mRNA_P-wetherbeei_contig7644.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7644.3.1
Unique NamemRNA_P-wetherbeei_contig7644.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7644.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7644contigP-wetherbeei_contig7644:1142..2947 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1107
Hectar predicted targeting categorysignal peptide
Exons3
Cds size828
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186993.0526178-CDS-P-wetherbeei_contig7644:1141..12591683186993.0526178-CDS-P-wetherbeei_contig7644:1141..1259Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7644 1142..1259 -
1683186993.0636122-CDS-P-wetherbeei_contig7644:1595..17261683186993.0636122-CDS-P-wetherbeei_contig7644:1595..1726Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7644 1596..1726 -
1683186993.0762565-CDS-P-wetherbeei_contig7644:2091..26701683186993.0762565-CDS-P-wetherbeei_contig7644:2091..2670Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7644 2092..2670 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186993.0849054-UTR-P-wetherbeei_contig7644:2670..29471683186993.0849054-UTR-P-wetherbeei_contig7644:2670..2947Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7644 2671..2947 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7644.3.1prot_P-wetherbeei_contig7644.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7644 1142..2670 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7644.3.1

>prot_P-wetherbeei_contig7644.3.1 ID=prot_P-wetherbeei_contig7644.3.1|Name=mRNA_P-wetherbeei_contig7644.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=276bp
MHELLEVAKVAFACLGLALLLITRLAIAHIMDECIVCWPLPLTLVNVPMQ
ALRNQCSALAAQVLEAVAARTHVEEHLLLLHAWIKDNLRNQKLHVSSSRK
DNGKGSASTSSSSSHPSSPALSPPLSLEALRGVCLDAARRDTAASRRATA
QAEARADEMRCEVDRLRRRDGRADADAARLRERLASLLRARERRAEEDAI
TIRHLSDRVTAAEDSAAAARSKLAAVARCAAEGSGTRSELEAALRAARAD
VASLRNQRDAARADVVEARSCVTLLE
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mRNA from alignment at P-wetherbeei_contig7644:1142..2947-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7644.3.1 ID=mRNA_P-wetherbeei_contig7644.3.1|Name=mRNA_P-wetherbeei_contig7644.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1806bp|location=Sequence derived from alignment at P-wetherbeei_contig7644:1142..2947- (Phaeothamnion wetherbeei SAG_119_79)
GCAAAGGCGCGAAGCAGCTATCACTTTTTTTGCAGAATGACGGTCGCGGC
AGAGCTCCAGCTGGAGCACGGCGCGCTGCAAAACGAGGTGCTGATATTTG
CGCGACTCGATTTTCAAATCCGCCAATAAATTACAACCACGGAGAAGTTG
ACTTGTGAAAGAGAGAAAGAGACGGAAATGGATTGTTCTTGTCTCGCGCA
AACCGCTGCAAAATCTTTGTCAAAAACGGGCCTCATTGCCTTCCTGCCTT
CTTTCAAGACAATCGTTTAGTCTGGGGATGCACGAGCTGCTCGAGGTGGC
AAAAGTTGCATTTGCCTGCCTTGGTCTAGCGCTTTTGCTGATAACGCGGC
