mRNA_P-wetherbeei_contig77.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig77.6.1
Unique NamemRNA_P-wetherbeei_contig77.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig77.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig77contigP-wetherbeei_contig77:5049..6129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size467
Hectar predicted targeting categorymitochondrion
Exons3
Cds size465
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186995.1125453-CDS-P-wetherbeei_contig77:5048..52491683186995.1125453-CDS-P-wetherbeei_contig77:5048..5249Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig77 5049..5249 -
1683186995.1263657-CDS-P-wetherbeei_contig77:5591..57701683186995.1263657-CDS-P-wetherbeei_contig77:5591..5770Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig77 5592..5770 -
1683186995.136605-CDS-P-wetherbeei_contig77:6044..61291683186995.136605-CDS-P-wetherbeei_contig77:6044..6129Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig77 6045..6129 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig77.6.1prot_P-wetherbeei_contig77.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig77 5049..6129 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig77.6.1

>prot_P-wetherbeei_contig77.6.1 ID=prot_P-wetherbeei_contig77.6.1|Name=mRNA_P-wetherbeei_contig77.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=155bp
WRRNVISCHYQWKPFNRPSLAIAASLYWGRIGKRRVLVYKRHGVDECSDG
KWLSQRAGRPRPRRPPRSRRSSAREARRETRSPVGLLRVQAGSDSRARGA
SRCRRGRRRRRPQRRRGAGVAAPPCWRHYRRGTRRRAARRPGLPRSGAAG
AAAGA
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mRNA from alignment at P-wetherbeei_contig77:5049..6129-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig77.6.1 ID=mRNA_P-wetherbeei_contig77.6.1|Name=mRNA_P-wetherbeei_contig77.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1081bp|location=Sequence derived from alignment at P-wetherbeei_contig77:5049..6129- (Phaeothamnion wetherbeei SAG_119_79)
TGGAGAAGGAACGTAATTAGCTGTCACTATCAGTGGAAACCTTTCAACCG
CCCATCTCTCGCCATTGCGGCTTCGTTGTATTGGGGTGAGTACGCCATGC
TTGTTGATGTCTTTCGGCGATCGCGTCGCGAGAAGGTAGTACAACAGCGT
GGCGTTATAACTTATGTTTCTTCTTTCGATAAGCTGTTGTTTCTTACTGC
CTTCCTTTCTCTTTCGCAAAGCGTTGGAGGGTGAGAGGATGAAAAGGTTT
CTCGCGTGCCTTCTGCAGGTTGGGGAGACCACGTCAAGGTATTCGCTGCA
TCGTTCTTGACGCTAGGCGCCTATCTTCCTATGTCAACCACACGCTGCGT
CGGTTCCAGGAAGAATCGGAAAGAGAAGGGTTTTGGTTTACAAGCGGCAC
GGCGTCGATGAATGCAGCGACGGCAAGTGGTTATCACAGCGCGCTGGCAG
GCCGCGGCCCCGGAGGCCGCCCCGTTCCCGCCGGTCGTCAGCGCGCGAGG
CGCGGCGCGAGACGCGGAGTCCGGTTGGGCTGCTTCGGGTGAGAACAGAC
TCTTCGATCCATGCCTTTGGTTCCATTAATGTATTTCCATATCTTCCTCC
TCCCTCGGGTTGACGCCTTGCTTCATTCAGTTTGGACAGCACGCCTGGTG
GAATCGCTCTTTGTTTTACTTCATGTCTCTTGCCACGCCTTTTCATTGCT
CTTGCTTCGGCTGTGCTTTGAATTAATGATGCCCTGTTCGCGTTCGCTTT
CCTCCATTCTTGTTTGCCCTCACTAAGCATCGTCTGCCGTCCCGTCCGGT
GCTGGCGCCCGACGCTAATCCCCATCACCACCCTGACCGCAGCATCCCGA
CCGCTTATCTCTCTCCCGCTCCATGCGTAGGTGCAAGCAGGGAGCGACAG
CCGTGCCCGCGGCGCCAGCAGATGCCGCCGCGGCCGGCGCCGTCGCCGGC
CGCAGCGCCGTCGTGGTGCTGGCGTCGCAGCTCCTCCGTGCTGGCGCCAT
TACCGCCGAGGAACACGCCGACGTGCTGCTCGGCGACCGGGTCTACCGCG
CTCAGGAGCGGCTGGCGCTGCAGCAGGAGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig77:5049..6129-

>mRNA_P-wetherbeei_contig77.6.1 ID=mRNA_P-wetherbeei_contig77.6.1|Name=mRNA_P-wetherbeei_contig77.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=465bp|location=Sequence derived from alignment at P-wetherbeei_contig77:5049..6129- (Phaeothamnion wetherbeei SAG_119_79)
TGGAGAAGGAACGTAATTAGCTGTCACTATCAGTGGAAACCTTTCAACCG
CCCATCTCTCGCCATTGCGGCTTCGTTGTATTGGGGAAGAATCGGAAAGA
GAAGGGTTTTGGTTTACAAGCGGCACGGCGTCGATGAATGCAGCGACGGC
AAGTGGTTATCACAGCGCGCTGGCAGGCCGCGGCCCCGGAGGCCGCCCCG
TTCCCGCCGGTCGTCAGCGCGCGAGGCGCGGCGCGAGACGCGGAGTCCGG
TTGGGCTGCTTCGGGTGCAAGCAGGGAGCGACAGCCGTGCCCGCGGCGCC
AGCAGATGCCGCCGCGGCCGGCGCCGTCGCCGGCCGCAGCGCCGTCGTGG
TGCTGGCGTCGCAGCTCCTCCGTGCTGGCGCCATTACCGCCGAGGAACAC
GCCGACGTGCTGCTCGGCGACCGGGTCTACCGCGCTCAGGAGCGGCTGGC
GCTGCAGCAGGAGCG
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