mRNA_P-wetherbeei_contig7727.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7727.2.1
Unique NamemRNA_P-wetherbeei_contig7727.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7727.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7727contigP-wetherbeei_contig7727:1523..2423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size711
Hectar predicted targeting categorymitochondrion
Exons2
Cds size708
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186997.2746215-CDS-P-wetherbeei_contig7727:1522..20021683186997.2746215-CDS-P-wetherbeei_contig7727:1522..2002Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7727 1523..2002 +
1683186997.283686-CDS-P-wetherbeei_contig7727:2194..24221683186997.283686-CDS-P-wetherbeei_contig7727:2194..2422Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7727 2195..2422 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7727.2.1prot_P-wetherbeei_contig7727.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7727 1523..2422 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7727.2.1

>prot_P-wetherbeei_contig7727.2.1 ID=prot_P-wetherbeei_contig7727.2.1|Name=mRNA_P-wetherbeei_contig7727.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=236bp
RSAFGLCKVARHARHRAQQLFRPRSTSRGHHFTSCAPFERDFDWNAQCGA
SRGILHWCTAICAAHQCASRRGTARTERSGRQSSFGWVLGCKCPSDRPTR
RTPGPIIGWQGTSCRRGFFDGCATRIYSLRNGVWICPAAAEGHCQDWRGV
LSGRDASCWQKFFRRQRKGTKNQPSMATTGASAAGTCRRRCHHHSRGRAR
AAVPRPCLASPSPAAVPAAAAAAAAGPGRHSSRSSW
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mRNA from alignment at P-wetherbeei_contig7727:1523..2423+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7727.2.1 ID=mRNA_P-wetherbeei_contig7727.2.1|Name=mRNA_P-wetherbeei_contig7727.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=901bp|location=Sequence derived from alignment at P-wetherbeei_contig7727:1523..2423+ (Phaeothamnion wetherbeei SAG_119_79)
CGTTCCGCGTTTGGTCTTTGTAAAGTAGCGAGACATGCGCGTCATCGTGC
CCAGCAGCTATTCCGACCCCGGAGCACGAGCCGCGGGCACCACTTCACCT
CTTGCGCCCCTTTCGAGCGAGACTTCGACTGGAACGCCCAATGCGGAGCA
AGTAGGGGCATCCTCCATTGGTGCACAGCCATCTGCGCAGCGCATCAATG
CGCCAGCCGTCGCGGCACGGCCCGCACCGAGAGAAGCGGACGCCAGTCGT
CATTCGGCTGGGTCCTCGGCTGTAAATGCCCTTCCGACCGGCCCACACGC
CGTACGCCCGGGCCGATCATCGGATGGCAAGGAACCTCTTGCCGTCGCGG
CTTCTTCGACGGCTGCGCAACCCGCATCTATTCCCTTCGTAACGGGGTCT
GGATCTGTCCCGCAGCAGCAGAAGGACACTGCCAGGACTGGCGGGGCGTC
CTCAGCGGACGGGATGCGTCCTGCTGGCAGGTATGCGGCCTCTTGAAAAA
GAAACAGGAGAATTCTATTATATTTACAGGGACACGAGGTAAAGCAGTCG
TTGCGTTGTCTACATAGAGCTTTCGATCCGCTCCTTTTCACTTGTGCGCT
GCGCTCGTCGGCGCATTTCGCTCCTCACGCCTGTGCGCTTGCCTCACCCT
TTTGGTTTTCGTTGACTGCCAGAAGTTCTTCCGGCGCCAGCGCAAGGGAA
CCAAAAACCAGCCTTCCATGGCCACAACCGGCGCCAGCGCCGCCGGCACC
TGCCGGCGCCGCTGCCATCACCACAGCCGCGGGCGGGCACGCGCCGCTGT
ACCGCGCCCTTGCCTTGCGTCGCCGAGTCCTGCCGCTGTCCCTGCCGCCG
CCGCCGCAGCCGCTGCCGGTCCCGGGCGGCACAGCAGCCGCAGCAGCTGG
C
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7727:1523..2423+

>mRNA_P-wetherbeei_contig7727.2.1 ID=mRNA_P-wetherbeei_contig7727.2.1|Name=mRNA_P-wetherbeei_contig7727.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=708bp|location=Sequence derived from alignment at P-wetherbeei_contig7727:1523..2423+ (Phaeothamnion wetherbeei SAG_119_79)
CGTTCCGCGTTTGGTCTTTGTAAAGTAGCGAGACATGCGCGTCATCGTGC
CCAGCAGCTATTCCGACCCCGGAGCACGAGCCGCGGGCACCACTTCACCT
CTTGCGCCCCTTTCGAGCGAGACTTCGACTGGAACGCCCAATGCGGAGCA
AGTAGGGGCATCCTCCATTGGTGCACAGCCATCTGCGCAGCGCATCAATG
CGCCAGCCGTCGCGGCACGGCCCGCACCGAGAGAAGCGGACGCCAGTCGT
CATTCGGCTGGGTCCTCGGCTGTAAATGCCCTTCCGACCGGCCCACACGC
CGTACGCCCGGGCCGATCATCGGATGGCAAGGAACCTCTTGCCGTCGCGG
CTTCTTCGACGGCTGCGCAACCCGCATCTATTCCCTTCGTAACGGGGTCT
GGATCTGTCCCGCAGCAGCAGAAGGACACTGCCAGGACTGGCGGGGCGTC
CTCAGCGGACGGGATGCGTCCTGCTGGCAGAAGTTCTTCCGGCGCCAGCG
CAAGGGAACCAAAAACCAGCCTTCCATGGCCACAACCGGCGCCAGCGCCG
CCGGCACCTGCCGGCGCCGCTGCCATCACCACAGCCGCGGGCGGGCACGC
GCCGCTGTACCGCGCCCTTGCCTTGCGTCGCCGAGTCCTGCCGCTGTCCC
TGCCGCCGCCGCCGCAGCCGCTGCCGGTCCCGGGCGGCACAGCAGCCGCA
GCAGCTGG
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