mRNA_P-wetherbeei_contig7733.1.6 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7733.1.6
Unique NamemRNA_P-wetherbeei_contig7733.1.6
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7733.1.6 vs. uniprot
Match: D7FKG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKG8_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 5.250e-25
Identity = 109/353 (30.88%), Postives = 152/353 (43.06%), Query Frame = 1 
Query:   61 GESPLTRNCTLVRRVGSTRVEPVGDAAPAIAWLTSRGERHARDGVAPP----AFDDEACQEPTQRLQPRKSDTAVTPMGSSSDDA----RRWTGRVSLSSLPGGGFHRKVRVTIDGAVEFPIDALVECDRAGDADGGFGAEGGARVVEADCTDCRHCEIVLVQQFPEGIYLDINEVKGRHDFE----PAPGTLGAVRAFAMSDGPIDVEVPAASATPLLVGFKFALTANLSSNG----SLELHAGLSIPVHFRYPH--VSRDGAS---YATVHMAVPTAFVRCGAEANGGKESGDGEGSRTFDATSARTGDVSGFQKLRAVPEHGLTLTVPAGQASDRDVVVGVTVGTALLGC 1056
            G   L+      R +G   VE V +A   +      G   +   VAPP      +D++      R +P+  D A   +  S+       +RW G V++  LPGGG HR VRV  D            C   G+A  G    G ++  +A       CE++L Q  P+G Y+D++EVK RHDF+    P  G    V  F    GPIDVE+P++ +   LV F   +  +    G    +  + A L++PVH RYP     R G     YA V +  P A +RCG+  N G+                       F  L A P  G+ L VP G A  RD+V+  T G A LGC
Sbjct:  263 GNQELSYASVSARSLGDAEVEVVSEAHRVLPGGVLSGYDLS---VAPPNNALIGNDKSSDGEPDRGRPKNVDEAAVFVDHSTAPVDVVGQRWRGDVAVVGLPGGGLHRHVRVKFD----------ARC--TGNACEGLSERGESQDSDAS----EWCEVLLAQHVPQGAYIDVDEVKARHDFDVLSSPPVGRRVGVETF--EGGPIDVELPSSVSGQHLVNFNLWVDMSERDRGREGEARSIQADLTLPVHLRYPDPGCERRGEECEGYAWVEVPPPLASIRCGSAGNMGQF----------------------FPVLPARPPVGVALRVPRGIAWHRDLVMMGTTGAAALGC 572
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BLAST of mRNA_P-wetherbeei_contig7733.1.6 vs. uniprot
Match: A0A6H5L0R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0R2_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.440e-11
Identity = 75/253 (29.64%), Postives = 100/253 (39.53%), Query Frame = 1 
Query:  241 RLQPRKSDTAVTPMGSSSDDA----RRWTGRVSLSSLPGGGFHRKVRVTIDGAVEFPIDALVE------------------CDRA---------------GDAD----GGFGAEGGARV---VEADCTD-----------------CRHCEIVLVQQFPEGIYLDINEVKGRHDFE----PAPGTLGAVRAFAMSDGPIDVEVPAASATPLLVGFKFALTANLSSNG----SLELHAGLSIPVHFRYPHVSRD 792
            R +P K D A   +  S+  A    +RW G V++  LPGGG HR VR +   A    + A                     C+RA               GD      GGF   G  RV     A CT                     CE++L Q  P G Y+D++EVK RHDF+    P  G    V  F    GPIDVE+P++ +   LV F   +  +    G    +  + A L++PVH RYP    D
Sbjct:  309 RGRPMKVDEAAVFVDHSTAPADVVGQRWRGDVAVVGLPGGGLHRHVRYSFCRASTIVLSAHHSHDRLSAIMKKDARTGRGCCERAELIGDGKIGTWLPLCGDLQIMSAGGFHKHGSQRVRVKFNARCTGKACDDLSERGESQDGDALELCEVLLAQHVPRGAYIDVDEVKARHDFDVLSSPPIGRRVGVETF--QGGPIDVELPSSVSGQHLVNFNLWVDMSERDRGLEGEASSIQADLTLPVHLRYPDPGCD 559
