prot_P-wetherbeei_contig12885.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig12885.1.1
Unique Nameprot_P-wetherbeei_contig12885.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length213
Homology
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BLAST of mRNA_P-wetherbeei_contig12885.1.1 vs. uniprot
Match: UPI001BDF358B (tetratricopeptide repeat protein n=1 Tax=Bradyrhizobium sp. SRL28 TaxID=2836178 RepID=UPI001BDF358B)

HSP 1 Score: 53.5 bits (127), Expect = 6.210e-5
Identity = 28/80 (35.00%), Postives = 48/80 (60.00%), Query Frame = 0 
Query:   49 YSNRGLMHAYKDEYDLALSDFDASIRLNSGNPFARLGRAMALRNKGDYNRALADVEAVLRL-------PLNSD-ERLSAL 120
            Y +RG+ H   +++D A+ +FDA+++++   P+AR  RA AL + GDY R   + E   RL       P+ +D +R++AL
Sbjct:    8 YVHRGIAHFNANQFDHAIVNFDAALKIDPNEPYARYNRATALLSLGDYARGFPEYEVAWRLFHWRGFGPVGNDIDRITAL 87
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12885.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001BDF358B6.210e-535.00tetratricopeptide repeat protein n=1 Tax=Bradyrhiz... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 80..113
e-value: 17.0
score: 13.0
coord: 46..79
e-value: 0.029
score: 23.5
coord: 151..184
e-value: 0.29
score: 20.2
coord: 117..150
e-value: 4.1
score: 16.4
IPR019734Tetratricopeptide repeatPFAMPF13181TPR_8coord: 186..212
e-value: 0.014
score: 15.6
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 46..79
score: 8.4964
NoneNo IPR availablePFAMPF13432TPR_16coord: 121..182
e-value: 0.0037
score: 17.8
coord: 59..108
e-value: 0.0013
score: 19.2
NoneNo IPR availablePANTHERPTHR44858TETRATRICOPEPTIDE REPEAT PROTEIN 6coord: 24..212
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 120..213
e-value: 2.7E-17
score: 65.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 22..119
e-value: 2.7E-15
score: 58.3
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 23..182

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12885contigP-wetherbeei_contig12885:385..1023 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12885.1.1mRNA_P-wetherbeei_contig12885.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig12885 385..1023 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig12885.1.1 ID=prot_P-wetherbeei_contig12885.1.1|Name=mRNA_P-wetherbeei_contig12885.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=213bp
LPVASPAIAQRLSPEVVACSNFGGDPDRAIAACTRVIDRRITYNPDVAYS
NRGLMHAYKDEYDLALSDFDASIRLNSGNPFARLGRAMALRNKGDYNRAL
ADVEAVLRLPLNSDERLSALLQKAQTLRDQGAYDTARAQFEAVMAIYPTH
AWAYAGRASTFRAQGATARALADFDRALALEKFPAAYVGRAGLHESLGNL
EQAKADYAQALAL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf