mRNA_P-wetherbeei_contig7643.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7643.3.1
Unique NamemRNA_P-wetherbeei_contig7643.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7643.3.1 vs. uniprot
Match: A0A521Z4X1_9PROT (Pilus assembly protein PilO n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A521Z4X1_9PROT)

HSP 1 Score: 245 bits (625), Expect = 4.000e-80
Identity = 125/161 (77.64%), Postives = 140/161 (86.96%), Query Frame = 1
Query:    1 EAGKVQETKLKDDYLNKKKQSVNLDLHKQQLREIDQSFGALLKQLPNRAQMDALLVDINQAGLGRGLQFELFKPAAGESAKEFYAELPIQVRVVGNYHDMGAFASDLGQLSRIVTLNDVTIASGKDGQLQMDATARTFRYLDDEEVAAQRKSTKAAKAPKK 483
            E G+ +E KLK DYLNKKKQ+VNLDLH+QQLREID  FGALL+QLPN++QMDALLVDINQAGLGRGLQFELFKPA  ES +EFYAELPIQV+V+G YHDMGAFASD+GQLSRIVTLNDV I + KDG L M+ATARTFRYLD+ EVAAQRK+  A K  KK
Sbjct:   56 ERGRGEEAKLKQDYLNKKKQAVNLDLHRQQLREIDTQFGALLRQLPNKSQMDALLVDINQAGLGRGLQFELFKPAPSESVREFYAELPIQVKVIGTYHDMGAFASDVGQLSRIVTLNDVKIDASKDGNLMMEATARTFRYLDETEVAAQRKAAAAQKGAKK 216          
BLAST of mRNA_P-wetherbeei_contig7643.3.1 vs. uniprot
Match: A0A537BP16_9PROT (Pilus assembly protein PilO n=5 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537BP16_9PROT)

HSP 1 Score: 244 bits (624), Expect = 5.310e-80
Identity = 123/152 (80.92%), Postives = 139/152 (91.45%), Query Frame = 1
Query:    1 EAGKVQETKLKDDYLNKKKQSVNLDLHKQQLREIDQSFGALLKQLPNRAQMDALLVDINQAGLGRGLQFELFKPAAGESAKEFYAELPIQVRVVGNYHDMGAFASDLGQLSRIVTLNDVTIASGKDGQLQMDATARTFRYLDDEEVAAQRKS 456
            E G+ QETKLK++YL KKKQ++NLDLH+QQLREID  FGALL+QLPNR+QMDALLVDINQAGLGRGLQFELFKPA  E+ +EFYAELPIQV+VVGNYHDMGAFASD+GQLSRIVTLNDV+I +GKDG L MD  ARTFRYLD+EEVAAQRK+
Sbjct:   56 ENGRNQETKLKEEYLGKKKQAINLDLHRQQLREIDTQFGALLRQLPNRSQMDALLVDINQAGLGRGLQFELFKPAPSETVREFYAELPIQVKVVGNYHDMGAFASDVGQLSRIVTLNDVSIQAGKDGILTMDVVARTFRYLDEEEVAAQRKA 207          
BLAST of mRNA_P-wetherbeei_contig7643.3.1 vs. uniprot
Match: A0A1F4CWX1_9PROT (Pilus assembly protein PilO n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 TaxID=1797504 RepID=A0A1F4CWX1_9PROT)

HSP 1 Score: 241 bits (615), Expect = 1.370e-78
Identity = 122/161 (75.78%), Postives = 141/161 (87.58%), Query Frame = 1
Query:    1 EAGKVQETKLKDDYLNKKKQSVNLDLHKQQLREIDQSFGALLKQLPNRAQMDALLVDINQAGLGRGLQFELFKPAAGESAKEFYAELPIQVRVVGNYHDMGAFASDLGQLSRIVTLNDVTIASGKDGQLQMDATARTFRYLDDEEVAAQRKSTKAAKAPKK 483
            E+G+ QE  LK  YL KKKQ++NLDLH+QQLREID  FGALL+QLPN++QMDALLVDINQAGLGRGLQF+LFKPAA ES K+FYAELPIQV+V+G YHDMGAFASD+GQLSRIVTLN+V I +GKDG L MDATARTFRYLD++E+AAQRK+  A K  KK
Sbjct:   56 ESGRNQEESLKQQYLGKKKQAINLDLHRQQLREIDTQFGALLRQLPNKSQMDALLVDINQAGLGRGLQFDLFKPAANESVKDFYAELPIQVKVLGTYHDMGAFASDVGQLSRIVTLNNVAINAGKDGTLLMDATARTFRYLDEDEIAAQRKAQAAKKGAKK 216          
BLAST of mRNA_P-wetherbeei_contig7643.3.1 vs. uniprot
Match: A0A536SKN7_9PROT (Pilus assembly protein PilO n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536SKN7_9PROT)

