mRNA_P-wetherbeei_contig7718.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7718.2.1
Unique NamemRNA_P-wetherbeei_contig7718.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7718.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7718contigP-wetherbeei_contig7718:1614..2722 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size783
Hectar predicted targeting categorysignal peptide
Exons3
Cds size423
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186996.870303-UTR-P-wetherbeei_contig7718:1613..18681683186996.870303-UTR-P-wetherbeei_contig7718:1613..1868Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7718 1614..1868 -
1683186996.9028313-UTR-P-wetherbeei_contig7718:2617..27221683186996.9028313-UTR-P-wetherbeei_contig7718:2617..2722Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7718 2618..2722 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186996.8788712-CDS-P-wetherbeei_contig7718:1868..20251683186996.8788712-CDS-P-wetherbeei_contig7718:1868..2025Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7718 1869..2025 -
1683186996.8867884-CDS-P-wetherbeei_contig7718:2191..22841683186996.8867884-CDS-P-wetherbeei_contig7718:2191..2284Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7718 2192..2284 -
1683186996.8948035-CDS-P-wetherbeei_contig7718:2444..26171683186996.8948035-CDS-P-wetherbeei_contig7718:2444..2617Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7718 2445..2617 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7718.2.1prot_P-wetherbeei_contig7718.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7718 1869..2617 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7718.2.1

>prot_P-wetherbeei_contig7718.2.1 ID=prot_P-wetherbeei_contig7718.2.1|Name=mRNA_P-wetherbeei_contig7718.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=141bp
MFKPLSRPRRRFFPSLFPFCVLLLFSLPMDPSQNLPGIRNSFPTWRRPIA
SGTRAPSRHAEAFQSILTTTSKGALCHSARRSWRKAAIRRSATRAATTSH
GTRTAPSAAEYRFSGSASGSRGTSISWERIMCCRLVGTKF*
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mRNA from alignment at P-wetherbeei_contig7718:1614..2722-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7718.2.1 ID=mRNA_P-wetherbeei_contig7718.2.1|Name=mRNA_P-wetherbeei_contig7718.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1109bp|location=Sequence derived from alignment at P-wetherbeei_contig7718:1614..2722- (Phaeothamnion wetherbeei SAG_119_79)
GCAACCCGTCTTGACGCCGACTGGATTTTTTTCTTTTGCCCCCCAAAAAC
TTTGGGACCAGTTTAATCTGAAAGCGGGGATAGTTTCTGTTCAAGCACTG
TATAGATGTTTAAGCCTCTGAGTCGGCCACGACGTCGTTTTTTCCCTTCT
CTGTTTCCCTTCTGTGTTCTCCTTCTCTTTTCCCTTCCCATGGATCCGTC
GCAAAACCTTCCAGGAATAAGGAATTCATTCCCGACCTGGCGGCGTCCGA
TAGCAAGTGGAACCCGTGCTCCCTCAAGGTGAGTTGTTTGCTCTGGGGCC
CTGGGGCAAACTGAAATGAATCTGTGAGGCTATGCGGATTGATATTTAAG
CATCACTGGTTCGTTCGTTTCCCTACTTTTCACTGTACTTCTTTCTTCCC
CCCATGTTCCCCCATTTGACGGATGATGCTGCGATCAGGCATGCCGAGGC
TTTTCAATCGATATTGACGACTACCAGCAAGGGTGCTTTGTGTCACAGTG
CCCGCCGGAGCTGGAGGAAAGCGGCGATCAGGTAAAGTCCATGAGCCCTT
CCCCGCAGAAACCTCTTTCTGTAGCGGTGTTTCGTTGAAGTGTGATAAGT
CGGCACCATTGTGTTTGGGGGCTGTTGGGTGAACGAGTTTATAAGACGGC
CCTGGATGCTCCTCCATTCTCTTCCCGTTGAACCAAACACCCGACAGACG
AAGTGCCACGAGAGCTGCCACCACTTCACATGGGACGCGGACGGCGCCAA
GTGCTGCCGAGTATCGCTTTTCGGGATCTGCCTCGGGAAGCAGAGGAACG
TCGATTTCGTGGGAAAGGATTATGTGCTGCCGACTAGTGGGGACCAAGTT
TTGAGGCCTGCGTGAGCGCCGAGAGCATGCTCATATCACCAATTCCCACC
AGAGCCACGCTTGCGGCAAAGCGAATGTTTGTGCATATGTAGATATATGA
TTAGGGCTAGGAGCTTGGGAGATATATTTGCGTGTGGAACGTGAGATTCG
GTGTAGGCAAAGAACCGATAGCAACAGGTCATGCATGTATCAGTGGGCGC
CACGCTGCCCACTCATTATCCACATCCATACCACAGCAGTAATGAAGGCA
ACATATTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7718:1614..2722-

>mRNA_P-wetherbeei_contig7718.2.1 ID=mRNA_P-wetherbeei_contig7718.2.1|Name=mRNA_P-wetherbeei_contig7718.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig7718:1614..2722- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTAAGCCTCTGAGTCGGCCACGACGTCGTTTTTTCCCTTCTCTGTT
TCCCTTCTGTGTTCTCCTTCTCTTTTCCCTTCCCATGGATCCGTCGCAAA
ACCTTCCAGGAATAAGGAATTCATTCCCGACCTGGCGGCGTCCGATAGCA
AGTGGAACCCGTGCTCCCTCAAGGCATGCCGAGGCTTTTCAATCGATATT
GACGACTACCAGCAAGGGTGCTTTGTGTCACAGTGCCCGCCGGAGCTGGA
GGAAAGCGGCGATCAGACGAAGTGCCACGAGAGCTGCCACCACTTCACAT
GGGACGCGGACGGCGCCAAGTGCTGCCGAGTATCGCTTTTCGGGATCTGC
CTCGGGAAGCAGAGGAACGTCGATTTCGTGGGAAAGGATTATGTGCTGCC
GACTAGTGGGGACCAAGTTTTGA
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