mRNA_P-wetherbeei_contig7627.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7627.1.1
Unique NamemRNA_P-wetherbeei_contig7627.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7627.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7627contigP-wetherbeei_contig7627:293..2922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2066
Hectar predicted targeting categoryother localisation
Exons3
Cds size1860
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186992.126-CDS-P-wetherbeei_contig7627:292..21011683186992.126-CDS-P-wetherbeei_contig7627:292..2101Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7627 293..2101 -
1683186992.1375015-CDS-P-wetherbeei_contig7627:2281..23321683186992.1375015-CDS-P-wetherbeei_contig7627:2281..2332Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7627 2282..2332 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186992.148595-UTR-P-wetherbeei_contig7627:2332..23371683186992.148595-UTR-P-wetherbeei_contig7627:2332..2337Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7627 2333..2337 -
1683186992.1596737-UTR-P-wetherbeei_contig7627:2721..29221683186992.1596737-UTR-P-wetherbeei_contig7627:2721..2922Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7627 2722..2922 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7627.1.1prot_P-wetherbeei_contig7627.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7627 293..2332 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7627.1.1

>prot_P-wetherbeei_contig7627.1.1 ID=prot_P-wetherbeei_contig7627.1.1|Name=mRNA_P-wetherbeei_contig7627.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=620bp
MDTNRVTYVIVRLDGGKMLRLPNVLLNYQTTLRNFVAHLETALRRSPSDP
HVVLTGIEYRLRAANPDQPQDEDGWLLADGGGSGGRRREYVHAPLDEASF
DPKTFLALPLVRLRAQGRTADLSKDLRLHMPRPAHRAVAVQGAAAAVTAT
ATAALSAAVAVAEAKEGTPPAAAVRPTALATKEQAQEQPAGDQVLLPPLL
PLSSASVPAPLSTPPPPAPPAPPAPPAEQDEEEMIRAERCISDEGAGGGQ
RGATAEEDNSGGDGDDGSIGSVSGGSCGSGDGPDLAVDIPTRHPAGGDGG
DGDGDSDNDGDGECGGGGGDGGSGGGSGRNSGDSQSINSFDRSMGFNAAV
VDMQDDDVWRGRAPTTVSDDDEEEQRAETGSGGGGDGGSSAGSVVTSAAT
GANGASGKKDVMPSDSSADDDGGARALAPAVVATAATTSRNVAAEIVMAA
ADATAAAAGAEAAAQRAHELAQKRASRRMGLGDGRAEMLLLPPPPLLAEC
SSSLSSAAAPTAASGGAMASGKGDKKKPPEAQRPAELTDVSSPPRRKGQK
GTGRSAAVAATTATPVKAASLSPEPPLSSPRVPKGTGMFEKKRVVTPRVS
GRWKWENSLRTGALTVASFG
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mRNA from alignment at P-wetherbeei_contig7627:293..2922-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7627.1.1 ID=mRNA_P-wetherbeei_contig7627.1.1|Name=mRNA_P-wetherbeei_contig7627.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2630bp|location=Sequence derived from alignment at P-wetherbeei_contig7627:293..2922- (Phaeothamnion wetherbeei SAG_119_79)