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BLAST of mRNA_P-wetherbeei_contig7733.1.6 vs. uniprot
Match: UPI0009E52FB3 (uncharacterized protein LOC110065154 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E52FB3)

HSP 1 Score: 58.5 bits (140), Expect = 5.180e-6
Identity = 47/190 (24.74%), Postives = 85/190 (44.74%), Query Frame = 1 
Query:  505 CEIVLVQQFPEGIYLDINEVKGRHDFEPAPGTLGAVRAFAMSDGPIDVEVPAASATPLLVGFKFALTANLSSNGSLELHAGLSIPVHFRYPHVSRDGASYATVHMAVPTAFVRCGAEANGGKESGDGEGSRTFDATSARTGD---VSGFQKLRAVPEHGLTLTVPAGQASDRDVVVGVTVGTALLGCAVI 1065
            C+++LV++FP GIY+D +++K   +F       G           ++     AS+  + V  K A+   L +     + A ++IPVH RY H +  G  +A+V ++ P  F RC    +   E G        +A    + D   ++   K     +  +   VP GQ      ++ +TV + + GC++I
Sbjct:   76 CQLLLVERFPSGIYVDPDQIKNEVEF-------GGPEVLTTETINVESLAHHASSHKIFVFPKIAIDYRLKT-----MSANITIPVHLRY-HQAAIGTKFASVSLSSPKVFGRCNGVTSPALECGTPPIKAPCNAKGMPSCDWVPLNSVNKDTLQSDIPVVFHVPVGQIEHSWPIIALTVLSTMAGCSLI 252
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7733.1.6 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FKG8_ECTSI5.250e-2530.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0R2_9PHAE1.440e-1129.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0009E52FB35.180e-624.74uncharacterized protein LOC110065154 n=1 Tax=Orbic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7733contigP-wetherbeei_contig7733:151..2463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog71139.XP_010055280.1
PFAMsPIG-X
Model size1306
Max annot lvl35493|Streptophyta
KEGG koko:K07541
KEGG ReactionR05919
KEGG Pathwayko00563,ko01100,map00563,map01100
Hectar predicted targeting categoryother localisation
Exons5
Evalue5.33e-06
EggNOG OGs28R55@1|root,2QXU6@2759|Eukaryota,37SHV@33090|Viridiplantae,3GAP7@35493|Streptophyta
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_002130.1
DescriptionPhosphatidylinositol-glycan biosynthesis class X
Cds size855
COG categoryS
BRITEko00000,ko00001
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7733.1.6prot_P-wetherbeei_contig7733.1.6Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7733 593..2291 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186997.9394636-UTR-P-wetherbeei_contig7733:150..3191683186997.9394636-UTR-P-wetherbeei_contig7733:150..319Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7733 151..319 +
1683186997.954827-UTR-P-wetherbeei_contig7733:482..5921683186997.954827-UTR-P-wetherbeei_contig7733:482..592Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7733 483..592 +
