mRNA_P-wetherbeei_contig12888.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12888.1.1
Unique NamemRNA_P-wetherbeei_contig12888.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12888.1.1 vs. uniprot
Match: UPI0013EE3B56 (hypothetical protein n=1 Tax=Caulobacter soli TaxID=2708539 RepID=UPI0013EE3B56)

HSP 1 Score: 57.8 bits (138), Expect = 4.280e-5
Identity = 59/139 (42.45%), Postives = 82/139 (58.99%), Query Frame = 1 
Query:    7 ATRDLTLTATAGSVTISTLAQAGDDVRVSATTGIV-AGAAILTSTGAGTDTEADGFNVVASTSGGNATVGTA-----TNGATGDVTVTAAAGAASLTSGDSKNDLIVSGKSASLGTGTAAQDIKVTGTAGDAKVTTSAT 405
            A RD+ LT T G+ +++    AGDD+ ++A+ G V A  AIL STG G   +A   +++  +  G+ T  T      T    GD+TV AA  A   T+ DS  DL ++G SASL  G+AA+D+ VT T G+A VTTSAT
Sbjct:  324 AVRDVFLTGTTGA-SVANRIFAGDDIEITASNGDVDASGAILRSTGLGASDDA---HILLRSDTGSVTADTTLLTQGTGAQAGDITVQAATDAIVGTA-DSTRDLKITGTSASLDNGSAARDLFVTATTGNATVTTSAT 457
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12888.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI0013EE3B564.280e-542.45hypothetical protein n=1 Tax=Caulobacter soli TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12888contigP-wetherbeei_contig12888:144..1568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1449049.JONW01000005_gene1192
PFAMsDUF4097,FG-GAP_2,Laminin_G_3,PA14
Model size1425
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.61e-06
EggNOG OGsCOG3595@1|root,COG3595@2|Bacteria
Cds size1425
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185965.0746582-CDS-P-wetherbeei_contig12888:143..15681683185965.0746582-CDS-P-wetherbeei_contig12888:143..1568Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12888 144..1568 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12888.1.1prot_P-wetherbeei_contig12888.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12888 144..1568 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12888.1.1

>prot_P-wetherbeei_contig12888.1.1 ID=prot_P-wetherbeei_contig12888.1.1|Name=mRNA_P-wetherbeei_contig12888.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=475bp
GTATRDLTLTATAGSVTISTLAQAGDDVRVSATTGIVAGAAILTSTGAGT
DTEADGFNVVASTSGGNATVGTATNGATGDVTVTAAAGAASLTSGDSKND
LIVSGKSASLGTGTAAQDIKVTGTAGDAKVTTSATATRDVIVSSTGGDAQ
VTTASGRDIAVSGGAASLTTGTATRDIAVSGASATLDSGTASGDVTLTAS
TGDANVTTKAQGANVGITAAAGNSNVALATATAGDVTVSAANGAASLTSS
TATRDLTLSGKSATLGSGVAGRDATLTATAGDATVTTLAQAGDDVRVMAG
AGSVVAGGAVVQSTGAGADTEADGANAVVTASGVATVGTANSGATGDVTV
TASGGAATLDAGSAGRDLLVDGFSVSSAGLLKAGRDVAVRGRTGSIAIKD
AQAGDDVVLRAPGSITVAGGLTTTNGPDSDATAAGDVLYATGKTSFNGLT
FDLAGSTVDLRTTTGNIAVAGAIDA
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mRNA from alignment at P-wetherbeei_contig12888:144..1568-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12888.1.1 ID=mRNA_P-wetherbeei_contig12888.1.1|Name=mRNA_P-wetherbeei_contig12888.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1425bp|location=Sequence derived from alignment at P-wetherbeei_contig12888:144..1568- (Phaeothamnion wetherbeei SAG_119_79)
GGTACGGCGACCCGCGACCTGACCCTCACGGCGACGGCCGGCTCCGTGAC
GATCTCGACGCTGGCCCAGGCCGGCGACGACGTGCGGGTCTCCGCCACGA
CCGGCATTGTGGCTGGCGCCGCCATCTTGACCAGCACCGGCGCTGGCACG
GACACCGAAGCCGATGGCTTCAACGTCGTGGCGTCCACGTCCGGAGGCAA
CGCCACGGTCGGCACAGCCACCAATGGAGCCACCGGCGACGTCACCGTCA
CGGCTGCCGCCGGCGCGGCCAGCCTGACGAGCGGCGACTCCAAGAACGAC
CTGATCGTCTCCGGGAAGTCGGCCTCTCTGGGGACCGGCACGGCCGCCCA
GGACATCAAGGTCACCGGCACGGCCGGCGACGCCAAGGTGACCACCTCGG
CCACGGCCACGCGCGACGTGATCGTCAGCTCGACCGGCGGCGACGCCCAG
GTGACGACGGCTTCCGGCCGCGACATCGCGGTCAGCGGCGGGGCGGCCAG
CCTGACAACCGGCACCGCGACCCGCGACATCGCCGTCAGCGGCGCCTCGG
CGACGCTGGACAGCGGCACGGCGAGCGGCGACGTGACCCTCACGGCTTCG
ACCGGCGATGCGAACGTCACCACCAAGGCCCAAGGCGCAAACGTCGGCAT
CACGGCCGCGGCCGGCAATTCGAACGTGGCGCTGGCGACAGCAACCGCGG
GCGACGTGACGGTGTCCGCGGCCAACGGCGCGGCCTCCCTGACCAGCAGC
ACGGCCACGCGCGACCTCACGCTCAGCGGCAAGTCGGCCACGCTGGGCAG
CGGCGTGGCCGGCCGCGATGCGACGCTGACGGCCACCGCCGGCGACGCGA
CAGTGACGACGCTTGCCCAGGCCGGCGACGACGTTCGCGTCATGGCCGGC
GCCGGGAGCGTCGTGGCCGGCGGCGCGGTGGTCCAATCGACCGGCGCGGG
AGCCGACACCGAGGCGGACGGCGCCAACGCGGTCGTCACGGCGTCCGGTG
TGGCCACGGTCGGCACGGCCAACAGCGGCGCGACCGGCGACGTGACGGTC
ACGGCGAGCGGCGGGGCAGCGACCCTCGACGCAGGCAGCGCAGGCCGCGA
CCTGCTCGTGGACGGATTCTCGGTGTCCTCCGCCGGCCTCCTGAAGGCCG
GTCGCGACGTGGCGGTGCGCGGCCGCACGGGAAGCATCGCGATCAAGGAC
GCCCAGGCCGGTGACGACGTCGTGCTGCGCGCGCCCGGGAGCATCACGGT
CGCGGGCGGCCTGACCACGACCAACGGTCCCGACAGCGATGCGACGGCCG
CTGGCGACGTGCTCTACGCCACCGGCAAGACCAGCTTCAACGGCCTGACG
TTCGATCTGGCCGGCTCGACCGTCGACCTACGCACCACGACCGGCAACAT
CGCCGTGGCCGGCGCCATCGACGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12888:144..1568-

