mRNA_P-wetherbeei_contig7721.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7721.1.1
Unique NamemRNA_P-wetherbeei_contig7721.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7721.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7721contigP-wetherbeei_contig7721:995..2148 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1032
Hectar predicted targeting categoryother localisation
Exons2
Cds size1032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186997.0484743-CDS-P-wetherbeei_contig7721:994..19241683186997.0484743-CDS-P-wetherbeei_contig7721:994..1924Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7721 995..1924 -
1683186997.0589373-CDS-P-wetherbeei_contig7721:2046..21481683186997.0589373-CDS-P-wetherbeei_contig7721:2046..2148Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7721 2047..2148 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7721.1.1prot_P-wetherbeei_contig7721.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7721 995..2148 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7721.1.1

>prot_P-wetherbeei_contig7721.1.1 ID=prot_P-wetherbeei_contig7721.1.1|Name=mRNA_P-wetherbeei_contig7721.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=344bp
PEILRTVCGVDRALFFLTPKVCFGRKRRGMVDREGEGFAPSASLQRGCER
GSESLLHASGRTEASQEKGQRSTARAWPKPPMTATTGTLFSPYGRQPPKH
RRPSSQMKKRLQRFTIQEEGVNSGSSGRPATAGPLTRARSPYRSVEQRIN
TTRLERAAAPPSPPSPPSSPSSATPSRPLTSLISPAPLRRDARKARFMAG
AAAVPLSAEAYLAAAAATAKRTAAGDAPTASTKPAATRNLTLKMAPNVTA
APELTARPLVGAKKQPFRPLPQPAQEIVVVGRRTNPAEDGPDTTAPVMRS
ILSEHWPSTAEEPIGAAPWQRQRQRQRQQHEAEVAERRALVLAM
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mRNA from alignment at P-wetherbeei_contig7721:995..2148-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7721.1.1 ID=mRNA_P-wetherbeei_contig7721.1.1|Name=mRNA_P-wetherbeei_contig7721.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1154bp|location=Sequence derived from alignment at P-wetherbeei_contig7721:995..2148- (Phaeothamnion wetherbeei SAG_119_79)
CCCGAAATTTTAAGGACAGTGTGCGGAGTTGACCGTGCATTATTTTTTCT
CACACCAAAAGTTTGTTTTGGAAGAAAGCGAAGAGGCATGGTGGATCGCG
AGGTATACCGGTATTTTAGACAGTACATGGAGTTCGACGCGGTATACGAA
TGCTTGCAGATAATATACAAAGTTGCTAAGACATTGCACCGTTCATCTTT
TTGACGGCCCTTTGCTGCGCGCAGGGAGAGGGATTTGCTCCGTCCGCATC
ACTGCAACGCGGGTGTGAGCGAGGCTCCGAGTCACTGCTCCATGCAAGCG
GCCGAACGGAAGCATCGCAGGAGAAGGGTCAGCGCAGTACAGCTCGTGCA
TGGCCGAAACCGCCCATGACTGCTACTACAGGGACATTGTTCTCTCCATA
CGGGCGTCAGCCGCCCAAGCATCGAAGGCCAAGCTCGCAAATGAAAAAGC
GACTTCAGAGGTTCACAATCCAGGAAGAGGGCGTAAACTCCGGTTCGTCC
GGCAGGCCGGCCACGGCAGGCCCTCTGACTCGTGCAAGGAGTCCATACCG
CAGTGTTGAGCAGCGTATTAATACGACGCGACTGGAACGCGCGGCCGCCC
CGCCATCCCCGCCATCCCCGCCATCCTCGCCGTCGTCTGCGACACCGTCG
CGACCATTGACGTCGCTGATATCGCCTGCACCCTTAAGAAGGGATGCCAG
GAAGGCGAGATTTATGGCAGGAGCAGCGGCTGTTCCACTATCGGCGGAGG
CCTATTTGGCAGCCGCGGCAGCAACAGCGAAGCGGACGGCGGCCGGTGAT
GCTCCAACAGCGTCGACGAAACCGGCGGCAACGAGAAACTTAACGTTGAA
AATGGCGCCCAACGTCACTGCAGCGCCGGAGCTGACTGCCAGGCCGCTCG
TGGGAGCGAAGAAGCAGCCATTCCGACCGCTCCCTCAACCGGCGCAAGAA
ATCGTTGTTGTAGGCCGGCGAACAAACCCGGCGGAGGATGGACCGGACAC
AACGGCGCCTGTGATGCGGTCTATCTTGTCGGAACACTGGCCATCGACAG
CGGAGGAGCCCATTGGGGCAGCGCCGTGGCAGCGGCAGCGCCAGCGGCAG
CGACAGCAGCACGAGGCCGAGGTGGCCGAGCGCCGTGCGTTAGTTCTCGC
GATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7721:995..2148-

>mRNA_P-wetherbeei_contig7721.1.1 ID=mRNA_P-wetherbeei_contig7721.1.1|Name=mRNA_P-wetherbeei_contig7721.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1032bp|location=Sequence derived from alignment at P-wetherbeei_contig7721:995..2148- (Phaeothamnion wetherbeei SAG_119_79)
CCCGAAATTTTAAGGACAGTGTGCGGAGTTGACCGTGCATTATTTTTTCT
CACACCAAAAGTTTGTTTTGGAAGAAAGCGAAGAGGCATGGTGGATCGCG
AGGGAGAGGGATTTGCTCCGTCCGCATCACTGCAACGCGGGTGTGAGCGA
GGCTCCGAGTCACTGCTCCATGCAAGCGGCCGAACGGAAGCATCGCAGGA
GAAGGGTCAGCGCAGTACAGCTCGTGCATGGCCGAAACCGCCCATGACTG
CTACTACAGGGACATTGTTCTCTCCATACGGGCGTCAGCCGCCCAAGCAT
CGAAGGCCAAGCTCGCAAATGAAAAAGCGACTTCAGAGGTTCACAATCCA
GGAAGAGGGCGTAAACTCCGGTTCGTCCGGCAGGCCGGCCACGGCAGGCC
CTCTGACTCGTGCAAGGAGTCCATACCGCAGTGTTGAGCAGCGTATTAAT
ACGACGCGACTGGAACGCGCGGCCGCCCCGCCATCCCCGCCATCCCCGCC
ATCCTCGCCGTCGTCTGCGACACCGTCGCGACCATTGACGTCGCTGATAT
CGCCTGCACCCTTAAGAAGGGATGCCAGGAAGGCGAGATTTATGGCAGGA
GCAGCGGCTGTTCCACTATCGGCGGAGGCCTATTTGGCAGCCGCGGCAGC
AACAGCGAAGCGGACGGCGGCCGGTGATGCTCCAACAGCGTCGACGAAAC
CGGCGGCAACGAGAAACTTAACGTTGAAAATGGCGCCCAACGTCACTGCA
GCGCCGGAGCTGACTGCCAGGCCGCTCGTGGGAGCGAAGAAGCAGCCATT
CCGACCGCTCCCTCAACCGGCGCAAGAAATCGTTGTTGTAGGCCGGCGAA
CAAACCCGGCGGAGGATGGACCGGACACAACGGCGCCTGTGATGCGGTCT
ATCTTGTCGGAACACTGGCCATCGACAGCGGAGGAGCCCATTGGGGCAGC
GCCGTGGCAGCGGCAGCGCCAGCGGCAGCGACAGCAGCACGAGGCCGAGG
TGGCCGAGCGCCGTGCGTTAGTTCTCGCGATG
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