mRNA_P-wetherbeei_contig7698.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7698.2.1
Unique NamemRNA_P-wetherbeei_contig7698.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7698.2.1 vs. uniprot
Match: A0A835Z8C9_9STRA (Stc1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8C9_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.490e-15
Identity = 51/128 (39.84%), Postives = 75/128 (58.59%), Query Frame = 1 
Query:    1 MADTVGGKWAGDLDCCQCRMKRLTAASFSRKQMDKVLAGKLQRSELRCKVCVEAGAQKERADAAARVAAAXXXXXXXXXXXXXSASELSAVFACSACQQELPLSSFSASQARKKD-----GRRCRECT 369
            M D VGG+WAG+ +C  C  KRLTAASFSRKQ+DK      +  +L+CK CV+A A++ER  A A+ AA              S +  +++  C  C+ +LP S+F+ +QA + +     G +CR+CT
Sbjct:   58 MTDAVGGQWAGNYECSCCGKKRLTAASFSRKQLDKRRQN--ESLQLKCKDCVDAAAREERDKAVAKAAAVAAEVPVAAEGAAQSHTGGASLLTCCRCKAQLPHSAFTNTQAHRAETGKGGGGKCRDCT 183
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BLAST of mRNA_P-wetherbeei_contig7698.2.1 vs. uniprot
Match: A0A7S1IT93_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IT93_9EUGL)

HSP 1 Score: 76.3 bits (186), Expect = 5.880e-14
Identity = 58/170 (34.12%), Postives = 89/170 (52.35%), Query Frame = 1 
Query:   22 KWAGDLDCCQCRMKRLTAASFSRKQMDKVLAGKLQRSE--LRCKVCVEAGAQKERADAAARVAAAXXXXXXXXXXXXXSASELSAVFACSACQQELPLSSFSASQARKKDGRRCRECTDKAEKVESEAAAARRREGLGLTNKPPVSLLAGG-VVGRFKAAMEECAAEASF 522
            KWAG+ DC  C+ KRL AA FS+KQ+++    K +  +  ++CK C EA  +++RA AAA  AA              SA E   +  CS C+QELP +S++  Q +KK  RRC  C ++ EK  +++    +++ L    K  +   A G  V   +A+ +  A EA  
Sbjct:   16 KWAGNYDCSGCKRKRLIAAEFSQKQIER----KRENFDYPMKCKKCTEADMEEQRAKAAAAKAA---------QPTDPSAVE---ILVCSGCKQELPSTSYAGKQLKKKAYRRCHACVEQGEKETAQSTEEAKKKKLEDLRKEAIKAEASGDAVASLRASCKAAAMEAEL 169
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BLAST of mRNA_P-wetherbeei_contig7698.2.1 vs. uniprot
Match: R1C857_EMIHU (Stc1 domain-containing protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1C857_EMIHU)

HSP 1 Score: 56.2 bits (134), Expect = 2.500e-6
Identity = 77/211 (36.49%), Postives = 98/211 (46.45%), Query Frame = 1 
Query:    1 MADTVGGK-----WAGDLDCCQCRMKRLTAASFSRKQMDKVLAGKLQRSELRCKVCVEAGAQKERADAAARVAAAXXXXXXXXXXXXXSASELSAVFACSACQQELPLSSFSASQARKKDGRRCRECTDKA----EKVESEAAAARRREGLGLTNKPPVSLLAGGVVGRFKAAMEECAAEASFVTGLRPMRGSRLKSLSGRGRG--RGSGG 600
            M+ T GG      WAGD  C +C  KRLTAA+FS++ +++     +    L+C  CVEA A           A  XXXXXXXXXXXXX          CSAC +  P   F+ +Q +K    RC +C   A        S+A  AR +E      K       G    R  AA +  A E   VTGL+P+    +    GRGRG  RG GG
Sbjct:    1 MSSTGGGADGRSDWAGDFACVECGRKRLTAAAFSKRSIERHRTANV---PLKCTACVEAAA-----------AXXXXXXXXXXXXXXXXXXXXXXEVVCSACCKPRPAGDFTRAQLQKGAKARCGDCVAAAGAAXXXAPSDAWEARYKEAKEAARKAEA---VGTAAARLAAASKVAALEGERVTGLKPV----VLGRGGRGRGSWRGRGG 190
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7698.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835Z8C9_9STRA1.490e-1539.84Stc1 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S1IT93_9EUGL5.880e-1434.12Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
R1C857_EMIHU2.500e-636.49Stc1 domain-containing protein n=3 Tax=Emiliania h... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7698contigP-wetherbeei_contig7698:542..1429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LI98
PFAMsStc1
Model size609
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.92e-19
EggNOG OGs2CIRJ@1|root,2S951@2759|Eukaryota
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_003700.2
Cds size609
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186995.027549-CDS-P-wetherbeei_contig7698:541..7241683186995.027549-CDS-P-wetherbeei_contig7698:541..724Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7698 542..724 -
1683186995.0369182-CDS-P-wetherbeei_contig7698:1003..14291683186995.0369182-CDS-P-wetherbeei_contig7698:1003..1429Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7698 1004..1429 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7698.2.1prot_P-wetherbeei_contig7698.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7698 542..1429 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7698.2.1

