mRNA_P-wetherbeei_contig7712.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7712.1.1
Unique NamemRNA_P-wetherbeei_contig7712.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7712.1.1 vs. uniprot
Match: D7G0G0_ECTSI (ILEI domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G0_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 4.900e-40
Identity = 162/456 (35.53%), Postives = 207/456 (45.39%), Query Frame = 3 
Query:  186 ADLLEEDFKWLETTTATLFNDDFIEGACEQLDEVDKSAXXXXXXXXXXXXXXXXXAVPITSC--TRAGQRMLQLFASQTE------------HAVTHVEDFAALSGARSLEGLYGRTA-RQRYRVLLRIHAALLRQNERLAATAK-----QGAAAATVASASDGGFAVDSAADETL--ESDPNAILTGASIRMSLVLMKALRGSVPGLFQEMARSLGALLAATAPFALAEV-PSVACRDSLRALKAFVLEVAAPASMPVGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLALGVARGSLDDVVAVVSCLLGDGAPPLPPSAAGPWTALMKHRQPLTLPVPAPADTAASFTARLEGERPEAVASATALA---------------------------VDGSYLYVWDADAAAVLKIGTGFHGTIAGSVYARNGDVIAQVRAAKGVKAAAP 1403
            AD++EED KWL    + LFNDDF+E     L   + +                   V +       A +RMLQL   Q +               T VEDF  L G   L      TA R R R+  RIH AL+RQ  R     K     +G A A  AS++   FA+  +++E    ESDP AILT AS+RMSL LM ALR +VPGLF  MA++L  L  A+APFAL +V  S A  ++L  ++    EVA   +    GS                                 LLL+LGVA GS+ DVV V   LL    P LPPSA+GP   L  H  P  + +P P    ASF ARL+ E      S  + A                            DG Y+YVWDAD   V K+GTGFHGT+AG+VY  +  V+  +R  KG++ A P
Sbjct:   16 ADVVEEDLKWLSVKGSMLFNDDFLEEEYTSLPPYEGTEMLPVQGNDGSPGLSAEADVGVGGLHGQDAVRRMLQLLRPQQDLPNGTAGADTGNGEGTSVEDFPPLLGESYLRASTHSTATRMRSRLFQRIHVALMRQAFRTMRRMKAEAGGKGGAGALAASSA---FALPPSSNEEGRGESDPAAILTSASMRMSLTLMGALRATVPGLFASMAQTLMDLFQASAPFALGQVGSSSAYLETLTQVR----EVAERVATVESGSSKDERTQAVA-----------------------LLLSLGVATGSVSDVVRVAMLLLELDVPALPPSASGPLEQLRNHSTPPKVSIPKPGTWTASFPARLDTEAEGTSGSTPSSARRXXXXXXXXXXXXXXXXXXXXCCNPATDGVYVYVWDADTKRVHKVGTGFHGTLAGNVYLSSKKVLDDIRVFKGMEPAPP 441
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BLAST of mRNA_P-wetherbeei_contig7712.1.1 vs. uniprot
Match: A0A6H5K114_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K114_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 5.980e-30
Identity = 131/354 (37.01%), Postives = 165/354 (46.61%), Query Frame = 3 
Query:  429 THVEDFAALSGARSLEG-LYGRTARQRYRVLLRIHAALLRQNERLAATAKQGAAAATVASASDGGFAVDSAADETL--ESDPNAILTGASIRMSLVLMKALRGSVPGLFQEMARSLGALLAATAPFALAEV-PSVACRDSLRALKAFVLEVAAPASMPVGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLALGVARGSLDDVVAVVSCLLGDGAPPLPPSAAGPWTALMKHRQPLTLPVPAPADTAASFTARLEGERPEAVASATALA---------------------------VDGSYLYVWDADAAAVLKIGTGFHGTIAGSVYARNGDVIAQVRAAKGVKAA 1397