>mRNA_P-wetherbeei_contig12888.1.1 ID=mRNA_P-wetherbeei_contig12888.1.1|Name=mRNA_P-wetherbeei_contig12888.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1425bp|location=Sequence derived from alignment at P-wetherbeei_contig12888:144..1568- (Phaeothamnion wetherbeei SAG_119_79)
GGTACGGCGACCCGCGACCTGACCCTCACGGCGACGGCCGGCTCCGTGAC
GATCTCGACGCTGGCCCAGGCCGGCGACGACGTGCGGGTCTCCGCCACGA
CCGGCATTGTGGCTGGCGCCGCCATCTTGACCAGCACCGGCGCTGGCACG
GACACCGAAGCCGATGGCTTCAACGTCGTGGCGTCCACGTCCGGAGGCAA
CGCCACGGTCGGCACAGCCACCAATGGAGCCACCGGCGACGTCACCGTCA
CGGCTGCCGCCGGCGCGGCCAGCCTGACGAGCGGCGACTCCAAGAACGAC
CTGATCGTCTCCGGGAAGTCGGCCTCTCTGGGGACCGGCACGGCCGCCCA
GGACATCAAGGTCACCGGCACGGCCGGCGACGCCAAGGTGACCACCTCGG
CCACGGCCACGCGCGACGTGATCGTCAGCTCGACCGGCGGCGACGCCCAG
GTGACGACGGCTTCCGGCCGCGACATCGCGGTCAGCGGCGGGGCGGCCAG
CCTGACAACCGGCACCGCGACCCGCGACATCGCCGTCAGCGGCGCCTCGG
CGACGCTGGACAGCGGCACGGCGAGCGGCGACGTGACCCTCACGGCTTCG
ACCGGCGATGCGAACGTCACCACCAAGGCCCAAGGCGCAAACGTCGGCAT
CACGGCCGCGGCCGGCAATTCGAACGTGGCGCTGGCGACAGCAACCGCGG
GCGACGTGACGGTGTCCGCGGCCAACGGCGCGGCCTCCCTGACCAGCAGC
ACGGCCACGCGCGACCTCACGCTCAGCGGCAAGTCGGCCACGCTGGGCAG
CGGCGTGGCCGGCCGCGATGCGACGCTGACGGCCACCGCCGGCGACGCGA
CAGTGACGACGCTTGCCCAGGCCGGCGACGACGTTCGCGTCATGGCCGGC
GCCGGGAGCGTCGTGGCCGGCGGCGCGGTGGTCCAATCGACCGGCGCGGG
AGCCGACACCGAGGCGGACGGCGCCAACGCGGTCGTCACGGCGTCCGGTG
TGGCCACGGTCGGCACGGCCAACAGCGGCGCGACCGGCGACGTGACGGTC
ACGGCGAGCGGCGGGGCAGCGACCCTCGACGCAGGCAGCGCAGGCCGCGA
CCTGCTCGTGGACGGATTCTCGGTGTCCTCCGCCGGCCTCCTGAAGGCCG
GTCGCGACGTGGCGGTGCGCGGCCGCACGGGAAGCATCGCGATCAAGGAC
GCCCAGGCCGGTGACGACGTCGTGCTGCGCGCGCCCGGGAGCATCACGGT
CGCGGGCGGCCTGACCACGACCAACGGTCCCGACAGCGATGCGACGGCCG
CTGGCGACGTGCTCTACGCCACCGGCAAGACCAGCTTCAACGGCCTGACG
TTCGATCTGGCCGGCTCGACCGTCGACCTACGCACCACGACCGGCAACAT
CGCCGTGGCCGGCGCCATCGACGCC
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