mRNA_P-wetherbeei_contig7659.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7659.1.1
Unique NamemRNA_P-wetherbeei_contig7659.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7659.1.1 vs. uniprot
Match: D7G501_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G501_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 2.160e-16
Identity = 97/355 (27.32%), Postives = 142/355 (40.00%), Query Frame = 1 
Query:  511 LNGGSDPIVVMASHLLDRAGRGGASDGLCRSGAGXXXXXXXXXXXXXXXXXXXXXXXX---------RAAAGGVMLRLRVYNATNARLPGLRLELTLGGGAEMMAPRVGQWGRAVLDVRETLLPGREISWDVRLATRQHLPDLTMNALVSFPHPEPEADLEGDGEPTVGDAAVGGXXXXXXXXXXXXXXXXXXATAGASKR-----GGMDSTNALDGCXXXXXSRGGAVVAVGCYTIPAEAFLCPPRAGAPAWPAFLALWGALPCRFCLGLRAAPHLAAFVPTAAD----AYALLSAFEL---------------GARDPRAAGRVWPPSLPGQRLLCAAWLFESWQGATVAVVL 1476
            LNGGSDP+VV ASH++   G  G   G C +  G                                 + A+  V LR+RV+NATN RL G  + L+ G G E +   +G  GR    V+E L+P    + +V +     L D+ ++  V FP  EPE++ E +G      A + G                  A +G  +      GG   T  +DG      +    ++  G Y +PAEAFL PP   A  W  F  +W  L     + + +A HL   +  AA     A +L +A  +               G  D R+A  V  P       + +AW+F++W G  V   L
Sbjct: 1013 LNGGSDPVVVTASHIVYH-GDSGTGGGACGATGGGGRALGPTTLAALAFAGVDGDAASPGTIPGLVGKVASRAVTLRIRVFNATNTRLHGFSIRLSFGQGGEAVG--MGGGGRVESAVQEVLMPSAAHTLEVPVTPLDVLTDVIVHVSVVFPDTEPESEFESEGT-----AELLGVESTEKGRGGDSGGGGSNALSGFGQNQPSFDGGAGDTG-VDGGGSGSVT---VILQAGSYRVPAEAFLGPPERAAATWVGFQNVWCGLAYVTAIPVESARHLPRAITAAAGHEHAAMSLRTASGVRLAMMPVSSRGGGGRGCDDARSAAAVECPVGNTDYAVSSAWVFQAWDGTPVLCAL 1355
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7659.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G501_ECTSI2.160e-1627.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7659contigP-wetherbeei_contig7659:2..2008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2007
Hectar predicted targeting categorymitochondrion
Exons1
Cds size1644
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186993.6168928-UTR-P-wetherbeei_contig7659:1..1301683186993.6168928-UTR-P-wetherbeei_contig7659:1..130Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7659 2..130 -
1683186993.6334147-UTR-P-wetherbeei_contig7659:1774..20081683186993.6334147-UTR-P-wetherbeei_contig7659:1774..2008Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7659 1775..2008 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186993.6253946-CDS-P-wetherbeei_contig7659:130..17741683186993.6253946-CDS-P-wetherbeei_contig7659:130..1774Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7659 131..1774 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7659.1.1prot_P-wetherbeei_contig7659.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7659 131..1774 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7659.1.1