            T VEDF  L G   L    +  T R R R+          Q E   A  K GA A   +SA    FA+  ++ E    ESDP AILT AS+RMSL LM ALR +VPGLF  MA++L  L  A+APFAL +V  S A  ++L  ++    EVA   +    GS                                 LLL+LGVA GS+ DV+ V   LL   AP LPPSA+GP   L  H  P  + +P P    ASF ARL+ E      S  + A                            DG Y+YVWDAD   V K+GTGFHGT+AG+VY  +  V+  +R  KG++ A
Sbjct:   80 TSVEDFPPLLGKSYLRASTHSTTTRMRSRLF---------QAE---AGGKGGAGALAASSA----FALPPSSTEEGRGESDPAAILTSASMRMSLTLMGALRATVPGLFASMAQTLMDLFQASAPFALGQVGSSSAYLETLTQVR----EVAERVATVESGSSKDERTQAVA-----------------------LLLSLGVATGSVSDVLRVAMLLLERDAPALPPSASGPLEQLRNHSTPPKVSIPKPGTWTASFPARLDTEAEGTSGSTPSSARRGXXXXXXXXXXXXXXXXXXXCCNPATDGVYVYVWDADTKRVHKVGTGFHGTLAGNVYMSSKKVLDDIRVFKGMEPA 390
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BLAST of mRNA_P-wetherbeei_contig7712.1.1 vs. uniprot
Match: A0A835Z6H0_9STRA (ILEI domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6H0_9STRA)

HSP 1 Score: 106 bits (265), Expect = 3.100e-20
Identity = 133/429 (31.00%), Postives = 175/429 (40.79%), Query Frame = 3 
Query:  159 MGNISTSP---VADLLEEDFKWLETTTATLFNDDFIEGACEQLDE-----VDKSAXXXXXXXXXXXXXXXXXAVPITSCTRAGQRMLQLFASQTEHAV-THVEDFAALSGARSLEGLYGRTARQRYRVLLRIHAALLRQNERLAATAKQGAAAATVASASDGGFAVDSAADETLESDP--NAILTGASIRMSLVLMKALRGSVPGLFQEMARSLGALLAATAPFALAEVPSVACRDSLRALKAFVLEVAAPASMPVGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLALGVARGSLDDVVAVVSCLLGDGAPPLPPSAAGPWTALMKHRQPLTLPVPAPADTAASFTARL-EGERPEAVA---------SATALAVDGSYLYVWDADAAAVLKIGTGFHGTIAGSVYARNGDVIAQVRAAK 1382
            MGN+   P    +D++E+D KWL    + L NDDF+E     L +     +D         XXXXXXXXXXX       TR   R+ Q+F   T +   T V+ F ALS         G  A  R RVL R+H AL+RQ                                           +    S+ M++ +++ LR   PGLF   A +L AL  A  P AL    S A   +L AL+   L++AA  +                                       LLL+LG ARGS+ D +A  +CL+  GAPPLPP A     AL +      L +P     A SF  R  EG                +   LA DG YLY+W+     V K+GTGFHGTIAG VYA    ++  + A K
Sbjct:    1 MGNVQQHPSWDASDVVEDDVKWLGIGLSALMNDDFVEDEYSDLPDFPNTSIDADGSPASAGXXXXXXXXXXXXXXXXQVTR---RLAQMFEKTTANRPPTTVDSFPALSCEAGSSS--GTLAVMRSRVLQRVHMALMRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEVFAATSMSMNVSVIRELRAVCPGLFAHTAANLMALFDAQGPCALMNCTSAAYSTALDALRGLALDIAAAPAXXXXXXGDAASAIA-------------------------LLLSLGAARGSIADTLAAAACLMRAGAPPLPPPARRLVQALARRGVASALSLPEGDQAAESFAVRWGEGGAXXXXXXXXXXXSGHAVQGLATDGVYLYMWEESVQGVAKVGTGFHGTIAGHVYATFPQLLTAIAALK 399