HSP 1 Score: 241 bits (614), Expect = 2.010e-78
Identity = 122/152 (80.26%), Postives = 136/152 (89.47%), Query Frame = 1
Query:   16 QETKLKDDYLNKKKQSVNLDLHKQQLREIDQSFGALLKQLPNRAQMDALLVDINQAGLGRGLQFELFKPAAGESAKEFYAELPIQVRVVGNYHDMGAFASDLGQLSRIVTLNDVTIASGKDGQLQMDATARTFRYLDDEEVAAQRKSTKAAK 471
            QETKLK++YLNKKKQ++NLDLH+QQLREID  FGALL+QLPNR+QMDALLVDINQAGLGRGL F+LF+PA  E  +EFYAE PI V+VVG YHDMGAFASD+GQL RIVTLNDVTI +GKD QL MDATARTFRYLDDEE+AAQRKS  AAK
Sbjct:   61 QETKLKEEYLNKKKQAINLDLHRQQLREIDTQFGALLRQLPNRSQMDALLVDINQAGLGRGLLFDLFRPAPSEITREFYAERPISVKVVGTYHDMGAFASDVGQLPRIVTLNDVTITAGKDSQLTMDATARTFRYLDDEELAAQRKSQAAAK 212          
BLAST of mRNA_P-wetherbeei_contig7643.3.1 vs. uniprot
Match: A0A1F3X7T1_9PROT (Pilus assembly protein PilO n=3 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F3X7T1_9PROT)

HSP 1 Score: 236 bits (603), Expect = 7.520e-77
Identity = 120/161 (74.53%), Postives = 142/161 (88.20%), Query Frame = 1
Query:    1 EAGKVQETKLKDDYLNKKKQSVNLDLHKQQLREIDQSFGALLKQLPNRAQMDALLVDINQAGLGRGLQFELFKPAAGESAKEFYAELPIQVRVVGNYHDMGAFASDLGQLSRIVTLNDVTIASGKDGQLQMDATARTFRYLDDEEVAAQRKSTKAAKAPKK 483
            +AG+ +E KLKD Y  KK Q++NLDL++QQLREID SFGALLKQLPNR+QMDALLVDINQAGLGRGLQFELFKPA GE+A+EFYAELPIQ+++ G YHDMG FA+D+ QL RIVTLND+T+A+GK G + MDATARTFRYLDD EVA+QR++ KAAKA KK
Sbjct:   52 DAGRSEEVKLKDAYKGKKAQAINLDLYRQQLREIDSSFGALLKQLPNRSQMDALLVDINQAGLGRGLQFELFKPATGEAAREFYAELPIQLKITGTYHDMGQFAADISQLPRIVTLNDLTLAAGK-GAITMDATARTFRYLDDAEVASQRRAAKAAKAGKK 211          
BLAST of mRNA_P-wetherbeei_contig7643.3.1 vs. uniprot
Match: A0A1F4EIV7_9PROT (Pilus assembly protein PilO n=5 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4EIV7_9PROT)

