mRNA_P-wetherbeei_contig771.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig771.2.1
Unique NamemRNA_P-wetherbeei_contig771.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig771.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig771contigP-wetherbeei_contig771:3972..4831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size861
Hectar predicted targeting categoryother localisation
Exons1
Cds size795
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186996.3614314-CDS-P-wetherbeei_contig771:3971..47661683186996.3614314-CDS-P-wetherbeei_contig771:3971..4766Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig771 3972..4766 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186996.3719668-UTR-P-wetherbeei_contig771:4766..48311683186996.3719668-UTR-P-wetherbeei_contig771:4766..4831Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig771 4767..4831 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig771.2.1prot_P-wetherbeei_contig771.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig771 3972..4766 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig771.2.1

>prot_P-wetherbeei_contig771.2.1 ID=prot_P-wetherbeei_contig771.2.1|Name=mRNA_P-wetherbeei_contig771.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=265bp
MRGRAPLRDSHRQLLNAIDKKDTATAPHRSHPAARGLYALSFPPGPLGLE
LESVNDGAGCRVSRVLASCPNRDVVAVGDVVVSFGGGSDSSHNTMEPLSF
HRALQRLQESASRSKTLLLCRDSVVFKATAAADAPTRDKSTRPHGALTVG
QQNGFGIGNIAAKPGRGDVVTAILSGSKNSARGRVFAPSLSLSPSLQAAP
AALDDGASGSTSGLKSVGGNYRDSSGLGGGSSSLDSDISAKFSSSASLLG
QSWSGPISSAPSDRW
back to top

mRNA from alignment at P-wetherbeei_contig771:3972..4831-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig771.2.1 ID=mRNA_P-wetherbeei_contig771.2.1|Name=mRNA_P-wetherbeei_contig771.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=860bp|location=Sequence derived from alignment at P-wetherbeei_contig771:3972..4831- (Phaeothamnion wetherbeei SAG_119_79)
CCCCCTGCCAACAGCCAACTACCTGCGAATTGCGTTCTTAGCTGCGAGCT
GTTCCCGCAGCTCCTATGAGAGGACGCGCACCCCTCCGCGATTCACATCG
CCAACTTTTGAACGCGATTGACAAAAAGGACACAGCAACGGCACCGCATC
GATCCCATCCTGCTGCACGTGGGCTGTACGCGCTCTCATTCCCGCCTGGA
CCGCTGGGCCTGGAGCTGGAGAGCGTCAACGACGGTGCAGGTTGCCGAGT
TTCCCGCGTCTTGGCGAGCTGCCCCAATCGGGATGTCGTGGCGGTAGGCG
ACGTGGTGGTTTCTTTCGGCGGCGGTAGCGATAGCAGCCACAACACCATG
GAACCGCTGTCCTTCCATCGGGCTCTGCAGAGGCTCCAGGAATCGGCCTC
GCGGTCCAAGACGTTGCTCTTGTGTCGGGACAGTGTCGTTTTCAAAGCAA
CGGCGGCAGCGGACGCTCCAACGAGAGACAAATCCACGCGCCCGCATGGC
GCCCTGACTGTGGGTCAGCAAAACGGCTTCGGAATCGGCAACATCGCGGC
GAAGCCAGGGCGAGGCGATGTCGTCACCGCGATTCTCAGCGGGAGCAAGA
ATTCTGCTCGCGGTCGGGTGTTCGCCCCCTCGCTGTCCCTTTCGCCTTCG
CTACAAGCGGCGCCAGCTGCGCTAGACGATGGAGCATCGGGCAGCACGTC
TGGCCTCAAGTCTGTCGGTGGCAATTACCGCGACAGCAGCGGCCTCGGTG
GCGGAAGCAGCAGCTTGGATAGCGACATCAGCGCCAAGTTTTCGTCGTCA
GCATCGCTGCTGGGGCAGTCTTGGTCCGGGCCGATCTCCTCTGCGCCGAG
CGACCGGTGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig771:3972..4831-

>mRNA_P-wetherbeei_contig771.2.1 ID=mRNA_P-wetherbeei_contig771.2.1|Name=mRNA_P-wetherbeei_contig771.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=795bp|location=Sequence derived from alignment at P-wetherbeei_contig771:3972..4831- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGAGGACGCGCACCCCTCCGCGATTCACATCGCCAACTTTTGAACGC
GATTGACAAAAAGGACACAGCAACGGCACCGCATCGATCCCATCCTGCTG
CACGTGGGCTGTACGCGCTCTCATTCCCGCCTGGACCGCTGGGCCTGGAG
CTGGAGAGCGTCAACGACGGTGCAGGTTGCCGAGTTTCCCGCGTCTTGGC
GAGCTGCCCCAATCGGGATGTCGTGGCGGTAGGCGACGTGGTGGTTTCTT
TCGGCGGCGGTAGCGATAGCAGCCACAACACCATGGAACCGCTGTCCTTC
CATCGGGCTCTGCAGAGGCTCCAGGAATCGGCCTCGCGGTCCAAGACGTT
GCTCTTGTGTCGGGACAGTGTCGTTTTCAAAGCAACGGCGGCAGCGGACG
CTCCAACGAGAGACAAATCCACGCGCCCGCATGGCGCCCTGACTGTGGGT
CAGCAAAACGGCTTCGGAATCGGCAACATCGCGGCGAAGCCAGGGCGAGG
CGATGTCGTCACCGCGATTCTCAGCGGGAGCAAGAATTCTGCTCGCGGTC
GGGTGTTCGCCCCCTCGCTGTCCCTTTCGCCTTCGCTACAAGCGGCGCCA
GCTGCGCTAGACGATGGAGCATCGGGCAGCACGTCTGGCCTCAAGTCTGT
CGGTGGCAATTACCGCGACAGCAGCGGCCTCGGTGGCGGAAGCAGCAGCT
TGGATAGCGACATCAGCGCCAAGTTTTCGTCGTCAGCATCGCTGCTGGGG
CAGTCTTGGTCCGGGCCGATCTCCTCTGCGCCGAGCGACCGGTGG
back to top