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7712.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0G0_ECTSI4.900e-4035.53ILEI domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K114_9PHAE5.980e-3037.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z6H0_9STRA3.100e-2031.00ILEI domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7712contigP-wetherbeei_contig7712:3..2318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G0G0
PFAMsZZ
Model size1650
Max annot lvl2759|Eukaryota
KEGG koko:K21991
Hectar predicted targeting categoryother localisation
Exons4
Evalue3.86e-41
EggNOG OGsCOG5184@1|root,KOG1426@2759|Eukaryota
Descriptionguanyl-nucleotide exchange factor activity
Cds size1491
COG categoryDZ
BRITEko00000,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186996.4755404-CDS-P-wetherbeei_contig7712:2..9621683186996.4755404-CDS-P-wetherbeei_contig7712:2..962Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7712 3..962 -
1683186996.4888039-CDS-P-wetherbeei_contig7712:1232..17001683186996.4888039-CDS-P-wetherbeei_contig7712:1232..1700Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7712 1233..1700 -
1683186996.5006762-CDS-P-wetherbeei_contig7712:1849..19121683186996.5006762-CDS-P-wetherbeei_contig7712:1849..1912Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7712 1850..1912 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186996.5114207-UTR-P-wetherbeei_contig7712:1912..19311683186996.5114207-UTR-P-wetherbeei_contig7712:1912..1931Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7712 1913..1931 -
1683186996.5217085-UTR-P-wetherbeei_contig7712:2179..23181683186996.5217085-UTR-P-wetherbeei_contig7712:2179..2318Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7712 2180..2318 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7712.1.1prot_P-wetherbeei_contig7712.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7712 3..1912 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7712.1.1

>prot_P-wetherbeei_contig7712.1.1 ID=prot_P-wetherbeei_contig7712.1.1|Name=mRNA_P-wetherbeei_contig7712.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=497bp
MGNISTSPVADLLEEDFKWLETTTATLFNDDFIEGACEQLDEVDKSAAAA
AAAAAAVTANAANAAVPITSCTRAGQRMLQLFASQTEHAVTHVEDFAALS
GARSLEGLYGRTARQRYRVLLRIHAALLRQNERLAATAKQGAAAATVASA
SDGGFAVDSAADETLESDPNAILTGASIRMSLVLMKALRGSVPGLFQEMA
RSLGALLAATAPFALAEVPSVACRDSLRALKAFVLEVAAPASMPVGGSAA
