mRNA_P-wetherbeei_contig7737.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7737.1.1
Unique NamemRNA_P-wetherbeei_contig7737.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7737.1.1 vs. uniprot
Match: D7FRB7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRB7_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 1.500e-10
Identity = 35/73 (47.95%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:    1 QVWKNKRLWEGFIMCSKKLAMESGATSFIALAQLPVEPLTEVVRK--LPALGEGLARYAANLVAVPAPLKQVL 213
            QVW +  LW+GF+ C+K +A ESGATSFIA+ QLP + L E +    +  L E L RYA  LV V   ++ VL
Sbjct: 1169 QVWTSDGLWKGFLRCAKMMAKESGATSFIAMVQLPEKKLKEALANPLMKGLKEPLRRYAQTLVKVDPGVRAVL 1241
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BLAST of mRNA_P-wetherbeei_contig7737.1.1 vs. uniprot
Match: A0A7M7J4G6_VARDE (Uncharacterized protein n=1 Tax=Varroa destructor TaxID=109461 RepID=A0A7M7J4G6_VARDE)

HSP 1 Score: 50.8 bits (120), Expect = 1.580e-5
Identity = 24/60 (40.00%), Postives = 36/60 (60.00%), Query Frame = 1 
Query:    1 QVWKNKRLWEGFIMCSKKLAMESGATSFIALAQLPVEPLTEVVRKLPALGEGLARYAANL 180
            QVWK K++WEGFI C ++   +S       + QLP EPL E+  + P+L E L ++  +L
Sbjct: 1014 QVWKQKKVWEGFIKCCERAQPQS----LHVIIQLPAEPLQELFNEAPSLKEPLIQHVTSL 1069
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BLAST of mRNA_P-wetherbeei_contig7737.1.1 vs. uniprot
Match: A0A1V9XFD4_9ACAR (Symplekin-like n=1 Tax=Tropilaelaps mercedesae TaxID=418985 RepID=A0A1V9XFD4_9ACAR)

HSP 1 Score: 50.8 bits (120), Expect = 1.580e-5
Identity = 24/60 (40.00%), Postives = 36/60 (60.00%), Query Frame = 1 
Query:    1 QVWKNKRLWEGFIMCSKKLAMESGATSFIALAQLPVEPLTEVVRKLPALGEGLARYAANL 180
            QVWK K++WEGFI C ++   +S       + QLP EPL E+  + P+L E L ++  +L
Sbjct: 1019 QVWKQKKVWEGFIKCCERAQPQS----LHVIIQLPAEPLQELFNEAPSLKEPLIQHVTSL 1074
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BLAST of mRNA_P-wetherbeei_contig7737.1.1 vs. uniprot
Match: A0A7R9GBE3_9CRUS (Hypothetical protein n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9GBE3_9CRUS)

HSP 1 Score: 50.1 bits (118), Expect = 2.960e-5
Identity = 28/75 (37.33%), Postives = 41/75 (54.67%), Query Frame = 1 
Query:    1 QVWKNKRLWEGFIMCSKKLAMESGATSFIALAQLPVEPLTEVVRKLPALGEGLAR----YAANLVAVPAPLKQVL 213
            +VWKN R+WEGFI C ++     GA S + L QL  E L  V ++ P L + ++R    +  N   VP P+ + L
Sbjct: 1082 EVWKNPRVWEGFIKCCQRC----GAPSCVVLMQLQAEQLKSVFKQAPDLKDYMSRHVDSFTENNAFVPEPVLEAL 1152
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7737.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FRB7_ECTSI1.500e-1047.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7M7J4G6_VARDE1.580e-540.00Uncharacterized protein n=1 Tax=Varroa destructor ... [more]
A0A1V9XFD4_9ACAR1.580e-540.00Symplekin-like n=1 Tax=Tropilaelaps mercedesae Tax... [more]
A0A7R9GBE3_9CRUS2.960e-537.33Hypothetical protein n=1 Tax=Notodromas monacha Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7737contigP-wetherbeei_contig7737:35..259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FRB7
PFAMsDUF3453,Symplekin_C
Model size225
Max annot lvl2759|Eukaryota
KEGG koko:K06100
KEGG Pathwayko03015,ko04530,map03015,map04530
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.45e-11
EggNOG OGsKOG1895@1|root,KOG1895@2759|Eukaryota
DescriptionmRNA polyadenylation
Cds size225
COG categoryS
BRITEko00000,ko00001,ko03019,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186998.2086964-CDS-P-wetherbeei_contig7737:34..2591683186998.2086964-CDS-P-wetherbeei_contig7737:34..259Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7737 35..259 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7737.1.1prot_P-wetherbeei_contig7737.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7737 35..259 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7737.1.1

>prot_P-wetherbeei_contig7737.1.1 ID=prot_P-wetherbeei_contig7737.1.1|Name=mRNA_P-wetherbeei_contig7737.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=75bp
QVWKNKRLWEGFIMCSKKLAMESGATSFIALAQLPVEPLTEVVRKLPALG
EGLARYAANLVAVPAPLKQVLKLP*
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mRNA from alignment at P-wetherbeei_contig7737:35..259+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7737.1.1 ID=mRNA_P-wetherbeei_contig7737.1.1|Name=mRNA_P-wetherbeei_contig7737.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=225bp|location=Sequence derived from alignment at P-wetherbeei_contig7737:35..259+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGTGTGGAAAAACAAGCGGCTATGGGAGGGCTTCATTATGTGCTCCAA
AAAGCTGGCGATGGAGTCGGGAGCGACGTCGTTCATCGCACTGGCGCAGC
TGCCGGTTGAGCCGTTGACGGAGGTCGTGCGGAAGCTGCCGGCGCTCGGG
GAAGGTCTGGCGCGTTATGCGGCCAACCTGGTGGCAGTGCCAGCGCCGCT
GAAGCAGGTCCTCAAGCTCCCATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7737:35..259+

>mRNA_P-wetherbeei_contig7737.1.1 ID=mRNA_P-wetherbeei_contig7737.1.1|Name=mRNA_P-wetherbeei_contig7737.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=225bp|location=Sequence derived from alignment at P-wetherbeei_contig7737:35..259+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGTGTGGAAAAACAAGCGGCTATGGGAGGGCTTCATTATGTGCTCCAA
AAAGCTGGCGATGGAGTCGGGAGCGACGTCGTTCATCGCACTGGCGCAGC
TGCCGGTTGAGCCGTTGACGGAGGTCGTGCGGAAGCTGCCGGCGCTCGGG
GAAGGTCTGGCGCGTTATGCGGCCAACCTGGTGGCAGTGCCAGCGCCGCT
GAAGCAGGTCCTCAAGCTCCCATGA
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