mRNA_P-wetherbeei_contig772.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig772.1.1
Unique NamemRNA_P-wetherbeei_contig772.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig772.1.1 vs. uniprot
Match: D7FKD1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKD1_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 3.860e-44
Identity = 75/160 (46.88%), Postives = 102/160 (63.75%), Query Frame = 1 
Query:    1 CTSPGYKKKLGINDHTYVCLVVNSVDW---SNSTQYSQLVINPKSDRFSRFNIPGSWEGE-VGAEDKLLAKYGSQVAFHVESEGVISYQKMFRDTENNRTFNIFTAIVTVDTGEVTGIAWDDGCHYCLGETCDFNTYTYDG-LLANTTNGEDCWWSNDDC 465
            C     K  + I + T VCLVVN + W   ++ T YSQ++I P +D FSRF++ GSW    V  +D +L  +G++V  HVES G  S+QK FR  E  +TF + TAI++VD GEVTGI+WDDGCH+C    C+ NTY Y G L+    NG+DC+W + DC
Sbjct:   40 CVLSSGKTDVTIGEETSVCLVVNGLGWEVDADLTFYSQVLILPDADEFSRFSVKGSWNASRVIEDDPILTTFGTEVGVHVESMGKYSFQKAFRLREEEKTFPLHTAIISVDEGEVTGISWDDGCHFCGSSQCEDNTYDYTGQLIGGEGNGQDCYWPDSDC 199
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BLAST of mRNA_P-wetherbeei_contig772.1.1 vs. uniprot
Match: A0A835ZB01_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB01_9STRA)

HSP 1 Score: 149 bits (375), Expect = 8.850e-42
Identity = 77/160 (48.12%), Postives = 97/160 (60.62%), Query Frame = 1 
Query:    1 CTSPGYKKKLGINDHTYVCLVVNSVDWSNSTQYSQLVINPKSDRFSRFNIPGSWEGEVGAE----DKLLAKYGSQVAFHVESEGVISYQKMFRDTENNRTFNIFTAIVTVDTGEVTGIAWDDGCHYCLGETCDFNTYTYDGLLANTT------NGEDCWW 450
            CT+     K+G  + T VCL+VN +D+  +T YSQ+ I P +D FSRF IPGSW  E  A     D LL KYG  VAFHVES GV S+QK FR      TF +FTAI+ VD G +T I WDDGCH+C  + C  NT+ + G   NTT       G+DC++
Sbjct:   37 CTTGAELVKVG--NTTAVCLIVNPLDYDTATNYSQISIFPAADSFSRFVIPGSWSAEYAASGTQTDPLLQKYGKDVAFHVESNGVASFQKSFRQASLGITFPLFTAIINVDRGNITSITWDDGCHFCARQFCQANTFNFAG--TNTTADGQALGGKDCYY 192
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BLAST of mRNA_P-wetherbeei_contig772.1.1 vs. uniprot
Match: W7TT05_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TT05_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 6.110e-19
Identity = 52/144 (36.11%), Postives = 78/144 (54.17%), Query Frame = 1 
Query:   46 TYVCLVVNSVDWSNSTQ-YSQLVINPKSDRFSRFNIPGSWEGEVGAEDKLLAKYGSQVAFHVESEGVISYQKMFRDTEN-NRTFNIFTAIVTVDTGEVTGIAWDDGCHYC-LGETCDFNTYTYDGLLANTTNG-EDCWWSNDDC 465
            TYVC+V ++  W   T  +S++   P  DRF+R     ++          L  YG  VA HVES GV S+QK++R  ++  RTF++ TAI+ +D G VTGI +D+GC  C   + C  NTY + G          DC+ ++ +C
Sbjct:   48 TYVCIVFSAPAWQEGTSNFSRVAFTPTVDRFTRLQFSDTFSNLTSQGVANL--YGPNVAVHVESMGVASFQKLYRQEDSLGRTFSVLTAIINLDRGVVTGITFDNGCPLCDNSDRCVENTYDFTGERYTGVGATSDCFLTDAEC 189
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig772.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FKD1_ECTSI3.860e-4446.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZB01_9STRA8.850e-4248.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TT05_9STRA6.110e-1936.11Uncharacterized protein n=2 Tax=Nannochloropsis ga... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig772contigP-wetherbeei_contig772:4..667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FKD1
Model size465
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.33e-45
EggNOG OGs2AMNC@1|root,2RZCH@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_005750.1
Cds size465
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186996.9746406-CDS-P-wetherbeei_contig772:3..3111683186996.9746406-CDS-P-wetherbeei_contig772:3..311Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig772 4..311 -
1683186996.9836419-CDS-P-wetherbeei_contig772:510..6671683186996.9836419-CDS-P-wetherbeei_contig772:510..667Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig772 511..667 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig772.1.1prot_P-wetherbeei_contig772.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig772 4..667 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig772.1.1