HSP 1 Score: 236 bits (601), Expect = 1.850e-76
Identity = 119/157 (75.80%), Postives = 137/157 (87.26%), Query Frame = 1
Query:    1 EAGKVQETKLKDDYLNKKKQSVNLDLHKQQLREIDQSFGALLKQLPNRAQMDALLVDINQAGLGRGLQFELFKPAAGESAKEFYAELPIQVRVVGNYHDMGAFASDLGQLSRIVTLNDVTIASGKDGQLQMDATARTFRYLDDEEVAAQRKSTKAAK 471
            +AG+ QETKLKD+YLNKKKQ++NLDLHKQQLREID  FGALLKQLPN++QMDALLVDINQAGLGRGLQFELFKPAA E   E + ELPIQ++V G YHDMGAFASD+GQLSRIV L DV + +GKDG L MD+ ARTFRYLD+EEVAAQR++ + AK
Sbjct:   56 DAGRAQETKLKDEYLNKKKQAINLDLHKQQLREIDTQFGALLKQLPNKSQMDALLVDINQAGLGRGLQFELFKPAAAEVRGESFNELPIQLKVTGTYHDMGAFASDVGQLSRIVILKDVAMTAGKDGNLVMDSVARTFRYLDEEEVAAQRRAQQGAK 212          
BLAST of mRNA_P-wetherbeei_contig7643.3.1 vs. uniprot
Match: A0A536SD58_9PROT (Pilus assembly protein PilO n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536SD58_9PROT)

HSP 1 Score: 235 bits (599), Expect = 3.150e-76
Identity = 115/161 (71.43%), Postives = 143/161 (88.82%), Query Frame = 1
Query:    1 EAGKVQETKLKDDYLNKKKQSVNLDLHKQQLREIDQSFGALLKQLPNRAQMDALLVDINQAGLGRGLQFELFKPAAGESAKEFYAELPIQVRVVGNYHDMGAFASDLGQLSRIVTLNDVTIASGKDGQLQMDATARTFRYLDDEEVAAQRKSTKAAKAPKK 483
            EAG+ QE KLKD+Y+ K++Q++NLDL++QQLREID SFGALLKQLPNR+QMDALLVDINQAGLGRGLQF+LF+PA  E+ +EFYAELP+ +++ G+YHDMG FASD+GQLSRIVTLND+ + + K+G L MD TA+TFRYLD+EEVAAQ ++TKAAKA KK
Sbjct:   52 EAGRAQEAKLKDEYVAKQQQAINLDLYRQQLREIDSSFGALLKQLPNRSQMDALLVDINQAGLGRGLQFDLFRPAPAETKREFYAELPVTLKLNGSYHDMGQFASDIGQLSRIVTLNDIALTAAKEGSLVMDVTAKTFRYLDEEEVAAQNRATKAAKAGKK 212          
BLAST of mRNA_P-wetherbeei_contig7643.3.1 vs. uniprot
Match: A0A536WQK5_9PROT (Pilus assembly protein PilO n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536WQK5_9PROT)

HSP 1 Score: 234 bits (598), Expect = 5.450e-76
Identity = 116/151 (76.82%), Postives = 135/151 (89.40%), Query Frame = 1
Query:   19 ETKLKDDYLNKKKQSVNLDLHKQQLREIDQSFGALLKQLPNRAQMDALLVDINQAGLGRGLQFELFKPAAGESAKEFYAELPIQVRVVGNYHDMGAFASDLGQLSRIVTLNDVTIASGKDGQLQMDATARTFRYLDDEEVAAQRKSTKAAK 471
            ETKLK++YL KKKQ++NLDLH+QQLREID  FGALL+QLPNR+QMDALLVDINQAGLGRGLQF+LF+PA  E  ++FYAE PI V+VVGNYHDMGAFASD+GQL RIVTLNDV I +GKD QL MDATARTFRYLD+EE+A QRK+ +AA+
Sbjct:   62 ETKLKEEYLAKKKQAINLDLHRQQLREIDTQFGALLRQLPNRSQMDALLVDINQAGLGRGLQFDLFRPAPSEITRDFYAERPISVKVVGNYHDMGAFASDVGQLPRIVTLNDVNITAGKDNQLTMDATARTFRYLDEEEIAVQRKAAQAAR 212          
BLAST of mRNA_P-wetherbeei_contig7643.3.1 vs. uniprot
Match: A0A1F4AL53_9PROT (Pilus assembly protein PilO n=3 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4AL53_9PROT)

