mRNA_P-wetherbeei_contig7738.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7738.4.1
Unique NamemRNA_P-wetherbeei_contig7738.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7738.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7738contigP-wetherbeei_contig7738:2357..2971 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size197
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Cds size102
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186998.2389143-CDS-P-wetherbeei_contig7738:2356..24041683186998.2389143-CDS-P-wetherbeei_contig7738:2356..2404Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7738 2357..2404 -
1683186998.2496972-CDS-P-wetherbeei_contig7738:2499..25531683186998.2496972-CDS-P-wetherbeei_contig7738:2499..2553Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7738 2500..2553 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186998.2611387-UTR-P-wetherbeei_contig7738:2553..25601683186998.2611387-UTR-P-wetherbeei_contig7738:2553..2560Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7738 2554..2560 -
1683186998.274187-UTR-P-wetherbeei_contig7738:2883..29711683186998.274187-UTR-P-wetherbeei_contig7738:2883..2971Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7738 2884..2971 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7738.4.1prot_P-wetherbeei_contig7738.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7738 2357..2553 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7738.4.1

>prot_P-wetherbeei_contig7738.4.1 ID=prot_P-wetherbeei_contig7738.4.1|Name=mRNA_P-wetherbeei_contig7738.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=34bp
MAKGRAIRKAMTDDDSETEIKFLRSCMPDDAGG*
back to top

mRNA from alignment at P-wetherbeei_contig7738:2357..2971-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7738.4.1 ID=mRNA_P-wetherbeei_contig7738.4.1|Name=mRNA_P-wetherbeei_contig7738.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=615bp|location=Sequence derived from alignment at P-wetherbeei_contig7738:2357..2971- (Phaeothamnion wetherbeei SAG_119_79)
CCCCCAAAAGCTTTGCATAACCTGGTGGGAGGAAGAAAGAGGAGTGATTT
ATTCCATTACGGAGAGCCCCAGTCGACCGTCAAAGCAAGCGAGTGCTTTC
GTCGCTTTAGGGCATTGCGTCAAAATTTGGGATCGTGAGCATTGATAAGA
GAGCACACGTTTAGCTACTGAGAGGACTGAATCAGTCGTGCACCTGTAAC
AAACATCGTATGTGTTTCACCTCCTTGCTTAACTTGTGAGAAAGGCGTGT
CTCCTTGTCGATAGAAACACTCCACTTCCAGATTACTCCCTTACAACGCG
CAGGTGATCCTGTCGGTTCTGCCATTTAGCTAGCCTCCTGAAGGTTTGGT
TTACTTCGTCGATCGAACCTCTCACAGATAACTGGATTTTTGAACGTCCT
CACTTTCGCAGATTCGCGATGGCAAAAGGCCGGGCGATCCGGAAGGCGAT
GACGGATGACGACTCCGAGACGGTAATCAATATTACGAGGAATCACTCGC
TGTGTAGCGACATCACCTCGTTACTTTATGGACTTCCCTATTGCTTCTCT
CCTCTCTTCCTTCGCAGGAAATCAAATTTCTTCGAAGCTGCATGCCTGAC
GACGCCGGAGGGTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig7738:2357..2971-

>mRNA_P-wetherbeei_contig7738.4.1 ID=mRNA_P-wetherbeei_contig7738.4.1|Name=mRNA_P-wetherbeei_contig7738.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=102bp|location=Sequence derived from alignment at P-wetherbeei_contig7738:2357..2971- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAAAAGGCCGGGCGATCCGGAAGGCGATGACGGATGACGACTCCGA
GACGGAAATCAAATTTCTTCGAAGCTGCATGCCTGACGACGCCGGAGGGT
GA
back to top