CGAAATCGCGCCCCGAGTCGTACTATTAAAGGAAAGAAGGGATCCCAAGT
TAAGTGTAAAGGGTTCTAGGCGCTGGCAGGTCGCCTGTGCTCTGGAATTC
AGTGGTGCTTCCATCGTAAAACCACTCAACGGTGCTTTCTCTTTCGACGC
GTACACTTGAGGACTGAGACAGCGCGGCGGCGGTATCGAGCGCCTCCGCA
TGTGAGTGATCAGAGGGTGCACGAGAGGGAGCAATGGTCCCGAATCGGCT
GGTATAAGGCGTTCTCTTTCCTCATCAAGAATTTTGTGAGTTTTCTCTTC
GCCGCCTCGCCTCTCTCTTTTTCTACCACAGCGTGTTTGGTGGCTGCATT
GAGGCGATTTTTTGGATTGTCGCATGTTTGCTATAAGGCACTCAGTTCCC
TGTCGCGTTAAGGGGCGTCGCATGGTCGAAGCTTGTCGCCTTCGGCTTTT
CGGCACCCCGGATCCGCTTTTCTTCGGTTCATGCTGCTGTCCTGCTCAAC
TGCCTCGTAAACTTTCAACTATGCGGGATTGTTCCAACCCTCGTCCCTTA
CTACTCGATGCCAACTCCTGTTTCCTATGTTTCAGCCGTTATGGATACCA
ATCGCGTCACGTACGTTATTGTTCGACTCGATGGCGGCAAGGTAAGTCTC
AGTGTGCGCAGCGCTAGTTAACCGTGAGCAGCGCCCTAACTCCCTACATC
TTCTGCGTTTTCAAAGCTGTTCCTACTGCACTGCGGTCGCCGCCTCTCTG
GGCCCAACCTATTGCTCCTCCTGCCGCACTCCCACCCCTCCCTTTTCCTT
CCGCACGATCTCTGTGCGCAGATGCTGCGGCTGCCCAACGTCCTGCTGAA
CTACCAGACCACGCTGCGCAATTTCGTCGCCCACCTCGAAACGGCACTCC
GGCGGAGCCCATCAGACCCTCACGTTGTCCTGACGGGCATCGAGTACCGC
CTCCGCGCCGCCAACCCGGACCAGCCGCAGGATGAAGATGGCTGGCTGCT
GGCGGACGGCGGCGGCAGCGGCGGACGGCGCCGGGAGTATGTGCACGCAC
CACTGGACGAAGCATCGTTCGATCCGAAGACGTTCCTGGCGCTGCCGCTG
GTGCGGCTGCGCGCGCAGGGGCGGACAGCGGACCTGAGCAAGGACCTGCG
CCTGCACATGCCGCGGCCGGCGCACCGCGCCGTCGCCGTGCAGGGTGCCG
CTGCGGCAGTGACGGCGACTGCGACGGCGGCGTTATCAGCAGCGGTGGCG
GTGGCAGAGGCAAAGGAGGGAACGCCGCCGGCAGCAGCCGTGAGGCCCAC
GGCCCTTGCAACGAAGGAGCAGGCACAGGAGCAACCAGCTGGCGATCAGG
TACTTCTGCCGCCGCTGCTGCCGTTGTCATCCGCAAGCGTGCCGGCACCC
TTGTCGACGCCGCCGCCACCGGCGCCACCGGCGCCACCGGCGCCACCAGC
AGAACAGGACGAGGAGGAGATGATCCGCGCCGAGCGCTGCATCAGTGATG
AGGGAGCGGGAGGAGGACAAAGAGGAGCAACTGCGGAGGAGGACAACAGC
GGCGGGGATGGAGACGACGGCAGCATCGGCAGCGTTTCCGGCGGCTCTTG
TGGTTCCGGCGACGGTCCCGACCTCGCCGTCGACATCCCGACCCGGCATC
CTGCCGGCGGCGATGGCGGCGACGGCGATGGGGACAGCGACAATGATGGC
GACGGCGAATGCGGCGGCGGTGGCGGCGACGGCGGCAGTGGTGGCGGTAG
TGGCCGTAACAGCGGGGATTCGCAATCCATCAACTCGTTCGACCGCAGCA
TGGGCTTCAACGCGGCGGTGGTCGATATGCAAGACGACGACGTCTGGCGG
GGCCGCGCTCCGACCACGGTCAGCGACGACGACGAGGAGGAGCAACGAGC
CGAGACTGGCTCTGGCGGCGGCGGCGACGGTGGCAGCAGTGCCGGCAGCG
TTGTTACAAGCGCGGCGACGGGGGCGAACGGAGCGAGCGGAAAGAAAGAC
GTAATGCCGTCAGATTCTTCGGCAGATGACGACGGCGGCGCCCGCGCCTT
GGCCCCCGCCGTCGTCGCCACCGCTGCCACAACCTCCCGGAACGTGGCGG
CGGAAATTGTTATGGCGGCTGCCGACGCCACCGCGGCCGCCGCGGGGGCC
GAGGCCGCTGCACAGCGGGCGCACGAGCTGGCGCAGAAGCGCGCGTCTCG
GCGTATGGGCCTGGGCGACGGGCGCGCAGAAATGCTTTTGCTGCCGCCAC
CGCCACTGCTTGCAGAGTGCTCCTCCTCTTTAAGTTCGGCGGCAGCACCA
ACGGCGGCCAGCGGTGGTGCCATGGCGTCGGGAAAGGGAGATAAGAAGAA
GCCGCCGGAAGCGCAGCGGCCAGCGGAGCTGACAGATGTGTCCTCACCGC
