mRNA_P-wetherbeei_contig767.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig767.2.1
Unique NamemRNA_P-wetherbeei_contig767.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig767.2.1 vs. uniprot
Match: A0A6S9GZX5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GZX5_HETAK)

HSP 1 Score: 77.8 bits (190), Expect = 4.420e-13
Identity = 41/89 (46.07%), Postives = 53/89 (59.55%), Query Frame = 1 
Query:   31 DRSTRQRRRLCEEGECGGQVLDEAQNCINKCLSPICFLEVYAEELLEDGEIDNERARRFNNCLRA-------KRVGSSGVPDPADGGAS 276
            D++ R ++  CE   CG  ++DEAQNCINKC+S  C+ EVYA E LEDGE+D  R +RF  C RA       K++ S     P D G S
Sbjct:   45 DKNFRIKKGDCERVACGHMIVDEAQNCINKCISAECYEEVYAHEPLEDGEVDASRYKRFQACYRAANKYTSKKKMQSKEGQKPVDDGVS 133
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BLAST of mRNA_P-wetherbeei_contig767.2.1 vs. uniprot
Match: A0A8J2SQ16_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SQ16_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.650e-12
Identity = 34/68 (50.00%), Postives = 43/68 (63.24%), Query Frame = 1 
Query:   31 DRSTRQRRRLCEEGECGGQVLDEAQNCINKCLSPICFLEVYAEELLEDGEIDNERARRFNNCLRAKRV 234
            DR+ R RRR CE   C G       NC+N C+S  CF E+YAEE LEDGE+D++R+R F +C R   V
Sbjct:   55 DRAFRARRRECETQTCAGMQPGTNMNCVNACISQSCFDEIYAEEPLEDGEVDSKRSRLFQSCARKSLV 122
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BLAST of mRNA_P-wetherbeei_contig767.2.1 vs. uniprot
Match: A0A0G4FSH9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FSH9_VITBC)

HSP 1 Score: 70.5 bits (171), Expect = 4.150e-11
Identity = 30/66 (45.45%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:   25 QLDRSTRQRRRLCEEGECGGQVLDEAQNCINKCLSPICFLEVYAEELLEDGEIDNERARRFNNCLR 222
            Q  ++ R RR+ C   ECG   ++E   C++KC+SPIC+ EVY  + LE GEID  R   FN CL+
Sbjct:   13 QTSKAWRTRRQSCSRNECGHLPIEENDGCVDKCVSPICYNEVYVSDPLERGEIDRRRRNEFNGCLK 78
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BLAST of mRNA_P-wetherbeei_contig767.2.1 vs. uniprot
Match: A0A1V9ZQ93_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZQ93_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 3.290e-10
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:   28 LDRSTRQRRRLCEEGECGGQVLDEA--QNCINKCLSPICFLEVYAEELLEDGEIDNERARRFNNCLR 222
            +DR  + +++ C E +C   +LD+    NC+N CLSP C+  VYAEE LEDGE+D+ R+ RF +CLR
Sbjct:   28 VDRKWKMQKKYCTERDCS--LLDKYTNMNCVNMCLSPTCYERVYAEEPLEDGEVDDYRSYRFVSCLR 92
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BLAST of mRNA_P-wetherbeei_contig767.2.1 vs. uniprot
Match: A0A7S3P5K9_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P5K9_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.570e-9
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:   61 CEEGECGGQVLDEAQNCINKCLSPICFLEVYAEELLEDGEIDNERARRFNNCL 219
            CE   CG  +++E  NC++ CLSP CF  VY  E LEDGE+D ER ++F++C 
Sbjct:   60 CETQVCGACIMEENLNCVSMCLSPACFETVYGNEPLEDGELDFERTKQFDDCF 112
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BLAST of mRNA_P-wetherbeei_contig767.2.1 vs. uniprot
Match: A0A5A8CZQ6_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CZQ6_CAFRO)

HSP 1 Score: 60.5 bits (145), Expect = 1.700e-7
Identity = 26/61 (42.62%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:   49 RRRLCEEGECGGQVLDEAQNCINKCLSPICFLEVYAEELLEDGEIDNERARRFNNCLRAKR 231
            RRR C    CG   + E  NC+N+C+SP C+ EVY  E LE GE+D  R ++F++C   ++
Sbjct:   54 RRRNCRSQVCGSIPVHEDDNCVNECVSPRCYQEVYGAEPLEPGEVDLVRWQQFSSCYSLEK 114
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BLAST of mRNA_P-wetherbeei_contig767.2.1 vs. uniprot
Match: A0A0G4GQ10_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GQ10_9ALVE)