HSP 1 Score: 233 bits (595), Expect = 1.410e-75
Identity = 118/163 (72.39%), Postives = 144/163 (88.34%), Query Frame = 1
Query:    1 EAGKVQETKLKDDYLNKKKQSVNLDLHKQQLREIDQSFGALLKQLPNRAQMDALLVDINQAGLGRGLQFELFKPAAGESAKEFYAELPIQVRVVGNYHDMGAFASDLGQLSRIVTLNDVTIASGKDGQLQMDATARTFRYLDDEEVAAQRKST--KAAKAPKK 483
            +AG  QE KLKD+Y NKK++S+NLDL++QQLREID SFGALLKQLPNR+QMDALLVDINQAGLGRGLQF+LFKPAA ESA++FY ELPIQ++V+G YHD+GAFASD+G LSRIVTLND+ ++ GK G L +DATA+TFRYLD+EEVA+QR++T  K AK  +K
Sbjct:   53 DAGVAQEAKLKDEYKNKKQKSINLDLYRQQLREIDSSFGALLKQLPNRSQMDALLVDINQAGLGRGLQFDLFKPAAQESARDFYTELPIQLKVIGTYHDIGAFASDIGGLSRIVTLNDLALSGGKGGALTLDATAKTFRYLDEEEVASQRRATAQKGAKRGRK 215          
BLAST of mRNA_P-wetherbeei_contig7643.3.1 vs. uniprot
Match: A0A1F4B2J3_9PROT (Pilus assembly protein PilO n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_66_14 TaxID=1797490 RepID=A0A1F4B2J3_9PROT)

HSP 1 Score: 233 bits (595), Expect = 1.460e-75
Identity = 120/161 (74.53%), Postives = 136/161 (84.47%), Query Frame = 1
Query:    1 EAGKVQETKLKDDYLNKKKQSVNLDLHKQQLREIDQSFGALLKQLPNRAQMDALLVDINQAGLGRGLQFELFKPAAGESAKEFYAELPIQVRVVGNYHDMGAFASDLGQLSRIVTLNDVTIASGKDGQLQMDATARTFRYLDDEEVAAQRKSTKAAKAPKK 483
            +AG+ QE KLKD+Y+ KK Q+VNLDLHKQQLREID  FGALLKQLPNR+QMDALLVDINQAGLGRGLQFELFKPA GE   E Y ELPIQ+RV G YHDMGAFASD+GQLSRIV L D+ + + KDG L MDA ARTFRYLD+EEVAA+R++  A+KA KK
Sbjct:   56 DAGRTQEVKLKDEYVKKKTQAVNLDLHKQQLREIDTQFGALLKQLPNRSQMDALLVDINQAGLGRGLQFELFKPAGGEITGESYNELPIQLRVTGTYHDMGAFASDVGQLSRIVILKDIAMQAQKDGNLVMDAVARTFRYLDEEEVAARRRAQSASKAAKK 216          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7643.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A521Z4X1_9PROT4.000e-8077.64Pilus assembly protein PilO n=2 Tax=unclassified B... [more]
A0A537BP16_9PROT5.310e-8080.92Pilus assembly protein PilO n=5 Tax=Betaproteobact... [more]
A0A1F4CWX1_9PROT1.370e-7875.78Pilus assembly protein PilO n=1 Tax=Betaproteobact... [more]
A0A536SKN7_9PROT2.010e-7880.26Pilus assembly protein PilO n=1 Tax=Betaproteobact... [more]
A0A1F3X7T1_9PROT7.520e-7774.53Pilus assembly protein PilO n=3 Tax=unclassified B... [more]
A0A1F4EIV7_9PROT1.850e-7675.80Pilus assembly protein PilO n=5 Tax=unclassified B... [more]
A0A536SD58_9PROT3.150e-7671.43Pilus assembly protein PilO n=1 Tax=Betaproteobact... [more]
A0A536WQK5_9PROT5.450e-7676.82Pilus assembly protein PilO n=2 Tax=Betaproteobact... [more]
A0A1F4AL53_9PROT1.410e-7572.39Pilus assembly protein PilO n=3 Tax=unclassified B... [more]
A0A1F4B2J3_9PROT1.460e-7574.53Pilus assembly protein PilO n=1 Tax=Betaproteobact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7643contigP-wetherbeei_contig7643:2539..3024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog522306.CAP2UW1_4187
Preferred namepilO
PFAMsPilO
Model size486
Max annot lvl28216|Betaproteobacteria
KEGG koko:K02664
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.52e-63
EggNOG OGsCOG3167@1|root,COG3167@2|Bacteria,1RBGW@1224|Proteobacteria,2VH68@28216|Betaproteobacteria
DescriptionPilus assembly protein, PilO
Cds size486
COG categoryNU
BRITEko00000,ko02035,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186993.015216-CDS-P-wetherbeei_contig7643:2538..30241683186993.015216-CDS-P-wetherbeei_contig7643:2538..3024Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7643 2539..3024 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7643.3.1prot_P-wetherbeei_contig7643.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7643 2539..3024 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7643.3.1

