mRNA_P-wetherbeei_contig7636.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7636.3.1
Unique NamemRNA_P-wetherbeei_contig7636.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7636.3.1 vs. uniprot
Match: A0A3C0TU89_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TU89_9PROT)

HSP 1 Score: 110 bits (274), Expect = 1.470e-28
Identity = 64/122 (52.46%), Postives = 85/122 (69.67%), Query Frame = 1 
Query:    1 MTNRIIVLLIIMQIAALPAWAAVVEVEQTTKCQVIERHVPDADVAYQPGRDVVAGKPVAPADLPAGPDGAAQ-IAVPQNFDIEIDADLAGSVAGAQDPAP-YLPRAKIGKVQVKNLEGETTL 360
            M    +V  ++  + +LPA AA  E+   T+C++I RHVPD DV Y+PG+DVV G+PV PADL    +GAA  + VPQ F+IEIDA L G+V+    PAP Y PRAKIG+VQVK+LEG+ +L
Sbjct:    1 MRKEFLVWALLAPVFSLPAGAAQTEIAPATECRMIPRHVPDPDVTYRPGQDVVNGQPVPPADL----EGAASPLIVPQEFEIEIDAGLNGAVSAPGHPAPLYQPRAKIGRVQVKDLEGDPSL 118
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BLAST of mRNA_P-wetherbeei_contig7636.3.1 vs. uniprot
Match: UPI001B01F4D5 (Uncharacterized protein n=1 Tax=Rhodospirillales bacterium TMPK1 TaxID=2812848 RepID=UPI001B01F4D5)

HSP 1 Score: 65.1 bits (157), Expect = 6.670e-11
Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = 1 
Query:   22 LLIIMQIAALPAWAAVVEVEQTTKCQVIERHVPDADVAYQPGRDVVAGKPVAPADLPAGPDGAAQIAVPQNFDIEIDADLA 264
            LL+ + + A PA A  V V+Q+  C++  RHVP ADV Y+PGRDVV GKPVAPAD+      +  + VP+NF I I  D+A
Sbjct:    4 LLVALLLTASPAVAQTVTVDQSA-CRLATRHVPAADVEYKPGRDVVNGKPVAPADI------SPPLQVPRNFQIVIAVDVA 77
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BLAST of mRNA_P-wetherbeei_contig7636.3.1 vs. uniprot
Match: A0A7C7PXT4_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Kiloniellaceae bacterium TaxID=2480820 RepID=A0A7C7PXT4_9PROT)

HSP 1 Score: 56.6 bits (135), Expect = 7.140e-8
Identity = 39/72 (54.17%), Postives = 46/72 (63.89%), Query Frame = 1 
Query:   52 PAWAAVVEVEQT-TKCQVIERHVPDADVAYQPGRDVVAGKPVAPADLPAGPDGAAQ-IAVPQNFDIEIDADL 261
            PAWA    +  T   CQ + RH+P ADVAYQPG DV  G+PVAPADL A   GAA  +A+PQ   I I+ DL
Sbjct:   41 PAWAEQPYLTITRADCQRLVRHLPAADVAYQPGVDV-RGRPVAPADLGAAEPGAAPPLALPQAVIIPIEVDL 111
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7636.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A3C0TU89_9PROT1.470e-2852.46Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
UPI001B01F4D56.670e-1149.38Uncharacterized protein n=1 Tax=Rhodospirillales b... [more]
A0A7C7PXT4_9PROT7.140e-854.17Uncharacterized protein (Fragment) n=1 Tax=Kilonie... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7636contigP-wetherbeei_contig7636:2671..3030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog414684.RC1_1219
Model size360
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.03e-08
EggNOG OGs2EB2N@1|root,3353E@2|Bacteria,1NBWS@1224|Proteobacteria,2UFNM@28211|Alphaproteobacteria,2JUHM@204441|Rhodospirillales
Cds size360
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186992.8147476-CDS-P-wetherbeei_contig7636:2670..30301683186992.8147476-CDS-P-wetherbeei_contig7636:2670..3030Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7636 2671..3030 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7636.3.1prot_P-wetherbeei_contig7636.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7636 2671..3030 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7636.3.1

>prot_P-wetherbeei_contig7636.3.1 ID=prot_P-wetherbeei_contig7636.3.1|Name=mRNA_P-wetherbeei_contig7636.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=120bp
MTNRIIVLLIIMQIAALPAWAAVVEVEQTTKCQVIERHVPDADVAYQPGR
DVVAGKPVAPADLPAGPDGAAQIAVPQNFDIEIDADLAGSVAGAQDPAPY
LPRAKIGKVQVKNLEGETTL
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mRNA from alignment at P-wetherbeei_contig7636:2671..3030+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7636.3.1 ID=mRNA_P-wetherbeei_contig7636.3.1|Name=mRNA_P-wetherbeei_contig7636.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig7636:2671..3030+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCAATCGAATTATAGTGTTGTTAATCATTATGCAGATCGCTGCGCT
TCCGGCGTGGGCGGCGGTGGTTGAGGTTGAGCAGACCACGAAATGCCAGG
TGATTGAACGCCATGTTCCAGATGCGGACGTGGCCTATCAGCCTGGCCGC
GACGTCGTAGCGGGAAAGCCGGTGGCCCCCGCCGATCTGCCCGCCGGCCC
GGATGGGGCGGCGCAGATAGCGGTTCCGCAAAATTTCGATATTGAAATAG
ACGCCGATCTGGCGGGCAGCGTCGCGGGTGCGCAAGACCCCGCCCCCTAT
CTGCCGCGTGCCAAAATTGGCAAGGTCCAGGTAAAGAATTTAGAAGGTGA
GACGACGCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7636:2671..3030+

>mRNA_P-wetherbeei_contig7636.3.1 ID=mRNA_P-wetherbeei_contig7636.3.1|Name=mRNA_P-wetherbeei_contig7636.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig7636:2671..3030+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCAATCGAATTATAGTGTTGTTAATCATTATGCAGATCGCTGCGCT
TCCGGCGTGGGCGGCGGTGGTTGAGGTTGAGCAGACCACGAAATGCCAGG
TGATTGAACGCCATGTTCCAGATGCGGACGTGGCCTATCAGCCTGGCCGC
GACGTCGTAGCGGGAAAGCCGGTGGCCCCCGCCGATCTGCCCGCCGGCCC
GGATGGGGCGGCGCAGATAGCGGTTCCGCAAAATTTCGATATTGAAATAG
ACGCCGATCTGGCGGGCAGCGTCGCGGGTGCGCAAGACCCCGCCCCCTAT
CTGCCGCGTGCCAAAATTGGCAAGGTCCAGGTAAAGAATTTAGAAGGTGA
GACGACGCTC
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