AAGSAAAITAAAPSAAAATAAGAEERAEAAALLLALGVARGSLDDVVAVV
SCLLGDGAPPLPPSAAGPWTALMKHRQPLTLPVPAPADTAASFTARLEGE
RPEAVASATALAVDGSYLYVWDADAAAVLKIGTGFHGTIAGSVYARNGDV
IAQVRAAKGVKAAAPGAEAAAMDAAEDGGGSSGGSGGGDGDGAAAAGGGI
GGGPGVTARPRRFRALHTIILLMPDWANVTEADDDADEENYQFAELT
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mRNA from alignment at P-wetherbeei_contig7712:3..2318-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7712.1.1 ID=mRNA_P-wetherbeei_contig7712.1.1|Name=mRNA_P-wetherbeei_contig7712.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2316bp|location=Sequence derived from alignment at P-wetherbeei_contig7712:3..2318- (Phaeothamnion wetherbeei SAG_119_79)
TTCTGGAGGCTTTTCCTGACTGTGATATTTGCCAGTCTTGCAATTTGGCT
TGCGGATTCTGCGTGATCTCGTTTTTGCTACATTAGAAACCCCCCGTTGC
CGCCGCACCGGTGGTGACGGAGGTAGATTTTAGACGAGGGTGAGCACACT
TACCCGCGAGACCTTTCTTCGCGCATCATATGTCTTTTTAAACATCATCA
GTGGTTCCTTTGTGCCTTTCACACACTAGCTCTTTGTTTGCCATCCTTGC
AACAATACCGTTTTGTTGTGGTTGGAACTTCGGTTTCGCTCTTGTCGAGG
AAGCGTGCGTTTGCGATCATCGCTCACGGCCAGCAATGCAAAACCGTTTG
GCAAACGATTCTTATTGCAATGCTTATTCCCACGCAGACTCCATCCGTCG
TACAAGATGGGGAATATCTCAACTTCACCTGTGGCCGATTTGCTCGAAGA
AGACTTCAAATGGCTCGAGGTAACACCACTAGTCGTGGGTTTTGAGTCTG
TATTTGTGCCTTCAGCCCTCTATCCCCTCAGAGTCGTCTTCTCGCCACAC
GTCCGCCTCGGAGCCCTCAACGATTCCCAAAATCTCTGTCGCGGCTTCGT
CCTTCCTGTCCCCCGCAGACGACGACGGCAACACTCTTCAACGACGACTT
CATCGAGGGCGCATGCGAGCAGCTGGACGAAGTCGACAAGTCCGCAGCCG
CCGCGGCCGCGGCGGCCGCCGCAGTCACTGCCAACGCCGCCAATGCTGCT
GTGCCCATCACTTCCTGCACACGGGCCGGCCAGCGGATGCTGCAGCTCTT
CGCGTCGCAGACGGAGCACGCCGTCACCCACGTCGAGGACTTCGCGGCGC
TCTCCGGCGCCCGCAGCCTCGAAGGCCTATACGGGCGCACAGCCCGCCAG
CGGTACCGTGTCCTGCTTCGGATCCACGCTGCGCTGCTGCGCCAGAACGA
GCGACTAGCGGCGACGGCCAAGCAGGGCGCAGCAGCGGCGACGGTGGCGT
CGGCGAGCGACGGCGGGTTTGCTGTGGACTCGGCGGCGGACGAGACGCTG
GAGTCGGATCCGAACGCGATCTTGACTGGCGCCTCGGTGAGTGCAGCGTT
TTGGTCTTTCTAAATTGAGCGAATGAGGCTCTGGTTTTCGCCAAACAGGG
GATTTTTGGTTTGTTTATGCGCCTGGCGCATCTCTATGACGTTGCTTTGG
TACTTGTCGATGAAGTCGGATGCGAAGGATCACCCTCAAAAACAAGAGTA
CTCTTATAACGGTTTTGCCTCTCTGAAGATAACCACTTGTTTCTGCTCTA
CAATCACCGTCTCATCTGGCTTTCTTCTATTCTTTTGCCCTTTGCAACAT
GTCCAGATCCGCATGTCGCTAGTGCTGATGAAGGCGCTGCGCGGCTCAGT
GCCGGGCCTTTTCCAGGAGATGGCGCGCTCCCTGGGGGCCCTCCTGGCGG
CCACGGCGCCCTTCGCGCTTGCCGAGGTGCCCTCCGTCGCCTGCCGCGAC
AGCCTCCGCGCCCTCAAGGCCTTCGTTCTCGAGGTGGCGGCGCCGGCATC
GATGCCGGTCGGGGGATCTGCGGCGGCGGCGGGCTCCGCCGCCGCGATTA
CCGCAGCAGCTCCCTCCGCCGCTGCCGCCACCGCCGCCGGCGCGGAGGAG
CGAGCGGAGGCGGCGGCGCTGCTGCTGGCGCTGGGTGTGGCGCGAGGGTC
GCTGGACGATGTTGTGGCGGTTGTCTCGTGCCTTCTCGGCGACGGGGCGC
CACCGCTGCCGCCGTCGGCGGCGGGGCCATGGACCGCGCTCATGAAGCAC