1683186998.0058868-UTR-P-wetherbeei_contig7733:2291..24631683186998.0058868-UTR-P-wetherbeei_contig7733:2291..2463Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7733 2292..2463 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186997.9658887-CDS-P-wetherbeei_contig7733:592..6761683186997.9658887-CDS-P-wetherbeei_contig7733:592..676Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7733 593..676 +
1683186997.9757318-CDS-P-wetherbeei_contig7733:852..10561683186997.9757318-CDS-P-wetherbeei_contig7733:852..1056Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7733 853..1056 +
1683186997.9855666-CDS-P-wetherbeei_contig7733:1335..14871683186997.9855666-CDS-P-wetherbeei_contig7733:1335..1487Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7733 1336..1487 +
1683186997.9956677-CDS-P-wetherbeei_contig7733:1876..22911683186997.9956677-CDS-P-wetherbeei_contig7733:1876..2291Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7733 1877..2291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7733.1.6

>prot_P-wetherbeei_contig7733.1.6 ID=prot_P-wetherbeei_contig7733.1.6|Name=mRNA_P-wetherbeei_contig7733.1.6|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=285bp
MGSSSDDARRWTGRVSLSSLPGGGFHRKVRVTIDGAVEFPIDALVECDRA
GDADGGFGAEGGARVVEADCTDCRHCEIVLVQQFPEGIYLDINEVKGRHD
FEPAPGTLGAVRAFAMSDGPIDVEVPAASATPLLVGFKFALTANLSSNGS
LELHAGLSIPVHFRYPHVSRDGASYATVHMAVPTAFVRCGAEANGGKESG
DGEGSRTFDATSARTGDVSGFQKLRAVPEHGLTLTVPAGQASDRDVVVGV
TVGTALLGCAVIGAVIWRRRPAALAERGKLGKKE*
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mRNA from alignment at P-wetherbeei_contig7733:151..2463+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7733.1.6 ID=mRNA_P-wetherbeei_contig7733.1.6|Name=mRNA_P-wetherbeei_contig7733.1.6|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2313bp|location=Sequence derived from alignment at P-wetherbeei_contig7733:151..2463+ (Phaeothamnion wetherbeei SAG_119_79)
AAAAAATCCAACCCCAGGGGAGGAGAATAGCACCCTTTGTACCTTGCCTT
CATTCTATTCGGCGAAAGTCCTTTGACGAGGAACTGTACACTGGTTCGTA
GAGTCGGAAGCACTCGCGTCGAACCCGTCGGCGACGCTGCTCCCGCGATC
GCTTGGTTAACCTCTCGAGGTCGGTTGCTCATCAGCTGTATTGCTGTGTT
CGCTCGCCGTCGTTCTCCAATGCAGTCGGTATGCCCTTGTCGATGACGCC
TGCCGCACGAACTCGTGACTTTTTTGCTAAGACTGGAGTGGTTGATGTTT
GCTGCTGTCTGCTTAATGATGCCTCTGAACAGGTGAGCGCCACGCTCGCG
ACGGCGTGGCGCCTCCCGCGTTCGATGACGAGGCGTGCCAAGAGCCAACA
CAACGCCTCCAACCTAGGAAGAGCGATACTGCTGTGACCCCCATGGGCAG
CTCATCTGATGATGCACGGCGATGGACCGGACGCGTCTCTCTTTCTTCTC
TGCCGGGCGGCGGTTTCCATAGAAAGGTGCAGTGCTGAGGCCTCAAGAAG
AAGGAATTTATGTGAGCGAGTTCAGGACGCGAAGAGCCATTCGGACACAG
GAGATTCTAATAGGAAACTGCGTGCGATGTTCTGTGCCGAGTGAAGGACG
GTAATGGTCCGACGTCGAGGTCGGCTTTCCTCATACTCCTCCCCTGAAGC
AGGTGCGCGTTACCATTGATGGCGCCGTGGAGTTTCCGATCGATGCGCTC
GTCGAGTGCGACCGCGCGGGCGATGCGGACGGCGGCTTCGGGGCAGAGGG
CGGCGCTCGAGTGGTCGAGGCGGACTGCACCGATTGCCGTCACTGCGAGA
TAGTCCTCGTGCAGCAGTTTCCCGAGGGAATCTACCTTGACATCAACGAG
GTCAAGGTGAAAGCTTGCTTACGATAAGCCCGGCCTCTTGTTTTCGCAGG