>prot_P-wetherbeei_contig772.1.1 ID=prot_P-wetherbeei_contig772.1.1|Name=mRNA_P-wetherbeei_contig772.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=155bp
CTSPGYKKKLGINDHTYVCLVVNSVDWSNSTQYSQLVINPKSDRFSRFNI
PGSWEGEVGAEDKLLAKYGSQVAFHVESEGVISYQKMFRDTENNRTFNIF
TAIVTVDTGEVTGIAWDDGCHYCLGETCDFNTYTYDGLLANTTNGEDCWW
SNDDC
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mRNA from alignment at P-wetherbeei_contig772:4..667-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig772.1.1 ID=mRNA_P-wetherbeei_contig772.1.1|Name=mRNA_P-wetherbeei_contig772.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=664bp|location=Sequence derived from alignment at P-wetherbeei_contig772:4..667- (Phaeothamnion wetherbeei SAG_119_79)
TGCACTTCGCCCGGGTACAAGAAGAAGCTGGGCATCAATGACCACACTTA
CGTGTGCCTCGTCGTCAACAGCGTCGACTGGTCAAACTCCACGCAGTACT
CGCAACTCGTCATCAACCCCAAGTCTGACCGGTTCAGCAGGTTCAACATT
CCCGGATGTGAGCCAGCAGACGAAGAAGGAAACTAAAGCCTCCCAACCTG
CCCCGTCGCCGCTTTTTTTTTACAACGCATCGCATTCTCGCCTCGCTTGA
CATATTTTGCAGCGTGGTCTTGCGCTCAAACGTGCGGAGTGCTGGGGGGG
ATGCGGCGCTGGCAAACCAACCGACCAAACCGCGTTTCTCTTTGCCTCTG
TTCTAGCATGGGAGGGCGAGGTTGGTGCCGAGGACAAGCTGCTGGCCAAG
TACGGCAGCCAGGTGGCGTTCCACGTGGAAAGCGAGGGCGTCATCTCGTA
CCAGAAGATGTTCCGGGACACGGAGAACAACCGCACCTTCAACATCTTCA
CGGCCATTGTCACGGTCGACACGGGCGAGGTGACGGGCATCGCTTGGGAC
GATGGCTGCCACTACTGCCTCGGAGAGACGTGCGACTTCAACACGTATAC
GTACGACGGGCTGCTCGCCAACACCACCAACGGCGAGGATTGCTGGTGGT
CCAATGACGACTGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig772:4..667-

>mRNA_P-wetherbeei_contig772.1.1 ID=mRNA_P-wetherbeei_contig772.1.1|Name=mRNA_P-wetherbeei_contig772.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=465bp|location=Sequence derived from alignment at P-wetherbeei_contig772:4..667- (Phaeothamnion wetherbeei SAG_119_79)
TGCACTTCGCCCGGGTACAAGAAGAAGCTGGGCATCAATGACCACACTTA
CGTGTGCCTCGTCGTCAACAGCGTCGACTGGTCAAACTCCACGCAGTACT
CGCAACTCGTCATCAACCCCAAGTCTGACCGGTTCAGCAGGTTCAACATT
CCCGGATCATGGGAGGGCGAGGTTGGTGCCGAGGACAAGCTGCTGGCCAA
GTACGGCAGCCAGGTGGCGTTCCACGTGGAAAGCGAGGGCGTCATCTCGT
ACCAGAAGATGTTCCGGGACACGGAGAACAACCGCACCTTCAACATCTTC
ACGGCCATTGTCACGGTCGACACGGGCGAGGTGACGGGCATCGCTTGGGA
CGATGGCTGCCACTACTGCCTCGGAGAGACGTGCGACTTCAACACGTATA
CGTACGACGGGCTGCTCGCCAACACCACCAACGGCGAGGATTGCTGGTGG
TCCAATGACGACTGC
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