>prot_P-wetherbeei_contig7659.1.1 ID=prot_P-wetherbeei_contig7659.1.1|Name=mRNA_P-wetherbeei_contig7659.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=548bp
MTAALRRLFLSDLVAATPRSGVVPVRPLRTTSGRFAYGADALATVNGRLY
RHFCSSSVGCGGIVGSDRRTQSPLTALEALTTPPADAARFRALNGGSDPI
VVMASHLLDRAGRGGASDGLCRSGAGGGGGSGGIGGGGSGGSGGSLGSTG
RAAAGGVMLRLRVYNATNARLPGLRLELTLGGGAEMMAPRVGQWGRAVLD
VRETLLPGREISWDVRLATRQHLPDLTMNALVSFPHPEPEADLEGDGEPT
VGDAAVGGGGGGAGGVGAGGGGGGLGATAGASKRGGMDSTNALDGCDGCS
GSRGGAVVAVGCYTIPAEAFLCPPRAGAPAWPAFLALWGALPCRFCLGLR
AAPHLAAFVPTAADAYALLSAFELGARDPRAAGRVWPPSLPGQRLLCAAW
LFESWQGATVAVVLFAARVDGPSSNGGLSGFGGGGVGGGLRGAAMVPGGG
GGTWAGRFEVRSDAARCLEGARDLSARLMTFVTNNLFEEMSTADGGSGGR
DPFDAVGAHASPAARGSAGALEAWRALKGLRPPGGIREAPATPEIFA*
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mRNA from alignment at P-wetherbeei_contig7659:2..2008-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7659.1.1 ID=mRNA_P-wetherbeei_contig7659.1.1|Name=mRNA_P-wetherbeei_contig7659.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2007bp|location=Sequence derived from alignment at P-wetherbeei_contig7659:2..2008- (Phaeothamnion wetherbeei SAG_119_79)
CCGACCGTAGAAACGGTGGGGCGCGCCGTCAAGGCCGTGGAACTGCTCGT
TCTGCGGCCACTGGCGGCGTCCACGACGGCGGCATCGGCAGTGGCTGCGG
CGGCCGCCGCAGCGGCGCGAGCGTCGGTGCGGCTGACGCCCAAGGGCGGC
GCACTGCTGGACTTGTGGACAGCGGCGGACTCTTCGCAGTCGGAGTCGTC
CAAGTCGAAGCGGCAGCAGCGGCGGCGTGCGGGCATGACGGCGGCGCTGC
GGCGGCTCTTCCTCTCGGACCTCGTGGCGGCGACGCCCCGCAGCGGCGTT
GTGCCCGTCCGGCCGCTGCGGACCACCTCTGGCCGTTTTGCGTACGGCGC
CGACGCGCTGGCGACCGTTAATGGGCGGCTCTATCGCCACTTCTGCAGTT
CGAGCGTTGGCTGCGGTGGCATTGTCGGCAGCGACCGGCGCACGCAGTCG
CCGCTGACCGCGCTGGAGGCGCTGACAACTCCGCCGGCCGATGCTGCGCG
CTTTCGCGCGCTCAACGGTGGCAGCGATCCAATTGTGGTCATGGCCAGTC
ACCTGCTGGACCGAGCGGGGAGGGGCGGTGCCTCTGACGGCCTCTGCCGC
AGCGGTGCCGGTGGCGGCGGCGGCAGCGGCGGAATCGGTGGCGGAGGCAG
TGGTGGCAGCGGCGGCAGCCTAGGAAGCACAGGAAGGGCGGCGGCCGGTG
GGGTGATGCTGCGGCTGCGCGTGTACAATGCCACCAATGCGCGGCTGCCG
GGCCTCCGGTTGGAGCTGACGCTTGGCGGCGGCGCCGAGATGATGGCGCC
GCGGGTCGGGCAGTGGGGCCGCGCCGTGCTCGATGTGCGAGAAACGCTCC
TGCCGGGCCGGGAAATTTCCTGGGACGTTCGACTGGCGACACGGCAGCAC
CTGCCGGACCTGACGATGAACGCGCTCGTCAGCTTCCCGCACCCGGAGCC
GGAAGCCGACCTGGAAGGGGATGGGGAGCCGACGGTCGGGGATGCGGCGG
TGGGCGGCGGCGGCGGCGGCGCGGGCGGCGTCGGCGCGGGGGGTGGCGGC
GGCGGGCTGGGCGCGACGGCGGGCGCGTCCAAGCGGGGTGGCATGGATAG
CACCAACGCCCTCGATGGCTGCGACGGCTGCTCGGGCAGCCGCGGCGGGG
CGGTCGTCGCCGTCGGCTGCTATACCATCCCGGCCGAGGCGTTCCTGTGC
CCGCCTCGCGCTGGGGCGCCCGCCTGGCCCGCCTTTTTGGCCCTCTGGGG
CGCGCTGCCGTGCCGCTTCTGCCTGGGCCTTCGGGCGGCACCGCATCTGG
CGGCGTTTGTGCCGACCGCCGCCGACGCCTACGCGCTTCTGTCGGCGTTC
GAGCTCGGCGCGAGGGACCCGCGGGCTGCGGGGCGGGTCTGGCCACCGTC
GCTGCCGGGGCAGCGGCTGCTCTGCGCTGCATGGCTGTTTGAGTCGTGGC