HSP 1 Score: 59.7 bits (143), Expect = 2.080e-7
Identity = 25/60 (41.67%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:   43 RQRRRLCEEGECGGQVLDEAQNCINKCLSPICFLEVYAEELLEDGEIDNERARRFNNCLR 222
            R RR  C   EC     +E  +C++KCLSP C+ +++AE  LE GE+D +R   F NC++
Sbjct:   38 RARRNKCVMNECSDIPEEENDDCVDKCLSPQCYQDIFAENPLEPGEVDRKRRNDFMNCVK 97
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BLAST of mRNA_P-wetherbeei_contig767.2.1 vs. uniprot
Match: A0A7S0RAH5_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RAH5_9CHLO)

HSP 1 Score: 55.5 bits (132), Expect = 7.680e-6
Identity = 21/52 (40.38%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:   67 EGECGGQVLDEAQNCINKCLSPICFLEVYAEELLEDGEIDNERARRFNNCLR 222
            +  CG  +  + +NCI KC+S  C+ +VY ++ LEDGE+DN R + F +C++
Sbjct:   61 DATCGTAI--QKENCILKCVSDACYADVYGDDPLEDGEVDNVRGKSFRSCVK 110
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BLAST of mRNA_P-wetherbeei_contig767.2.1 vs. uniprot
Match: A0A7J6LDE3_PEROL (Uncharacterized protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6LDE3_PEROL)

HSP 1 Score: 52.8 bits (125), Expect = 2.700e-5
Identity = 23/46 (50.00%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:   79 GGQVLDEAQNCINKCLSPICFLEVYAEELLEDGEIDNERARRFNNC 216
            G + LD  ++CI++C+SP C+ EVY    LE GEIDNER   F  C
Sbjct:   41 GLRQLDLTESCIDECMSPACYSEVYGASPLEPGEIDNERKLAFIRC 86
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BLAST of mRNA_P-wetherbeei_contig767.2.1 vs. uniprot
Match: A0A7S3FNZ8_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3FNZ8_9CHLO)

HSP 1 Score: 53.1 bits (126), Expect = 9.290e-5
Identity = 20/40 (50.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:  103 QNCINKCLSPICFLEVYAEELLEDGEIDNERARRFNNCLR 222
            +NC+ +C+SP C+ EVYA++ LE+GE+D  R R F  C+R
Sbjct:  112 ENCVLECVSPECYAEVYAQDPLEEGELDTTRGRLFRVCVR 151
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig767.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6S9GZX5_HETAK4.420e-1346.07Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8J2SQ16_9STRA2.650e-1250.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A0G4FSH9_VITBC4.150e-1145.45Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A1V9ZQ93_9STRA3.290e-1047.76Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A7S3P5K9_9STRA1.570e-949.06Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A5A8CZQ6_CAFRO1.700e-742.62Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A0G4GQ10_9ALVE2.080e-741.67Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A7S0RAH5_9CHLO7.680e-640.38Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A7J6LDE3_PEROL2.700e-550.00Uncharacterized protein n=1 Tax=Perkinsus olseni T... [more]
A0A7S3FNZ8_9CHLO9.290e-550.00Hypothetical protein n=1 Tax=Chloropicon roscoffen... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig767contigP-wetherbeei_contig767:2533..3952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog55529.EKX43220
PFAMsDUF4787
Model size1202
Max annot lvl2759|Eukaryota
KEGG koko:K03686
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.95e-13
EggNOG OGs2BRQZ@1|root,2S1X1@2759|Eukaryota
DescriptionDomain of unknown function (DUF4787)
Cds size393
COG categoryS
BRITEko00000,ko03029,ko03110
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186994.0384495-UTR-P-wetherbeei_contig767:2532..33411683186994.0384495-UTR-P-wetherbeei_contig767:2532..3341Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig767 2533..3341 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186994.0479608-CDS-P-wetherbeei_contig767:3341..35691683186994.0479608-CDS-P-wetherbeei_contig767:3341..3569Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig767 3342..3569 -
1683186994.0588584-CDS-P-wetherbeei_contig767:3787..39521683186994.0588584-CDS-P-wetherbeei_contig767:3787..3952Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig767 3788..3952 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig767.2.1prot_P-wetherbeei_contig767.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig767 3342..3952 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig767.2.1