CGCCAGCCGCTGACGCTGCCCGTGCCGGCGCCGGCCGACACTGCGGCGTC
GTTCACGGCGCGGCTGGAAGGGGAGCGGCCCGAGGCCGTGGCGTCCGCGA
CGGCGCTGGCGGTGGACGGCTCCTACCTCTACGTCTGGGACGCGGACGCC
GCAGCCGTGCTCAAGATCGGGACGGGCTTCCACGGGACAATTGCCGGCTC
TGTGTACGCGCGCAATGGTGACGTGATCGCGCAGGTCCGCGCCGCCAAGG
GCGTCAAGGCGGCGGCGCCGGGGGCAGAGGCGGCAGCGATGGATGCTGCC
GAGGATGGCGGCGGTAGCAGCGGCGGCAGCGGGGGCGGCGATGGTGACGG
AGCTGCTGCAGCTGGTGGGGGCATCGGCGGCGGGCCGGGCGTGACCGCTC
GGCCGCGCCGGTTCCGGGCCCTTCACACCATCATACTACTGATGCCGGAC
TGGGCCAACGTCACCGAAGCAGACGACGACGCGGATGAGGAGAACTACCA
GTTTGCCGAATTGACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7712:3..2318-

>mRNA_P-wetherbeei_contig7712.1.1 ID=mRNA_P-wetherbeei_contig7712.1.1|Name=mRNA_P-wetherbeei_contig7712.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1491bp|location=Sequence derived from alignment at P-wetherbeei_contig7712:3..2318- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGAATATCTCAACTTCACCTGTGGCCGATTTGCTCGAAGAAGACTT
CAAATGGCTCGAGACGACGACGGCAACACTCTTCAACGACGACTTCATCG
AGGGCGCATGCGAGCAGCTGGACGAAGTCGACAAGTCCGCAGCCGCCGCG
GCCGCGGCGGCCGCCGCAGTCACTGCCAACGCCGCCAATGCTGCTGTGCC
CATCACTTCCTGCACACGGGCCGGCCAGCGGATGCTGCAGCTCTTCGCGT
CGCAGACGGAGCACGCCGTCACCCACGTCGAGGACTTCGCGGCGCTCTCC
GGCGCCCGCAGCCTCGAAGGCCTATACGGGCGCACAGCCCGCCAGCGGTA
CCGTGTCCTGCTTCGGATCCACGCTGCGCTGCTGCGCCAGAACGAGCGAC
TAGCGGCGACGGCCAAGCAGGGCGCAGCAGCGGCGACGGTGGCGTCGGCG
AGCGACGGCGGGTTTGCTGTGGACTCGGCGGCGGACGAGACGCTGGAGTC
GGATCCGAACGCGATCTTGACTGGCGCCTCGATCCGCATGTCGCTAGTGC
TGATGAAGGCGCTGCGCGGCTCAGTGCCGGGCCTTTTCCAGGAGATGGCG
CGCTCCCTGGGGGCCCTCCTGGCGGCCACGGCGCCCTTCGCGCTTGCCGA
GGTGCCCTCCGTCGCCTGCCGCGACAGCCTCCGCGCCCTCAAGGCCTTCG
TTCTCGAGGTGGCGGCGCCGGCATCGATGCCGGTCGGGGGATCTGCGGCG
GCGGCGGGCTCCGCCGCCGCGATTACCGCAGCAGCTCCCTCCGCCGCTGC
CGCCACCGCCGCCGGCGCGGAGGAGCGAGCGGAGGCGGCGGCGCTGCTGC
TGGCGCTGGGTGTGGCGCGAGGGTCGCTGGACGATGTTGTGGCGGTTGTC
TCGTGCCTTCTCGGCGACGGGGCGCCACCGCTGCCGCCGTCGGCGGCGGG
GCCATGGACCGCGCTCATGAAGCACCGCCAGCCGCTGACGCTGCCCGTGC
CGGCGCCGGCCGACACTGCGGCGTCGTTCACGGCGCGGCTGGAAGGGGAG
CGGCCCGAGGCCGTGGCGTCCGCGACGGCGCTGGCGGTGGACGGCTCCTA
CCTCTACGTCTGGGACGCGGACGCCGCAGCCGTGCTCAAGATCGGGACGG
GCTTCCACGGGACAATTGCCGGCTCTGTGTACGCGCGCAATGGTGACGTG
ATCGCGCAGGTCCGCGCCGCCAAGGGCGTCAAGGCGGCGGCGCCGGGGGC
AGAGGCGGCAGCGATGGATGCTGCCGAGGATGGCGGCGGTAGCAGCGGCG
GCAGCGGGGGCGGCGATGGTGACGGAGCTGCTGCAGCTGGTGGGGGCATC
GGCGGCGGGCCGGGCGTGACCGCTCGGCCGCGCCGGTTCCGGGCCCTTCA
CACCATCATACTACTGATGCCGGACTGGGCCAACGTCACCGAAGCAGACG
ACGACGCGGATGAGGAGAACTACCAGTTTGCCGAATTGACG
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