AGGGCGCCACGGTCGCCGTCGTGCTTTTTGCCGCCCGCGTGGACGGGCCA
TCTTCCAACGGTGGCCTTAGCGGTTTCGGTGGCGGCGGCGTCGGCGGCGG
CTTGCGCGGCGCGGCTATGGTACCGGGCGGTGGTGGCGGCACCTGGGCGG
GCCGCTTTGAGGTGCGGAGCGACGCAGCGCGGTGCCTGGAGGGCGCGAGG
GACCTTTCGGCGCGGCTTATGACGTTTGTGACCAACAACCTCTTTGAGGA
AATGTCGACGGCGGACGGCGGAAGTGGCGGCAGGGACCCATTTGACGCAG
TCGGCGCTCACGCGTCTCCGGCTGCGCGGGGAAGCGCCGGAGCCTTGGAG
GCGTGGCGGGCTCTGAAGGGATTGAGGCCGCCCGGTGGCATCCGCGAGGC
CCCCGCAACACCCGAGATTTTTGCGTAAGGAAAAGAAAGGGCGACGAGAT
GGGGGCCATTTGTAGGGTTGACGTTTCCTCTATTCTTTGCTTTCTGCCCG
ATCTTTTGCTGGCCGCGGCGGAGCAGTGACGCTGTCCCCACGCCGCCTGC
TCGTCGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7659:2..2008-

>mRNA_P-wetherbeei_contig7659.1.1 ID=mRNA_P-wetherbeei_contig7659.1.1|Name=mRNA_P-wetherbeei_contig7659.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1644bp|location=Sequence derived from alignment at P-wetherbeei_contig7659:2..2008- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGGCGGCGCTGCGGCGGCTCTTCCTCTCGGACCTCGTGGCGGCGAC
GCCCCGCAGCGGCGTTGTGCCCGTCCGGCCGCTGCGGACCACCTCTGGCC
GTTTTGCGTACGGCGCCGACGCGCTGGCGACCGTTAATGGGCGGCTCTAT
CGCCACTTCTGCAGTTCGAGCGTTGGCTGCGGTGGCATTGTCGGCAGCGA
CCGGCGCACGCAGTCGCCGCTGACCGCGCTGGAGGCGCTGACAACTCCGC
CGGCCGATGCTGCGCGCTTTCGCGCGCTCAACGGTGGCAGCGATCCAATT
GTGGTCATGGCCAGTCACCTGCTGGACCGAGCGGGGAGGGGCGGTGCCTC
TGACGGCCTCTGCCGCAGCGGTGCCGGTGGCGGCGGCGGCAGCGGCGGAA
TCGGTGGCGGAGGCAGTGGTGGCAGCGGCGGCAGCCTAGGAAGCACAGGA
AGGGCGGCGGCCGGTGGGGTGATGCTGCGGCTGCGCGTGTACAATGCCAC
CAATGCGCGGCTGCCGGGCCTCCGGTTGGAGCTGACGCTTGGCGGCGGCG
CCGAGATGATGGCGCCGCGGGTCGGGCAGTGGGGCCGCGCCGTGCTCGAT
GTGCGAGAAACGCTCCTGCCGGGCCGGGAAATTTCCTGGGACGTTCGACT
GGCGACACGGCAGCACCTGCCGGACCTGACGATGAACGCGCTCGTCAGCT
TCCCGCACCCGGAGCCGGAAGCCGACCTGGAAGGGGATGGGGAGCCGACG
GTCGGGGATGCGGCGGTGGGCGGCGGCGGCGGCGGCGCGGGCGGCGTCGG
CGCGGGGGGTGGCGGCGGCGGGCTGGGCGCGACGGCGGGCGCGTCCAAGC
GGGGTGGCATGGATAGCACCAACGCCCTCGATGGCTGCGACGGCTGCTCG
GGCAGCCGCGGCGGGGCGGTCGTCGCCGTCGGCTGCTATACCATCCCGGC
CGAGGCGTTCCTGTGCCCGCCTCGCGCTGGGGCGCCCGCCTGGCCCGCCT
TTTTGGCCCTCTGGGGCGCGCTGCCGTGCCGCTTCTGCCTGGGCCTTCGG
GCGGCACCGCATCTGGCGGCGTTTGTGCCGACCGCCGCCGACGCCTACGC
GCTTCTGTCGGCGTTCGAGCTCGGCGCGAGGGACCCGCGGGCTGCGGGGC
GGGTCTGGCCACCGTCGCTGCCGGGGCAGCGGCTGCTCTGCGCTGCATGG
CTGTTTGAGTCGTGGCAGGGCGCCACGGTCGCCGTCGTGCTTTTTGCCGC
CCGCGTGGACGGGCCATCTTCCAACGGTGGCCTTAGCGGTTTCGGTGGCG
GCGGCGTCGGCGGCGGCTTGCGCGGCGCGGCTATGGTACCGGGCGGTGGT
GGCGGCACCTGGGCGGGCCGCTTTGAGGTGCGGAGCGACGCAGCGCGGTG
CCTGGAGGGCGCGAGGGACCTTTCGGCGCGGCTTATGACGTTTGTGACCA
ACAACCTCTTTGAGGAAATGTCGACGGCGGACGGCGGAAGTGGCGGCAGG
GACCCATTTGACGCAGTCGGCGCTCACGCGTCTCCGGCTGCGCGGGGAAG
CGCCGGAGCCTTGGAGGCGTGGCGGGCTCTGAAGGGATTGAGGCCGCCCG
GTGGCATCCGCGAGGCCCCCGCAACACCCGAGATTTTTGCGTAA
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