>prot_P-wetherbeei_contig7643.3.1 ID=prot_P-wetherbeei_contig7643.3.1|Name=mRNA_P-wetherbeei_contig7643.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=162bp
EAGKVQETKLKDDYLNKKKQSVNLDLHKQQLREIDQSFGALLKQLPNRAQ
MDALLVDINQAGLGRGLQFELFKPAAGESAKEFYAELPIQVRVVGNYHDM
GAFASDLGQLSRIVTLNDVTIASGKDGQLQMDATARTFRYLDDEEVAAQR
KSTKAAKAPKK*
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mRNA from alignment at P-wetherbeei_contig7643:2539..3024-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7643.3.1 ID=mRNA_P-wetherbeei_contig7643.3.1|Name=mRNA_P-wetherbeei_contig7643.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig7643:2539..3024- (Phaeothamnion wetherbeei SAG_119_79)
GAGGCCGGCAAGGTGCAGGAAACCAAGCTCAAGGACGACTACCTCAACAA GAAGAAGCAGTCGGTCAACCTCGACCTGCACAAGCAGCAGCTGCGTGAGA TCGACCAGTCGTTTGGCGCTTTGCTCAAGCAGTTGCCCAACCGCGCACAG ATGGACGCGCTGCTCGTCGACATCAACCAGGCCGGCCTCGGGCGCGGCCT GCAGTTCGAGTTGTTCAAGCCGGCCGCCGGCGAGTCGGCGAAGGAGTTCT ACGCCGAGCTGCCCATCCAGGTGCGGGTGGTCGGCAACTACCACGACATG GGCGCGTTCGCGAGCGACCTGGGCCAGCTTTCGCGCATCGTCACGCTCAA CGACGTGACGATCGCCTCGGGCAAGGACGGCCAGCTGCAGATGGACGCCA CCGCGCGGACCTTCCGCTACCTCGACGACGAGGAAGTCGCGGCCCAGCGC AAGTCCACCAAGGCCGCCAAGGCGCCCAAGAAATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7643:2539..3024-

>mRNA_P-wetherbeei_contig7643.3.1 ID=mRNA_P-wetherbeei_contig7643.3.1|Name=mRNA_P-wetherbeei_contig7643.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig7643:2539..3024- (Phaeothamnion wetherbeei SAG_119_79)
GAGGCCGGCAAGGTGCAGGAAACCAAGCTCAAGGACGACTACCTCAACAA
GAAGAAGCAGTCGGTCAACCTCGACCTGCACAAGCAGCAGCTGCGTGAGA
TCGACCAGTCGTTTGGCGCTTTGCTCAAGCAGTTGCCCAACCGCGCACAG
ATGGACGCGCTGCTCGTCGACATCAACCAGGCCGGCCTCGGGCGCGGCCT
GCAGTTCGAGTTGTTCAAGCCGGCCGCCGGCGAGTCGGCGAAGGAGTTCT
ACGCCGAGCTGCCCATCCAGGTGCGGGTGGTCGGCAACTACCACGACATG
GGCGCGTTCGCGAGCGACCTGGGCCAGCTTTCGCGCATCGTCACGCTCAA
CGACGTGACGATCGCCTCGGGCAAGGACGGCCAGCTGCAGATGGACGCCA
CCGCGCGGACCTTCCGCTACCTCGACGACGAGGAAGTCGCGGCCCAGCGC
AAGTCCACCAAGGCCGCCAAGGCGCCCAAGAAATGA
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