G+EDLGGGL AIF LE G     GTA    GG    F+RQS+VG EGGFG +  G VWSA+DDI     + FDS AFSP Y      +Y   P N  +Y+SP FGG S  VS+ LDE  AV  + T F+L YA GP+    AYQ ++  A   +++KFT   A+YDLGVA L G  G  +     KT D+  G D PL SALTL AGYA  KD
Sbjct:    1 MKKSLVALAVLGAFAGAASAQSSVSIYGIADVWVGSVDN-----GAGSISKLDSGGLQASRLGFKGTEDLGGGLSAIFGLEAGLAMDTGTA----GGLK--FDRQSFVGFEGGFGQIIAGKVWSAYDDISAASFSGFDS-AFSPEYFAFGSTSYSANPNNGFKYSSPTFGGISGAVSYALDENNAVDENTTAFHLKYAGGPIYVGAAYQEETAGA---TESKFTRVGASYDLGVAKLLGSFGQLKQTGGLKTTDYAFGVDVPLGSALTLGAGYARGKD 263          
BLAST of mRNA_P-wetherbeei_contig7740.1.1 vs. uniprot
Match: UPI001BE6A329 (porin n=1 Tax=Rhodoferax sp. U11-2br TaxID=2838878 RepID=UPI001BE6A329)

HSP 1 Score: 229 bits (585), Expect = 1.190e-69
Identity = 143/289 (49.48%), Postives = 180/289 (62.28%), Query Frame = 1
Query:    1 MKKSLIALAVLGSVAGVAQAQSSVTLYGLVDVWAGRTKLEVPGVGSASVTGLNSGGLASSRWGVQGSEDLGGGLKAIFKLEQGFDASNG---TANVGAGGASSAFNRQSWVGLEGGFGTVQIGNVWSAFDDIFYIGNAIFDSGAFSPAYQVLSVAAYQDKPRNAVRYTSPNFGGFSATVSHGL--DEVAAVSRDQT-DFNLLYAAGPLTAAFAYQLQS--DAAGVGSDAKFTYFTAAYDLGVAVLK---GGVGTTRNVFATKTNDWQIGADFPLSSALTLSAGYAASKD 834
            MKKSLIALAVL + +G A AQSSVT+YG+ DVW G  K    G  S + T L+SGG+  SRWG++GSEDLGGGLKA F+LEQGFD  +G   T ++     ++AF+RQSWVGL G FG V++G   + FDDI    NA+FDS A S    V     Y  +P N + Y +P FGGFS  +S+ L  D+ A+ S   T   NL YAAGPL   F YQ+Q   +A    +D K+T   A+Y+ GVA LK   G V    NV    T+++QIG DFP+SSALTLS   A S D
Sbjct:    1 MKKSLIALAVLAA-SGAAMAQSSVTIYGIADVWFGTVKTN-NGTSSLTQTKLDSGGVNGSRWGLKGSEDLGGGLKANFQLEQGFDMDSGKGGTTSIAGVDTAAAFSRQSWVGLSGDFGAVKLGRTPTPFDDINGASNAVFDS-ALSATKDVFLSTGYTVRPNNTLFYQAPTFGGFSGAISYSLGEDKTASTSATSTTSMNLTYAAGPLAVQFGYQVQDIVNATATSADLKYTRLGASYNFGVATLKASYGAVDNVGNVNGADTSEYQIGVDFPVSSALTLSGSIAKSDD 286          
BLAST of mRNA_P-wetherbeei_contig7740.1.1 vs. uniprot
Match: UPI0015D0EC11 (porin n=1 Tax=Rhodoferax sp. BLA1 TaxID=2576062 RepID=UPI0015D0EC11)

