mRNA_P-wetherbeei_contig7676.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7676.1.1
Unique NamemRNA_P-wetherbeei_contig7676.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7676.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7676contigP-wetherbeei_contig7676:817..3015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1550
Hectar predicted targeting categoryother localisation
Exons3
Cds size1548
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186994.272347-CDS-P-wetherbeei_contig7676:816..10241683186994.272347-CDS-P-wetherbeei_contig7676:816..1024Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7676 817..1024 +
1683186994.2833824-CDS-P-wetherbeei_contig7676:1282..13591683186994.2833824-CDS-P-wetherbeei_contig7676:1282..1359Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7676 1283..1359 +
1683186994.2915432-CDS-P-wetherbeei_contig7676:1750..30131683186994.2915432-CDS-P-wetherbeei_contig7676:1750..3013Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7676 1751..3013 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7676.1.1prot_P-wetherbeei_contig7676.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7676 817..3013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7676.1.1

>prot_P-wetherbeei_contig7676.1.1 ID=prot_P-wetherbeei_contig7676.1.1|Name=mRNA_P-wetherbeei_contig7676.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=516bp
GGAGSGSGAGSRCGSNEFAEVAAAFSGGGGAGGEPMAEDDVNVVRRELAQ
ALSATFERPASPGGFGATFGTKVPGAFRRQDLAASTQELGRVLEQRKAGR
PQAIERQMGRVRDAVEEAMQRMLGDGGDDPAVAAIAAGGSGVFGVFGGAN
GIVGGASGRLRGDRGDGAGEGIFGERSGGNLHWEPEGKEEKEEDEEIVLQ
QPRGAQRQQPVPQHGLRRVPEGGKARAAAGGRAKALSRGGHNPWEDDDEE
SEGGGGGGGRGNSRSGTGRDGLSGRGRNAGEPGGVRRGSSGSRGGDDGSG
VLSESAGAAVAGEGLRSSGESDGGSEDGSGLHGGGSPGGDGGEMINRATG
IRKNGRGPGGNSGLEDLELRLPRRRSGIDSTSLALPGSQSGDDASCSRDS
GGGGRGSSGKAASAGMAVSSGSDDGRRDSASGGGSGVAGDGGASPAFPRV
RTGSLLASVPATLYDALSDEEEDKAVAASTERTAGGGTAQSDGVVVIVGG
GGGRGGDGSGGGRGGG
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mRNA from alignment at P-wetherbeei_contig7676:817..3015+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7676.1.1 ID=mRNA_P-wetherbeei_contig7676.1.1|Name=mRNA_P-wetherbeei_contig7676.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2199bp|location=Sequence derived from alignment at P-wetherbeei_contig7676:817..3015+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCGCCGGCAGCGGCAGCGGCGCCGGCAGCCGGTGCGGCAGCAACGA