TTGCATATTTCTCTCATCTCTCAGATTCCAAAAGCTGCTTGTGTGACTTC
GCACGTCTCACTTCCTGCCCTGCCTGTGTCGTTTGTACATCGCGGCTCGT
CTGTGAAAAGGGTACTGAGTGGTGCTGTCTGCCTCCTGCTGTATTGAAGA
ACCCCGTCATGATTGTAACTTCTAAGAACTCGTTGTCGGGACGCCCCTCC
ATGCTGTGTTTTTTCCCCATTATCTCACTATGCAGGGCCGTCACGACTTC
GAACCGGCGCCGGGCACACTCGGCGCGGTGCGCGCCTTTGCAATGTCTGA
CGGGCCCATCGACGTGGAAGTGCCCGCGGCAAGCGCTACTCCACTCCTTG
TGGGCTTCAAGTTTGCATTGACTGCGAATCTGAGCAGGTGGGAGACAGAC
AGTTGCAAGAAACCATGTCAATAGACGGTAGATGGTAGTGGCGCGGCGGC
CGGGGATCGATTACCACTTTACTTGTTCCCTTCTGTTTTTTAATGATGCA
ACCATGTTGTATGCTCGTTCTTCTCTTTTTTCCACGGCTATGGCGTCCAC
GTGCAGATCTTATGAGCATTTGCTCCGCTCGAGATGGGCTGCATATGTTC
TTCATTGACAATGTCCCTAGTTACAGCGAGAAAGTACGAAAGAGGATTGC
TCTTTGGTTTGCTTTCTGAGTATCAATCACCTCGATTGCTATTCTGTAAC
TTTGGGCGCTTGGCGATTATTGTGTCGCGCGCATCATCCGCCGCCGTTCC
CCCCGCCGGTATACCCCCTAATGCAGCAACGGGTCCTTGGAGCTGCATGC
GGGTCTCTCAATCCCTGTTCACTTTCGATATCCCCATGTTAGCCGCGATG
GCGCGTCGTATGCCACGGTGCACATGGCCGTGCCCACTGCATTTGTTCGC
TGCGGCGCCGAAGCCAACGGTGGCAAGGAAAGCGGCGACGGGGAGGGCAG
CAGAACTTTTGATGCCACGTCCGCTCGCACCGGCGATGTGAGTGGATTCC
AGAAGCTGCGGGCGGTGCCAGAGCACGGGTTGACTCTCACGGTGCCAGCG
GGACAGGCAAGTGACAGAGATGTGGTGGTTGGCGTGACGGTGGGGACAGC
TCTGCTTGGCTGTGCAGTAATTGGCGCTGTTATATGGCGGCGGCGACCGG
CTGCTTTGGCAGAACGAGGGAAACTCGGTAAGAAAGAGTGAGTTGACCAA
GTTTTAGACTCTGCTTCCTCCCCTGGAGTTTGATAGGCAGAAAATACTCC
CTCTGTGTGTTTCCGGTCGCACACAATATGAGAGAGCTCGCCTTTGACAG
AAGCGCGGCTTTCTACATCATAAATAAATGTCATCAGTAGCAGCTGCACA
CCCAACCAGCGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7733:151..2463+

>mRNA_P-wetherbeei_contig7733.1.6 ID=mRNA_P-wetherbeei_contig7733.1.6|Name=mRNA_P-wetherbeei_contig7733.1.6|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=855bp|location=Sequence derived from alignment at P-wetherbeei_contig7733:151..2463+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCAGCTCATCTGATGATGCACGGCGATGGACCGGACGCGTCTCTCT
TTCTTCTCTGCCGGGCGGCGGTTTCCATAGAAAGGTGCGCGTTACCATTG
ATGGCGCCGTGGAGTTTCCGATCGATGCGCTCGTCGAGTGCGACCGCGCG
GGCGATGCGGACGGCGGCTTCGGGGCAGAGGGCGGCGCTCGAGTGGTCGA
GGCGGACTGCACCGATTGCCGTCACTGCGAGATAGTCCTCGTGCAGCAGT
TTCCCGAGGGAATCTACCTTGACATCAACGAGGTCAAGGGCCGTCACGAC
TTCGAACCGGCGCCGGGCACACTCGGCGCGGTGCGCGCCTTTGCAATGTC
TGACGGGCCCATCGACGTGGAAGTGCCCGCGGCAAGCGCTACTCCACTCC
TTGTGGGCTTCAAGTTTGCATTGACTGCGAATCTGAGCAGCAACGGGTCC
TTGGAGCTGCATGCGGGTCTCTCAATCCCTGTTCACTTTCGATATCCCCA
TGTTAGCCGCGATGGCGCGTCGTATGCCACGGTGCACATGGCCGTGCCCA
CTGCATTTGTTCGCTGCGGCGCCGAAGCCAACGGTGGCAAGGAAAGCGGC
GACGGGGAGGGCAGCAGAACTTTTGATGCCACGTCCGCTCGCACCGGCGA
TGTGAGTGGATTCCAGAAGCTGCGGGCGGTGCCAGAGCACGGGTTGACTC
TCACGGTGCCAGCGGGACAGGCAAGTGACAGAGATGTGGTGGTTGGCGTG
ACGGTGGGGACAGCTCTGCTTGGCTGTGCAGTAATTGGCGCTGTTATATG
GCGGCGGCGACCGGCTGCTTTGGCAGAACGAGGGAAACTCGGTAAGAAAG
AGTGA
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