HSP 1 Score: 227 bits (579), Expect = 8.660e-69
Identity = 139/286 (48.60%), Postives = 179/286 (62.59%), Query Frame = 1
Query:    1 MKKSLIALAVLGSVAGVAQAQSSVTLYGLVDVWAGRTKLEVPGVGSASVTGLNSGGLASSRWGVQGSEDLGGGLKAIFKLEQGFDASNGTANVGAGGASSAFNRQSWVGLEGGFGTVQIGNVWSAFDDIFYIGNAIFDSGAFSPAYQVLSVAAYQDKPRNAVRYTSPNFGGFSATVSHGL--DEVAAVSRDQT-DFNLLYAAGPLTAAFAYQLQ--SDAAGVGSDAKFTYFTAAYDLGVAVLK---GGVGTTRNVFATKTNDWQIGADFPLSSALTLSAGYAASKD 834
            MKKSLIALAVL + +G A AQSSVT+YG+ DVW G  K    G  S + T L SGG+  SRWG++GSEDLGGGLKA F+LEQGF+  +G         ++AF+RQSWVGL GGFG V++G + +A DD+    NA+FDS   S    V     Y  +P N++ Y +PNF GFS  +S+ L  D+ AA S   T   NL YAAGPL   F YQ++  ++   + +D KFT   A+Y+ GVA LK   G V    NV    T+++QIG DFP+S+ALTLS   A S D
Sbjct:    1 MKKSLIALAVLAA-SGAAMAQSSVTMYGIADVWFGTVKTN-NGTSSLTQTKLESGGVNGSRWGIKGSEDLGGGLKANFQLEQGFNIDDGKGGETNAKTAAAFSRQSWVGLSGGFGAVKLGRMPTALDDVNGASNAVFDS-KLSATNDVFLSGGYTVRPDNSLFYQAPNFSGFSGAISYSLGEDKTAATSATSTTSMNLTYAAGPLAVQFGYQVEDITNTVALNADKKFTRLGASYNFGVATLKASYGAVDNLGNVSGADTSEYQIGVDFPVSAALTLSGNIAKSDD 283          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7740.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P1J651_9BURK5.800e-14466.67Porin n=1 Tax=Hydrogenophaga sp. BPS33 TaxID=26519... [more]
A0A2W4VTX0_9BURK4.900e-11256.10Porin n=1 Tax=Burkholderiales bacterium TaxID=1891... [more]
A0A6P1IHL3_9BURK2.630e-8657.35Porin n=1 Tax=Hydrogenophaga sp. PBL-H3 TaxID=4340... [more]
UPI000A06A9E35.630e-8456.99porin n=1 Tax=Hydrogenophaga palleronii TaxID=6565... [more]
A0A2H0IWP4_9BURK1.730e-7450.53Porin n=1 Tax=Comamonadaceae bacterium CG12_big_fi... [more]
A0A8D5LYM0_9BURK5.110e-7249.65Outer membrane porin protein 32 n=2 Tax=Rhodoferax... [more]
A0A1J5C7R2_9BURK4.860e-7147.35Porin_4 domain-containing protein n=2 Tax=unclassi... [more]
A0A1Y2R1D4_9BURK3.010e-7050.36Porin_4 domain-containing protein n=1 Tax=Hydrogen... [more]
UPI001BE6A3291.190e-6949.48porin n=1 Tax=Rhodoferax sp. U11-2br TaxID=2838878... [more]
UPI0015D0EC118.660e-6948.60porin n=1 Tax=Rhodoferax sp. BLA1 TaxID=2576062 Re... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7740contigP-wetherbeei_contig7740:314..1315 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog338969.Rfer_0527
PFAMsPorin_4
Model size1002
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue7.28e-67
EggNOG OGsCOG3203@1|root,COG3203@2|Bacteria,1R8YD@1224|Proteobacteria,2VNCH@28216|Betaproteobacteria,4ABYP@80864|Comamonadaceae
DescriptionPFAM porin Gram-negative type
Cds size1002
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186998.5226862-CDS-P-wetherbeei_contig7740:313..13151683186998.5226862-CDS-P-wetherbeei_contig7740:313..1315Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7740 314..1315 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7740.1.1prot_P-wetherbeei_contig7740.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7740 314..1315 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7740.1.1

>prot_P-wetherbeei_contig7740.1.1 ID=prot_P-wetherbeei_contig7740.1.1|Name=mRNA_P-wetherbeei_contig7740.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=334bp
MKKSLIALAVLGSVAGVAQAQSSVTLYGLVDVWAGRTKLEVPGVGSASVT
GLNSGGLASSRWGVQGSEDLGGGLKAIFKLEQGFDASNGTANVGAGGASS
AFNRQSWVGLEGGFGTVQIGNVWSAFDDIFYIGNAIFDSGAFSPAYQVLS
VAAYQDKPRNAVRYTSPNFGGFSATVSHGLDEVAAVSRDQTDFNLLYAAG
PLTAAFAYQLQSDAAGVGSDAKFTYFTAAYDLGVAVLKGGVGTTRNVFAT
KTNDWQIGADFPLSSALTLSAGYAASKDKDGTDTKRNGYSIGALYALSKR
TSTYAAFTKAKEEVGGTTLVKGTVFGAGIQHKF*
back to top