GTTCGCAGAGGTGGCCGCTGCCTTCAGTGGGGGCGGTGGCGCCGGCGGCG
AGCCGATGGCCGAGGACGATGTGAATGTGGTGCGGCGGGAGCTAGCGCAG
GCGCTTTCGGCGACGTTCGAGAGGCCCGCCTCGCCCGGCGGCTTCGGGGC
CACTTTTGGTGAGGTTTTCAGGCCGCTCGCTGTTTCTGATTCTTGATCGA
ATTGTCTGGGTCCGGCCAGGAGCTGGGATTTCGTCCCGCCTACGCAGAGC
GTTCGTTACGTAGTCGGAAGGGCTCTGCTCGCTCTTCTCTATACATCTCC
GATCGATGGTTTGCGTTTGATGTTTGCGTCCTTATAGACGTTGCGTCAAA
GCTCCAGAGGCTTCTGATGGCCACTGCCGCCACCGCCGCCGCGTTTGCCG
CTCGTCGTCTCGGCAGGCACGAAAGTTCCTGGCGCGTTCCGTCGGCAAGA
CCTGGCTGCATCCACCCAAGAGCTTGGACGGGTCCTGGAACAGGTGAGCA
AGGCTGCTGTCAGCTTATCTGATTACTGTTACCTCCCAACTCTGTGGGAA
CCAGGGTCATTCCGCTTCTCTTGTGACAGAGCGGGAACAGAATGGCAAGC
GCGCGGGAAGGAAGATGTTTCCTTTGGGCGTCTTAATCGTTTTCTATGCT
GCTTTGCCACCATGAGCCGGTAGGTCGTATTCGGTCTGTGTATCCTTTTT
GCCTCGCGGCCGGAGCGCAACGGACGGACGGCTGCAGCAGACGGCCGGCT
GACTGTGTCGAGCTTGCTGGCGTGCAGCGCGGCTTCATGTCTCCACGAAT
CGACCGTCAGCCACACAAATCCCTCCCCCCTCCCCCGCCCTGCCCACCGC
CCCCCTCCCTTTCTCCGCCCGCTCTCCTGCGCAGCGCAAAGCCGGCCGCC
CACAGGCCATCGAGCGCCAGATGGGCCGGGTTCGCGACGCCGTCGAGGAA
GCCATGCAGCGGATGCTCGGTGACGGCGGCGATGACCCAGCCGTCGCGGC
CATCGCCGCCGGAGGCAGCGGCGTCTTTGGCGTCTTTGGCGGCGCCAACG
GCATTGTGGGGGGTGCCAGCGGCCGCCTCAGAGGCGACAGGGGCGACGGC
GCCGGTGAGGGCATCTTTGGTGAAAGGAGCGGCGGCAATCTCCACTGGGA
GCCGGAAGGGAAGGAGGAGAAGGAAGAGGACGAGGAAATTGTCCTCCAGC
AGCCGCGGGGAGCGCAGCGTCAGCAGCCGGTCCCCCAACATGGGCTCCGG
CGGGTTCCGGAAGGCGGCAAGGCGCGAGCTGCTGCTGGCGGGCGGGCAAA
AGCGTTGAGCCGCGGCGGTCACAATCCCTGGGAGGACGATGATGAAGAGA
GCGAAGGTGGCGGCGGCGGCGGTGGCCGCGGAAACAGCCGCAGCGGGACC
GGCAGGGACGGCCTATCCGGCAGGGGCAGGAACGCCGGAGAGCCGGGAGG
GGTCCGACGCGGCAGCAGCGGCAGTCGCGGCGGCGACGACGGCAGCGGTG
TGCTTTCTGAAAGCGCCGGCGCCGCCGTTGCCGGGGAAGGCCTTCGCAGT
TCCGGGGAGAGCGACGGCGGCTCCGAAGACGGCAGCGGCCTACACGGCGG
CGGCAGCCCCGGTGGCGATGGCGGCGAGATGATAAACCGTGCAACAGGAA
TTCGGAAAAATGGGCGGGGCCCTGGTGGCAACTCTGGACTGGAAGACCTC
GAGCTGCGGCTGCCTAGGAGGCGCAGTGGCATCGACAGCACAAGCCTAGC
GCTGCCAGGGAGTCAAAGCGGCGATGACGCCAGTTGCAGCCGCGACAGCG
GCGGCGGCGGCAGAGGCAGCAGCGGCAAGGCCGCTTCCGCGGGCATGGCT
GTCAGCAGTGGCTCCGACGATGGCCGCCGTGACAGCGCTTCCGGCGGCGG
CAGCGGCGTCGCCGGCGACGGCGGCGCTTCGCCTGCCTTTCCACGGGTCC