CGCGGCGCAAGGGGCAGAAGGGTACTGGCCGCTCAGCGGCGGTAGCCGCA
ACGACGGCGACACCGGTTAAGGCGGCGTCACTGTCACCGGAGCCGCCCCT
CAGCTCCCCGCGGGTGCCCAAGGGGACGGGCATGTTCGAAAAGAAGCGAG
TTGTGACGCCGCGCGTGTCGGGCCGCTGGAAGTGGGAGAACTCGCTCCGA
ACTGGCGCCCTCACGGTCGCCAGCTTTGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7627:293..2922-

>mRNA_P-wetherbeei_contig7627.1.1 ID=mRNA_P-wetherbeei_contig7627.1.1|Name=mRNA_P-wetherbeei_contig7627.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1860bp|location=Sequence derived from alignment at P-wetherbeei_contig7627:293..2922- (Phaeothamnion wetherbeei SAG_119_79)
ATGGATACCAATCGCGTCACGTACGTTATTGTTCGACTCGATGGCGGCAA
GATGCTGCGGCTGCCCAACGTCCTGCTGAACTACCAGACCACGCTGCGCA
ATTTCGTCGCCCACCTCGAAACGGCACTCCGGCGGAGCCCATCAGACCCT
CACGTTGTCCTGACGGGCATCGAGTACCGCCTCCGCGCCGCCAACCCGGA
CCAGCCGCAGGATGAAGATGGCTGGCTGCTGGCGGACGGCGGCGGCAGCG
GCGGACGGCGCCGGGAGTATGTGCACGCACCACTGGACGAAGCATCGTTC
GATCCGAAGACGTTCCTGGCGCTGCCGCTGGTGCGGCTGCGCGCGCAGGG
GCGGACAGCGGACCTGAGCAAGGACCTGCGCCTGCACATGCCGCGGCCGG
CGCACCGCGCCGTCGCCGTGCAGGGTGCCGCTGCGGCAGTGACGGCGACT
GCGACGGCGGCGTTATCAGCAGCGGTGGCGGTGGCAGAGGCAAAGGAGGG
AACGCCGCCGGCAGCAGCCGTGAGGCCCACGGCCCTTGCAACGAAGGAGC
AGGCACAGGAGCAACCAGCTGGCGATCAGGTACTTCTGCCGCCGCTGCTG
CCGTTGTCATCCGCAAGCGTGCCGGCACCCTTGTCGACGCCGCCGCCACC
GGCGCCACCGGCGCCACCGGCGCCACCAGCAGAACAGGACGAGGAGGAGA
TGATCCGCGCCGAGCGCTGCATCAGTGATGAGGGAGCGGGAGGAGGACAA
AGAGGAGCAACTGCGGAGGAGGACAACAGCGGCGGGGATGGAGACGACGG
CAGCATCGGCAGCGTTTCCGGCGGCTCTTGTGGTTCCGGCGACGGTCCCG
ACCTCGCCGTCGACATCCCGACCCGGCATCCTGCCGGCGGCGATGGCGGC
GACGGCGATGGGGACAGCGACAATGATGGCGACGGCGAATGCGGCGGCGG
TGGCGGCGACGGCGGCAGTGGTGGCGGTAGTGGCCGTAACAGCGGGGATT
CGCAATCCATCAACTCGTTCGACCGCAGCATGGGCTTCAACGCGGCGGTG
GTCGATATGCAAGACGACGACGTCTGGCGGGGCCGCGCTCCGACCACGGT
CAGCGACGACGACGAGGAGGAGCAACGAGCCGAGACTGGCTCTGGCGGCG
GCGGCGACGGTGGCAGCAGTGCCGGCAGCGTTGTTACAAGCGCGGCGACG
GGGGCGAACGGAGCGAGCGGAAAGAAAGACGTAATGCCGTCAGATTCTTC
GGCAGATGACGACGGCGGCGCCCGCGCCTTGGCCCCCGCCGTCGTCGCCA
CCGCTGCCACAACCTCCCGGAACGTGGCGGCGGAAATTGTTATGGCGGCT
GCCGACGCCACCGCGGCCGCCGCGGGGGCCGAGGCCGCTGCACAGCGGGC
GCACGAGCTGGCGCAGAAGCGCGCGTCTCGGCGTATGGGCCTGGGCGACG
GGCGCGCAGAAATGCTTTTGCTGCCGCCACCGCCACTGCTTGCAGAGTGC
TCCTCCTCTTTAAGTTCGGCGGCAGCACCAACGGCGGCCAGCGGTGGTGC
CATGGCGTCGGGAAAGGGAGATAAGAAGAAGCCGCCGGAAGCGCAGCGGC
CAGCGGAGCTGACAGATGTGTCCTCACCGCCGCGGCGCAAGGGGCAGAAG
GGTACTGGCCGCTCAGCGGCGGTAGCCGCAACGACGGCGACACCGGTTAA
GGCGGCGTCACTGTCACCGGAGCCGCCCCTCAGCTCCCCGCGGGTGCCCA
AGGGGACGGGCATGTTCGAAAAGAAGCGAGTTGTGACGCCGCGCGTGTCG
GGCCGCTGGAAGTGGGAGAACTCGCTCCGAACTGGCGCCCTCACGGTCGC
CAGCTTTGGT
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