mRNA from alignment at P-wetherbeei_contig7740:314..1315+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7740.1.1 ID=mRNA_P-wetherbeei_contig7740.1.1|Name=mRNA_P-wetherbeei_contig7740.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1002bp|location=Sequence derived from alignment at P-wetherbeei_contig7740:314..1315+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAAAATCACTGATCGCTTTGGCGGTTCTCGGCTCCGTGGCGGGTGT GGCCCAAGCCCAGTCCAGCGTGACCCTGTACGGTCTCGTGGACGTGTGGG CTGGCCGTACCAAGCTTGAAGTGCCTGGCGTCGGTTCTGCGTCTGTCACC GGTCTGAATTCCGGTGGTCTGGCTTCCAGCCGTTGGGGTGTGCAAGGTTC AGAAGACCTGGGCGGTGGCCTGAAGGCCATCTTCAAGCTGGAGCAAGGCT TTGACGCATCCAACGGTACCGCTAACGTCGGCGCCGGCGGCGCCAGCAGC GCATTCAACCGCCAATCCTGGGTCGGCCTGGAAGGCGGCTTCGGTACCGT TCAAATTGGTAACGTGTGGTCGGCCTTCGACGACATTTTCTACATCGGCA ACGCCATCTTCGATTCGGGCGCGTTCTCTCCTGCATACCAAGTCCTGAGC GTCGCTGCTTACCAGGACAAGCCGCGCAACGCCGTTCGTTACACCTCGCC CAACTTCGGTGGCTTCAGCGCTACCGTGTCGCACGGCCTGGATGAAGTCG CTGCTGTCAGCCGCGACCAGACCGACTTCAACCTGCTGTACGCCGCTGGT CCTCTGACGGCTGCATTTGCCTACCAGCTGCAATCTGACGCTGCCGGTGT CGGTTCGGACGCCAAGTTCACCTACTTCACCGCGGCCTATGACCTCGGCG TTGCAGTCCTGAAGGGCGGCGTGGGTACCACCCGCAACGTGTTCGCTACC AAGACCAACGACTGGCAAATCGGCGCGGACTTCCCGCTGTCGTCCGCTCT GACCCTGTCGGCCGGCTACGCCGCGTCCAAGGACAAGGATGGCACGGACA CCAAGCGCAATGGCTACTCCATTGGCGCCCTGTACGCACTGTCCAAGCGC ACCTCGACCTATGCTGCCTTCACCAAGGCCAAGGAAGAAGTCGGTGGTAC CACCCTGGTCAAGGGCACCGTTTTTGGCGCTGGCATCCAGCACAAGTTCT GA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig7740:314..1315+

>mRNA_P-wetherbeei_contig7740.1.1 ID=mRNA_P-wetherbeei_contig7740.1.1|Name=mRNA_P-wetherbeei_contig7740.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1002bp|location=Sequence derived from alignment at P-wetherbeei_contig7740:314..1315+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAAAATCACTGATCGCTTTGGCGGTTCTCGGCTCCGTGGCGGGTGT
GGCCCAAGCCCAGTCCAGCGTGACCCTGTACGGTCTCGTGGACGTGTGGG
CTGGCCGTACCAAGCTTGAAGTGCCTGGCGTCGGTTCTGCGTCTGTCACC
GGTCTGAATTCCGGTGGTCTGGCTTCCAGCCGTTGGGGTGTGCAAGGTTC
AGAAGACCTGGGCGGTGGCCTGAAGGCCATCTTCAAGCTGGAGCAAGGCT
TTGACGCATCCAACGGTACCGCTAACGTCGGCGCCGGCGGCGCCAGCAGC
GCATTCAACCGCCAATCCTGGGTCGGCCTGGAAGGCGGCTTCGGTACCGT
TCAAATTGGTAACGTGTGGTCGGCCTTCGACGACATTTTCTACATCGGCA
ACGCCATCTTCGATTCGGGCGCGTTCTCTCCTGCATACCAAGTCCTGAGC
GTCGCTGCTTACCAGGACAAGCCGCGCAACGCCGTTCGTTACACCTCGCC
CAACTTCGGTGGCTTCAGCGCTACCGTGTCGCACGGCCTGGATGAAGTCG
CTGCTGTCAGCCGCGACCAGACCGACTTCAACCTGCTGTACGCCGCTGGT
CCTCTGACGGCTGCATTTGCCTACCAGCTGCAATCTGACGCTGCCGGTGT
CGGTTCGGACGCCAAGTTCACCTACTTCACCGCGGCCTATGACCTCGGCG
TTGCAGTCCTGAAGGGCGGCGTGGGTACCACCCGCAACGTGTTCGCTACC
AAGACCAACGACTGGCAAATCGGCGCGGACTTCCCGCTGTCGTCCGCTCT
GACCCTGTCGGCCGGCTACGCCGCGTCCAAGGACAAGGATGGCACGGACA
CCAAGCGCAATGGCTACTCCATTGGCGCCCTGTACGCACTGTCCAAGCGC
ACCTCGACCTATGCTGCCTTCACCAAGGCCAAGGAAGAAGTCGGTGGTAC
CACCCTGGTCAAGGGCACCGTTTTTGGCGCTGGCATCCAGCACAAGTTCT
GA
back to top