TTGCGATCGCTCACATCATGGATGAATGTATCGTCTGTTGGCCGCTGCCT
TTAACTCTCGTCAACGTCCCAATGCAGGCGTTGAGGAACCAATGCTCGGC
GCTGGCGGCACAGGTGCTGGAGGCGGTGGCCGCCCGGACGCATGTCGAAG
AGCACTTGCTCCTCCTCCACGCCTGGATCAAAGACAACTTGAGAAACCAA
AAGTTGCATGTGTCATCTTCTAGGAAAGACAACGGCAAAGGCTCCGCTTC
TACTTCTTCTTCTTCGTCTCATCCTTCTTCGCCGGCGCTGTCGCCGCCGC
TGTCCCTCGAGGCGCTGCGCGGCGTCTGCCTCGACGCGGCGCGGAGGGAC
ACCGCCGCGAGCCGCCGCGCCACGGCACAGGCGGAGGCCCGTGCCGACGA
GATGCGGTGCGAAGTCGACCGGCTGCGGCGGCGAGATGGACGGGCGGACG
CGGACGCGGCGCGGCTCCGGGAGAGGCTGGCCTCACTCCTGCGGGCTCGA
GAAAGGGTGAGCCGGCCCGGCTGGTTGACAGGAGCGCTTTGCTTCCTCGC
GATTCGTTTTGGTTCGTCTTTGGTACTCGGGAGAAAGCCTTGTCGCTGCC
GCTGCAGAGGACTGCGTTTCAGGCAGTGGAGCAGGCAGGTTAAGGTCGCA
TGAAACATGCACTACAAAGTCGTTCCAATCAGTTTCGCCCTCTTCCAATT
CGGTCGAATTGAAATGTGGAATGTGCGCTGCTCCTGTGCCACACCTCTTT
GGTTCCTGCCTTCGTCCGCCCACGCTGATGTGCTCGAACCCTCTCCTTTG
TTCCCTCTTCCCGCCTCTTCCCTCGTCTCCCCTCGTCCCTCTCCCTTTCT
CTCTCCTCTTTGGCGCCGCAGCGGGCCGAGGAAGACGCCATCACCATCAG
ACACTTGTCAGATCGAGTGACTGCGGCCGAAGATTCTGCGGCGGCGGCCC
GCTCGAAGCTGGCTGCTGTTGCGCGCTGCGCTGCAGAAGGCAGCGGCACG
AGGTCCGTGTAGAACGGCTTTCTTTTTTTCACATTGTTAAAGCCGCCGGG
AAAGGAGAAGGTCGCAATCGCGTTTCCTGTCTGCTTTTCATGTCTGTTCC
AGTAATGCGCCTACATCTACGGAGCGGCCTTGAAGTACATTGCCTCAACT
TTGACAAATCCTCTTGCCCAACCCTCTGCGCTACCCATGCCCGAACACCT
CGCCGCGCCGGCATCTCGCTAACGCCTTCCCTCGCCACTGCCCCACTGCC
GCTGCCACAACCGCCGCCGCTCCGTTCCTCTATCCCCTGCCTTTCCCGGT
TGCCATGCTGCCTCCCGTCGCAATCGTCGCTCTTACAGGTCGGAGCTGGA
AGCGGCGCTGCGGGCCGCCCGCGCCGACGTCGCCTCCCTGCGCAACCAGC
GGGACGCGGCGCGTGCCGACGTTGTCGAGGCGCGCAGCTGTGTTACGCTG
CTGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7644:1142..2947-

>mRNA_P-wetherbeei_contig7644.3.1 ID=mRNA_P-wetherbeei_contig7644.3.1|Name=mRNA_P-wetherbeei_contig7644.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=828bp|location=Sequence derived from alignment at P-wetherbeei_contig7644:1142..2947- (Phaeothamnion wetherbeei SAG_119_79)
ATGCACGAGCTGCTCGAGGTGGCAAAAGTTGCATTTGCCTGCCTTGGTCT
AGCGCTTTTGCTGATAACGCGGCTTGCGATCGCTCACATCATGGATGAAT
GTATCGTCTGTTGGCCGCTGCCTTTAACTCTCGTCAACGTCCCAATGCAG
GCGTTGAGGAACCAATGCTCGGCGCTGGCGGCACAGGTGCTGGAGGCGGT
GGCCGCCCGGACGCATGTCGAAGAGCACTTGCTCCTCCTCCACGCCTGGA
TCAAAGACAACTTGAGAAACCAAAAGTTGCATGTGTCATCTTCTAGGAAA
GACAACGGCAAAGGCTCCGCTTCTACTTCTTCTTCTTCGTCTCATCCTTC
TTCGCCGGCGCTGTCGCCGCCGCTGTCCCTCGAGGCGCTGCGCGGCGTCT
GCCTCGACGCGGCGCGGAGGGACACCGCCGCGAGCCGCCGCGCCACGGCA
CAGGCGGAGGCCCGTGCCGACGAGATGCGGTGCGAAGTCGACCGGCTGCG
GCGGCGAGATGGACGGGCGGACGCGGACGCGGCGCGGCTCCGGGAGAGGC
TGGCCTCACTCCTGCGGGCTCGAGAAAGGCGGGCCGAGGAAGACGCCATC
ACCATCAGACACTTGTCAGATCGAGTGACTGCGGCCGAAGATTCTGCGGC
GGCGGCCCGCTCGAAGCTGGCTGCTGTTGCGCGCTGCGCTGCAGAAGGCA
GCGGCACGAGGTCGGAGCTGGAAGCGGCGCTGCGGGCCGCCCGCGCCGAC
GTCGCCTCCCTGCGCAACCAGCGGGACGCGGCGCGTGCCGACGTTGTCGA
GGCGCGCAGCTGTGTTACGCTGCTGGAG
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