>prot_P-wetherbeei_contig767.2.1 ID=prot_P-wetherbeei_contig767.2.1|Name=mRNA_P-wetherbeei_contig767.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=131bp
MQSIRLSFQLDRSTRQRRRLCEEGECGGQVLDEAQNCINKCLSPICFLEV
YAEELLEDGEIDNERARRFNNCLRAKRVGSSGVPDPADGGASSLAMEGAA
AAAAAQADEDKAAEDGPADDGGSDTYAYDA*
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mRNA from alignment at P-wetherbeei_contig767:2533..3952-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig767.2.1 ID=mRNA_P-wetherbeei_contig767.2.1|Name=mRNA_P-wetherbeei_contig767.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1420bp|location=Sequence derived from alignment at P-wetherbeei_contig767:2533..3952- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAATCGATCCGTTTATCCTTCCAGCTGGACAGGTCCACTCGGCAAAG
AAGGCGCCTCTGTGAGGAAGGAGAATGTGGAGGACAGGTGTTGGACGAGG
CACAAAATTGCATCAACAAATGCCTCTCTCCCATTTGTTTTCTAGAAGTG
TACGCCGAAGAACTGGTAAGAAACCTGTCTTGCAAGACTTTTCACCAGCG
TTTGCATCCTTGAGCACTCTGATAGACATCGACGGCTCGTGGTGGACCTA
CTCGCGAGGACAGTGGTGCTGGCCCGCGACAGCTTGATGAATGTGCTGGT
TCAAGACTTTCCTCAGCTATTTTTTTGCTTTCTTGAATTGGCTGACCTTT
TTTACTGCGTTTGACTGTCTTTCATTGCCGCAGCTGGAGGACGGCGAGAT
CGATAACGAGCGTGCGAGACGCTTCAACAACTGCCTGCGCGCAAAGCGCG
TCGGTTCGAGCGGTGTTCCAGACCCTGCGGACGGCGGAGCCAGCAGCTTG
GCGATGGAGGGGGCGGCGGCTGCAGCGGCGGCGCAAGCAGATGAGGACAA
GGCCGCTGAGGACGGACCGGCGGATGACGGCGGAAGTGACACCTACGCCT
ACGATGCTTAAATGGGGGTAGCAGAGGGGTGCAGCCAGCGAGTGGGCGGC
TGATGTCGCATATGGTTACACCGGTTGAGAGAGTTGGCCTCCCGGGGAAC
TTGGCGCAGTGCGGTGCGGAAGACACAAGAGCGGAGCCCGCACAATGAAC
GGGGAGGTATTGCAGAGAGGAGCCATCGGCATGTCAATTGTGGAAGAGGG
AAAGCTAGAAGAAAGCGTGGCCGGAGGGTGATTTTTGAGCTGCTCGAAAT
CCTTTTGAATCTGAGGAGGGCAGGCTTCGGGGGGCTCCTGGGAAGACACA
TTGTGCATTGCATCCCAGACCGCTATTTTGCTACCCTTTGCGCTTTCCTG
CAAGCCTCTGTAGGGTTTAAGGTTTTGCGGCGCGGAAAAGATTCGTTTTC
GTGCGTGCACGTGGAAGCCTCCGATAGAGGGAAGAACGGGACTGAACGGA
GGTAAATTTCGGCTTCGAACTTGTTGAGTACCGTGCAGGTGAGGCGGAGT
GAGAAAGAAACCTTGTGGAGCTCGAGATCCTCCCGTCCACACGTCGAAGG
TCAACCCTGCCCAATTCTCGCATGCGCGTGCTCTATCCGCGCCGTTCTTG
AGCGAAAATGCTGTCAAATGTCAATCTAGCACCTTGTGGCATTGAAGCAG
CGCCAGTCGAAGCCGTGAACATTGGTTGGTCTCCATGAGCTAATGTCATG
TTCTTGGAAAGGCTCAAACCTCTGGATTGGTGAAGTTGTGGCGATGCCGG
TTTAGAATTTCTCTTTCCCACAAGCCAAGCATCTTGCAATGTATCTCCAT
TTTGCCAACCGCTCTCTTTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig767:2533..3952-

>mRNA_P-wetherbeei_contig767.2.1 ID=mRNA_P-wetherbeei_contig767.2.1|Name=mRNA_P-wetherbeei_contig767.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=393bp|location=Sequence derived from alignment at P-wetherbeei_contig767:2533..3952- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAATCGATCCGTTTATCCTTCCAGCTGGACAGGTCCACTCGGCAAAG
AAGGCGCCTCTGTGAGGAAGGAGAATGTGGAGGACAGGTGTTGGACGAGG
CACAAAATTGCATCAACAAATGCCTCTCTCCCATTTGTTTTCTAGAAGTG
TACGCCGAAGAACTGCTGGAGGACGGCGAGATCGATAACGAGCGTGCGAG
ACGCTTCAACAACTGCCTGCGCGCAAAGCGCGTCGGTTCGAGCGGTGTTC
CAGACCCTGCGGACGGCGGAGCCAGCAGCTTGGCGATGGAGGGGGCGGCG
GCTGCAGCGGCGGCGCAAGCAGATGAGGACAAGGCCGCTGAGGACGGACC
GGCGGATGACGGCGGAAGTGACACCTACGCCTACGATGCTTAA
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