GCACGGGCAGCCTCCTTGCTTCGGTTCCGGCGACGCTTTATGACGCATTG
TCGGACGAAGAGGAAGACAAAGCTGTGGCGGCGTCGACCGAACGGACAGC
CGGTGGCGGGACCGCACAGAGCGACGGCGTCGTTGTCATCGTTGGCGGTG
GCGGCGGCCGCGGCGGCGACGGCAGCGGCGGCGGCCGCGGCGGAGGCGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7676:817..3015+

>mRNA_P-wetherbeei_contig7676.1.1 ID=mRNA_P-wetherbeei_contig7676.1.1|Name=mRNA_P-wetherbeei_contig7676.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1548bp|location=Sequence derived from alignment at P-wetherbeei_contig7676:817..3015+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCGCCGGCAGCGGCAGCGGCGCCGGCAGCCGGTGCGGCAGCAACGA
GTTCGCAGAGGTGGCCGCTGCCTTCAGTGGGGGCGGTGGCGCCGGCGGCG
AGCCGATGGCCGAGGACGATGTGAATGTGGTGCGGCGGGAGCTAGCGCAG
GCGCTTTCGGCGACGTTCGAGAGGCCCGCCTCGCCCGGCGGCTTCGGGGC
CACTTTTGGCACGAAAGTTCCTGGCGCGTTCCGTCGGCAAGACCTGGCTG
CATCCACCCAAGAGCTTGGACGGGTCCTGGAACAGCGCAAAGCCGGCCGC
CCACAGGCCATCGAGCGCCAGATGGGCCGGGTTCGCGACGCCGTCGAGGA
AGCCATGCAGCGGATGCTCGGTGACGGCGGCGATGACCCAGCCGTCGCGG
CCATCGCCGCCGGAGGCAGCGGCGTCTTTGGCGTCTTTGGCGGCGCCAAC
GGCATTGTGGGGGGTGCCAGCGGCCGCCTCAGAGGCGACAGGGGCGACGG
CGCCGGTGAGGGCATCTTTGGTGAAAGGAGCGGCGGCAATCTCCACTGGG
AGCCGGAAGGGAAGGAGGAGAAGGAAGAGGACGAGGAAATTGTCCTCCAG
CAGCCGCGGGGAGCGCAGCGTCAGCAGCCGGTCCCCCAACATGGGCTCCG
GCGGGTTCCGGAAGGCGGCAAGGCGCGAGCTGCTGCTGGCGGGCGGGCAA
AAGCGTTGAGCCGCGGCGGTCACAATCCCTGGGAGGACGATGATGAAGAG
AGCGAAGGTGGCGGCGGCGGCGGTGGCCGCGGAAACAGCCGCAGCGGGAC
CGGCAGGGACGGCCTATCCGGCAGGGGCAGGAACGCCGGAGAGCCGGGAG
GGGTCCGACGCGGCAGCAGCGGCAGTCGCGGCGGCGACGACGGCAGCGGT
GTGCTTTCTGAAAGCGCCGGCGCCGCCGTTGCCGGGGAAGGCCTTCGCAG
TTCCGGGGAGAGCGACGGCGGCTCCGAAGACGGCAGCGGCCTACACGGCG
GCGGCAGCCCCGGTGGCGATGGCGGCGAGATGATAAACCGTGCAACAGGA
ATTCGGAAAAATGGGCGGGGCCCTGGTGGCAACTCTGGACTGGAAGACCT
CGAGCTGCGGCTGCCTAGGAGGCGCAGTGGCATCGACAGCACAAGCCTAG
CGCTGCCAGGGAGTCAAAGCGGCGATGACGCCAGTTGCAGCCGCGACAGC
GGCGGCGGCGGCAGAGGCAGCAGCGGCAAGGCCGCTTCCGCGGGCATGGC
TGTCAGCAGTGGCTCCGACGATGGCCGCCGTGACAGCGCTTCCGGCGGCG
GCAGCGGCGTCGCCGGCGACGGCGGCGCTTCGCCTGCCTTTCCACGGGTC
CGCACGGGCAGCCTCCTTGCTTCGGTTCCGGCGACGCTTTATGACGCATT
GTCGGACGAAGAGGAAGACAAAGCTGTGGCGGCGTCGACCGAACGGACAG
CCGGTGGCGGGACCGCACAGAGCGACGGCGTCGTTGTCATCGTTGGCGGT
GGCGGCGGCCGCGGCGGCGACGGCAGCGGCGGCGGCCGCGGCGGAGGC
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