>prot_P-wetherbeei_contig7698.2.1 ID=prot_P-wetherbeei_contig7698.2.1|Name=mRNA_P-wetherbeei_contig7698.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=203bp
MADTVGGKWAGDLDCCQCRMKRLTAASFSRKQMDKVLAGKLQRSELRCKV
CVEAGAQKERADAAARVAAAASAVGSGACGNGGSASELSAVFACSACQQE
LPLSSFSASQARKKDGRRCRECTDKAEKVESEAAAARRREGLGLTNKPPV
SLLAGGVVGRFKAAMEECAAEASFVTGLRPMRGSRLKSLSGRGRGRGSGG
RT*
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mRNA from alignment at P-wetherbeei_contig7698:542..1429-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7698.2.1 ID=mRNA_P-wetherbeei_contig7698.2.1|Name=mRNA_P-wetherbeei_contig7698.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=888bp|location=Sequence derived from alignment at P-wetherbeei_contig7698:542..1429- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGACACGGTTGGTGGAAAATGGGCTGGCGACTTGGACTGCTGCCA
ATGCAGAATGAAAAGGCTTACTGCTGCATCGTTCAGTCGGAAGCAAATGG
ACAAAGTTCTGGCAGGGAAGCTGCAACGCAGCGAACTTCGGTGCAAAGTC
TGTGTCGAAGCCGGCGCCCAGAAAGAGCGGGCTGATGCTGCGGCTCGTGT
GGCTGCCGCTGCGTCGGCGGTTGGCTCAGGCGCGTGTGGGAATGGCGGGA
GCGCCTCTGAGCTGTCCGCCGTTTTCGCATGCAGCGCCTGCCAACAGGAG
CTGCCGCTTTCTTCCTTCTCGGCGAGCCAGGCGAGAAAGAAAGACGGCCG
GCGGTGCCGGGAATGCACCGACAAAGCAGAAAAGGTAGAGAGCGAGGCAG
CGGCGGCCAGGCGACGCGAGGGACTGGTCGCGGGCGGAGCACCCGGAGAA
GGTGCCACAGGTGGGGGCACCTTTTTTTGGTGTGCCTTTTCCTCTGTTGC
TAGTTTGCATTCCATGTGTCTGTGAGGCGGGATGCCATCGTTTTTACCAT
GTATTTTAAGCGGACAGATTTTTTGGCAATTAAATTGCTCTTTACGTGCT
CGTACAAAAGGGTGGCCTGGTGTGAGGGCCGGTGGTTCGCTCTTTCATTT
CGTAACATCTGTCCTGATTCAAAGGTCTGGAACCGTTCCATACGTCGAAG
ACAAGGGATTAACCAACAAACCGCCGGTTTCCCTACTTGCAGGCGGTGTC
GTTGGACGGTTTAAAGCCGCGATGGAGGAGTGTGCTGCCGAAGCCAGCTT
TGTCACCGGGCTCCGCCCGATGCGAGGCTCCAGGCTCAAAAGCCTTAGTG
GGCGAGGGCGGGGCCGCGGCTCCGGAGGAAGGACTTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7698:542..1429-

>mRNA_P-wetherbeei_contig7698.2.1 ID=mRNA_P-wetherbeei_contig7698.2.1|Name=mRNA_P-wetherbeei_contig7698.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=609bp|location=Sequence derived from alignment at P-wetherbeei_contig7698:542..1429- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGACACGGTTGGTGGAAAATGGGCTGGCGACTTGGACTGCTGCCA
ATGCAGAATGAAAAGGCTTACTGCTGCATCGTTCAGTCGGAAGCAAATGG
ACAAAGTTCTGGCAGGGAAGCTGCAACGCAGCGAACTTCGGTGCAAAGTC
TGTGTCGAAGCCGGCGCCCAGAAAGAGCGGGCTGATGCTGCGGCTCGTGT
GGCTGCCGCTGCGTCGGCGGTTGGCTCAGGCGCGTGTGGGAATGGCGGGA
GCGCCTCTGAGCTGTCCGCCGTTTTCGCATGCAGCGCCTGCCAACAGGAG
CTGCCGCTTTCTTCCTTCTCGGCGAGCCAGGCGAGAAAGAAAGACGGCCG
GCGGTGCCGGGAATGCACCGACAAAGCAGAAAAGGTAGAGAGCGAGGCAG
CGGCGGCCAGGCGACGCGAGGGACTGGGATTAACCAACAAACCGCCGGTT
TCCCTACTTGCAGGCGGTGTCGTTGGACGGTTTAAAGCCGCGATGGAGGA
GTGTGCTGCCGAAGCCAGCTTTGTCACCGGGCTCCGCCCGATGCGAGGCT
CCAGGCTCAAAAGCCTTAGTGGGCGAGGGCGGGGCCGCGGCTCCGGAGGA
AGGACTTAA
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